data_2R5F # _entry.id 2R5F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2R5F RCSB RCSB044447 WWPDB D_1000044447 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC84820 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2R5F _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-09-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Duggan, E.' 2 'Clancy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Putative sugar-binding domain of trancsriptional regulator DeoR from Pseudomonas syringae pv. tomato.' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cuff, M.E.' 1 primary 'Duggan, E.' 2 primary 'Clancy, S.' 3 primary 'Joachimiak, A.' 4 # _cell.length_a 42.112 _cell.length_b 42.112 _cell.length_c 144.782 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 2R5F _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 43' _symmetry.entry_id 2R5F _symmetry.Int_Tables_number 78 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator, putative' 28917.014 1 ? ? 'Putative sugar-binding domain: Residues 57-317' ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 108 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNARPQGLHLELETRLQK(MSE)YGIRQVIVVEATEPDDEESIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRA (MSE)VSH(MSE)HPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRLATLLNCPAFLLPSQSIEQSVESKQRIVE(MSE) EEVKEVLHRFDSITLAIVGIGELEPSQLLRNSGNYYTED(MSE)LRVLAERGAVGDICLRYFDAQGKPVLEEDEEFVVS (MSE)GLGKLRSINRVLGLAGGVRKVQAIKGALLGGYLDVLITDVGTARGLGG ; _entity_poly.pdbx_seq_one_letter_code_can ;SNARPQGLHLELETRLQKMYGIRQVIVVEATEPDDEESIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAMVSHMHPQ PGKQSAQEVVQLLGGVGNKGAFEATLLTQRLATLLNCPAFLLPSQSIEQSVESKQRIVEMEEVKEVLHRFDSITLAIVGI GELEPSQLLRNSGNYYTEDMLRVLAERGAVGDICLRYFDAQGKPVLEEDEEFVVSMGLGKLRSINRVLGLAGGVRKVQAI KGALLGGYLDVLITDVGTARGLGG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC84820 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 ARG n 1 5 PRO n 1 6 GLN n 1 7 GLY n 1 8 LEU n 1 9 HIS n 1 10 LEU n 1 11 GLU n 1 12 LEU n 1 13 GLU n 1 14 THR n 1 15 ARG n 1 16 LEU n 1 17 GLN n 1 18 LYS n 1 19 MSE n 1 20 TYR n 1 21 GLY n 1 22 ILE n 1 23 ARG n 1 24 GLN n 1 25 VAL n 1 26 ILE n 1 27 VAL n 1 28 VAL n 1 29 GLU n 1 30 ALA n 1 31 THR n 1 32 GLU n 1 33 PRO n 1 34 ASP n 1 35 ASP n 1 36 GLU n 1 37 GLU n 1 38 SER n 1 39 ILE n 1 40 LYS n 1 41 GLN n 1 42 ALA n 1 43 ILE n 1 44 GLY n 1 45 SER n 1 46 ALA n 1 47 ALA n 1 48 ALA n 1 49 HIS n 1 50 TYR n 1 51 LEU n 1 52 GLU n 1 53 THR n 1 54 SER n 1 55 LEU n 1 56 SER n 1 57 ALA n 1 58 GLN n 1 59 ASP n 1 60 HIS n 1 61 ILE n 1 62 GLY n 1 63 ILE n 1 64 SER n 1 65 SER n 1 66 TRP n 1 67 SER n 1 68 SER n 1 69 THR n 1 70 ILE n 1 71 ARG n 1 72 ALA n 1 73 MSE n 1 74 VAL n 1 75 SER n 1 76 HIS n 1 77 MSE n 1 78 HIS n 1 79 PRO n 1 80 GLN n 1 81 PRO n 1 82 GLY n 1 83 LYS n 1 84 GLN n 1 85 SER n 1 86 ALA n 1 87 GLN n 1 88 GLU n 1 89 VAL n 1 90 VAL n 1 91 GLN n 1 92 LEU n 1 93 LEU n 1 94 GLY n 1 95 GLY n 1 96 VAL n 1 97 GLY n 1 98 ASN n 1 99 LYS n 1 100 GLY n 1 101 ALA n 1 102 PHE n 1 103 GLU n 1 104 ALA n 1 105 THR n 1 106 LEU n 1 107 LEU n 1 108 THR n 1 109 GLN n 1 110 ARG n 1 111 LEU n 1 112 ALA n 1 113 THR n 1 114 LEU n 1 115 LEU n 1 116 ASN n 1 117 CYS n 1 118 PRO n 1 119 ALA n 1 120 PHE n 1 121 LEU n 1 122 LEU n 1 123 PRO n 1 124 SER n 1 125 GLN n 1 126 SER n 1 127 ILE n 1 128 GLU n 1 129 GLN n 1 130 SER n 1 131 VAL n 1 132 GLU n 1 133 SER n 1 134 LYS n 1 135 GLN n 1 136 ARG n 1 137 ILE n 1 138 VAL n 1 139 GLU n 1 140 MSE n 1 141 GLU n 1 142 GLU n 1 143 VAL n 1 144 LYS n 1 145 GLU n 1 146 VAL n 1 147 LEU n 1 148 HIS n 1 149 ARG n 1 150 PHE n 1 151 ASP n 1 152 SER n 1 153 ILE n 1 154 THR n 1 155 LEU n 1 156 ALA n 1 157 ILE n 1 158 VAL n 1 159 GLY n 1 160 ILE n 1 161 GLY n 1 162 GLU n 1 163 LEU n 1 164 GLU n 1 165 PRO n 1 166 SER n 1 167 GLN n 1 168 LEU n 1 169 LEU n 1 170 ARG n 1 171 ASN n 1 172 SER n 1 173 GLY n 1 174 ASN n 1 175 TYR n 1 176 TYR n 1 177 THR n 1 178 GLU n 1 179 ASP n 1 180 MSE n 1 181 LEU n 1 182 ARG n 1 183 VAL n 1 184 LEU n 1 185 ALA n 1 186 GLU n 1 187 ARG n 1 188 GLY n 1 189 ALA n 1 190 VAL n 1 191 GLY n 1 192 ASP n 1 193 ILE n 1 194 CYS n 1 195 LEU n 1 196 ARG n 1 197 TYR n 1 198 PHE n 1 199 ASP n 1 200 ALA n 1 201 GLN n 1 202 GLY n 1 203 LYS n 1 204 PRO n 1 205 VAL n 1 206 LEU n 1 207 GLU n 1 208 GLU n 1 209 ASP n 1 210 GLU n 1 211 GLU n 1 212 PHE n 1 213 VAL n 1 214 VAL n 1 215 SER n 1 216 MSE n 1 217 GLY n 1 218 LEU n 1 219 GLY n 1 220 LYS n 1 221 LEU n 1 222 ARG n 1 223 SER n 1 224 ILE n 1 225 ASN n 1 226 ARG n 1 227 VAL n 1 228 LEU n 1 229 GLY n 1 230 LEU n 1 231 ALA n 1 232 GLY n 1 233 GLY n 1 234 VAL n 1 235 ARG n 1 236 LYS n 1 237 VAL n 1 238 GLN n 1 239 ALA n 1 240 ILE n 1 241 LYS n 1 242 GLY n 1 243 ALA n 1 244 LEU n 1 245 LEU n 1 246 GLY n 1 247 GLY n 1 248 TYR n 1 249 LEU n 1 250 ASP n 1 251 VAL n 1 252 LEU n 1 253 ILE n 1 254 THR n 1 255 ASP n 1 256 VAL n 1 257 GLY n 1 258 THR n 1 259 ALA n 1 260 ARG n 1 261 GLY n 1 262 LEU n 1 263 GLY n 1 264 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pseudomonas _entity_src_gen.pdbx_gene_src_gene 'DeoR, PSPTO_2395' _entity_src_gen.gene_src_species 'Pseudomonas syringae group genomosp. 3' _entity_src_gen.gene_src_strain DC3000 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas syringae pv. tomato' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 223283 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q883G8_PSESM _struct_ref.pdbx_db_accession Q883G8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RPQGLHLELETRLQKMYGIRQVIVVEATEPDDEESIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAMVSHMHPQPGK QSAQEVVQLLGGVGNKGAFEATLLTQRLATLLNCPAFLLPSQSIEQSVESKQRIVEMEEVKEVLHRFDSITLAIVGIGEL EPSQLLRNSGNYYTEDMLRVLAERGAVGDICLRYFDAQGKPVLEEDEEFVVSMGLGKLRSINRVLGLAGGVRKVQAIKGA LLGGYLDVLITDVGTARGLGG ; _struct_ref.pdbx_align_begin 57 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2R5F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 264 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q883G8 _struct_ref_seq.db_align_beg 57 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 317 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 57 _struct_ref_seq.pdbx_auth_seq_align_end 317 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2R5F SER A 1 ? UNP Q883G8 ? ? 'EXPRESSION TAG' 54 1 1 2R5F ASN A 2 ? UNP Q883G8 ? ? 'EXPRESSION TAG' 55 2 1 2R5F ALA A 3 ? UNP Q883G8 ? ? 'EXPRESSION TAG' 56 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2R5F _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M Bis-Tris pH 6.5, 2M Ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 2006-06-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97907 1.0 2 0.97921 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97907, 0.97921' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM # _reflns.entry_id 2R5F _reflns.d_resolution_high 2.100 _reflns.d_resolution_low 50.000 _reflns.number_obs 13180 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_netI_over_sigmaI 10.600 _reflns.pdbx_chi_squared 1.856 _reflns.pdbx_redundancy 7.700 _reflns.percent_possible_obs 89.500 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all 13180 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 36.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.434 _reflns_shell.meanI_over_sigI_obs 2.65 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.871 _reflns_shell.pdbx_redundancy 4.40 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1052 _reflns_shell.percent_possible_all 72.70 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2R5F _refine.ls_d_res_high 2.100 _refine.ls_d_res_low 36.400 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 89.480 _refine.ls_number_reflns_obs 13120 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.197 _refine.ls_R_factor_R_work 0.195 _refine.ls_R_factor_R_free 0.252 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 658 _refine.B_iso_mean 42.944 _refine.aniso_B[1][1] 1.840 _refine.aniso_B[2][2] 1.840 _refine.aniso_B[3][3] -3.680 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.927 _refine.pdbx_overall_ESU_R 0.246 _refine.pdbx_overall_ESU_R_Free 0.210 _refine.overall_SU_ML 0.204 _refine.overall_SU_B 15.430 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 13120 _refine.ls_R_factor_all 0.197 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1635 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 1753 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 36.400 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1670 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2250 1.477 1.985 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 214 6.569 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 66 39.925 23.939 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 299 16.229 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12 24.166 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 268 0.095 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1200 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 699 0.200 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1129 0.298 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 84 0.165 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 24 0.155 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 9 0.121 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1112 0.916 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1702 1.306 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 626 2.127 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 548 3.200 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.155 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 72.180 _refine_ls_shell.number_reflns_R_work 732 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.239 _refine_ls_shell.R_factor_R_free 0.321 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 36 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 768 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2R5F _struct.title 'Putative sugar-binding domain of transcriptional regulator DeoR from Pseudomonas syringae pv. tomato' _struct.pdbx_descriptor 'Transcriptional regulator, putative' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2R5F _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;transcription regulator, sugar-binding domain, structural genomics, pfam04198, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, TRANSCRIPTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details 'Authors state that the biological unit of this polypeptide is unknown.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 9 ? GLY A 21 ? HIS A 62 GLY A 74 1 ? 13 HELX_P HELX_P2 2 ASP A 35 ? LEU A 55 ? ASP A 88 LEU A 108 1 ? 21 HELX_P HELX_P3 3 SER A 67 ? HIS A 76 ? SER A 120 HIS A 129 1 ? 10 HELX_P HELX_P4 4 GLY A 100 ? ASN A 116 ? GLY A 153 ASN A 169 1 ? 17 HELX_P HELX_P5 5 ILE A 137 ? PHE A 150 ? ILE A 190 PHE A 203 1 ? 14 HELX_P HELX_P6 6 GLY A 217 ? SER A 223 ? GLY A 270 SER A 276 1 ? 7 HELX_P HELX_P7 7 GLY A 233 ? ARG A 235 ? GLY A 286 ARG A 288 5 ? 3 HELX_P HELX_P8 8 LYS A 236 ? GLY A 246 ? LYS A 289 GLY A 299 1 ? 11 HELX_P HELX_P9 9 VAL A 256 ? GLY A 263 ? VAL A 309 GLY A 316 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LYS 18 C ? ? ? 1_555 A MSE 19 N ? ? A LYS 71 A MSE 72 1_555 ? ? ? ? ? ? ? 1.336 ? covale2 covale ? ? A MSE 19 C ? ? ? 1_555 A TYR 20 N ? ? A MSE 72 A TYR 73 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale ? ? A ALA 72 C ? ? ? 1_555 A MSE 73 N ? ? A ALA 125 A MSE 126 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A MSE 73 C ? ? ? 1_555 A VAL 74 N ? ? A MSE 126 A VAL 127 1_555 ? ? ? ? ? ? ? 1.336 ? covale5 covale ? ? A HIS 76 C ? ? ? 1_555 A MSE 77 N ? ? A HIS 129 A MSE 130 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 77 C ? ? ? 1_555 A HIS 78 N ? ? A MSE 130 A HIS 131 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale ? ? A GLU 139 C ? ? ? 1_555 A MSE 140 N ? ? A GLU 192 A MSE 193 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale ? ? A MSE 140 C ? ? ? 1_555 A GLU 141 N ? ? A MSE 193 A GLU 194 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale ? ? A SER 215 C ? ? ? 1_555 A MSE 216 N ? ? A SER 268 A MSE 269 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale ? ? A MSE 216 C ? ? ? 1_555 A GLY 217 N ? ? A MSE 269 A GLY 270 1_555 ? ? ? ? ? ? ? 1.336 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 24 ? VAL A 28 ? GLN A 77 VAL A 81 A 2 VAL A 251 ? ASP A 255 ? VAL A 304 ASP A 308 A 3 ARG A 226 ? LEU A 230 ? ARG A 279 LEU A 283 A 4 LEU A 155 ? VAL A 158 ? LEU A 208 VAL A 211 A 5 HIS A 60 ? ILE A 63 ? HIS A 113 ILE A 116 A 6 GLU A 88 ? GLN A 91 ? GLU A 141 GLN A 144 A 7 ALA A 119 ? PHE A 120 ? ALA A 172 PHE A 173 B 1 LEU A 93 ? GLY A 94 ? LEU A 146 GLY A 147 B 2 VAL A 214 ? SER A 215 ? VAL A 267 SER A 268 C 1 GLY A 161 ? GLU A 162 ? GLY A 214 GLU A 215 C 2 GLY A 191 ? ILE A 193 ? GLY A 244 ILE A 246 C 3 ARG A 196 ? PHE A 198 ? ARG A 249 PHE A 251 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 26 ? N ILE A 79 O LEU A 252 ? O LEU A 305 A 2 3 O VAL A 251 ? O VAL A 304 N GLY A 229 ? N GLY A 282 A 3 4 O LEU A 228 ? O LEU A 281 N ALA A 156 ? N ALA A 209 A 4 5 O ILE A 157 ? O ILE A 210 N GLY A 62 ? N GLY A 115 A 5 6 N ILE A 61 ? N ILE A 114 O VAL A 90 ? O VAL A 143 A 6 7 N GLN A 91 ? N GLN A 144 O PHE A 120 ? O PHE A 173 B 1 2 N GLY A 94 ? N GLY A 147 O VAL A 214 ? O VAL A 267 C 1 2 N GLY A 161 ? N GLY A 214 O ASP A 192 ? O ASP A 245 C 2 3 N ILE A 193 ? N ILE A 246 O ARG A 196 ? O ARG A 249 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 1' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 SER A 67 ? SER A 120 . ? 1_555 ? 2 AC1 6 SER A 68 ? SER A 121 . ? 1_555 ? 3 AC1 6 THR A 69 ? THR A 122 . ? 1_555 ? 4 AC1 6 LYS A 236 ? LYS A 289 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 330 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 382 . ? 1_555 ? 7 AC2 5 HIS A 9 ? HIS A 62 . ? 1_555 ? 8 AC2 5 GLU A 11 ? GLU A 64 . ? 1_555 ? 9 AC2 5 LEU A 12 ? LEU A 65 . ? 1_555 ? 10 AC2 5 ARG A 15 ? ARG A 68 . ? 1_555 ? 11 AC2 5 ARG A 260 ? ARG A 313 . ? 1_555 ? # _atom_sites.entry_id 2R5F _atom_sites.fract_transf_matrix[1][1] 0.023746 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023746 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006907 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 54 ? ? ? A . n A 1 2 ASN 2 55 ? ? ? A . n A 1 3 ALA 3 56 ? ? ? A . n A 1 4 ARG 4 57 ? ? ? A . n A 1 5 PRO 5 58 ? ? ? A . n A 1 6 GLN 6 59 59 GLN GLN A . n A 1 7 GLY 7 60 60 GLY GLY A . n A 1 8 LEU 8 61 61 LEU LEU A . n A 1 9 HIS 9 62 62 HIS HIS A . n A 1 10 LEU 10 63 63 LEU LEU A . n A 1 11 GLU 11 64 64 GLU GLU A . n A 1 12 LEU 12 65 65 LEU LEU A . n A 1 13 GLU 13 66 66 GLU GLU A . n A 1 14 THR 14 67 67 THR THR A . n A 1 15 ARG 15 68 68 ARG ARG A . n A 1 16 LEU 16 69 69 LEU LEU A . n A 1 17 GLN 17 70 70 GLN GLN A . n A 1 18 LYS 18 71 71 LYS LYS A . n A 1 19 MSE 19 72 72 MSE MSE A . n A 1 20 TYR 20 73 73 TYR TYR A . n A 1 21 GLY 21 74 74 GLY GLY A . n A 1 22 ILE 22 75 75 ILE ILE A . n A 1 23 ARG 23 76 76 ARG ARG A . n A 1 24 GLN 24 77 77 GLN GLN A . n A 1 25 VAL 25 78 78 VAL VAL A . n A 1 26 ILE 26 79 79 ILE ILE A . n A 1 27 VAL 27 80 80 VAL VAL A . n A 1 28 VAL 28 81 81 VAL VAL A . n A 1 29 GLU 29 82 82 GLU GLU A . n A 1 30 ALA 30 83 83 ALA ALA A . n A 1 31 THR 31 84 84 THR THR A . n A 1 32 GLU 32 85 85 GLU GLU A . n A 1 33 PRO 33 86 86 PRO PRO A . n A 1 34 ASP 34 87 87 ASP ASP A . n A 1 35 ASP 35 88 88 ASP ASP A . n A 1 36 GLU 36 89 89 GLU GLU A . n A 1 37 GLU 37 90 90 GLU GLU A . n A 1 38 SER 38 91 91 SER SER A . n A 1 39 ILE 39 92 92 ILE ILE A . n A 1 40 LYS 40 93 93 LYS LYS A . n A 1 41 GLN 41 94 94 GLN GLN A . n A 1 42 ALA 42 95 95 ALA ALA A . n A 1 43 ILE 43 96 96 ILE ILE A . n A 1 44 GLY 44 97 97 GLY GLY A . n A 1 45 SER 45 98 98 SER SER A . n A 1 46 ALA 46 99 99 ALA ALA A . n A 1 47 ALA 47 100 100 ALA ALA A . n A 1 48 ALA 48 101 101 ALA ALA A . n A 1 49 HIS 49 102 102 HIS HIS A . n A 1 50 TYR 50 103 103 TYR TYR A . n A 1 51 LEU 51 104 104 LEU LEU A . n A 1 52 GLU 52 105 105 GLU GLU A . n A 1 53 THR 53 106 106 THR THR A . n A 1 54 SER 54 107 107 SER SER A . n A 1 55 LEU 55 108 108 LEU LEU A . n A 1 56 SER 56 109 109 SER SER A . n A 1 57 ALA 57 110 110 ALA ALA A . n A 1 58 GLN 58 111 111 GLN GLN A . n A 1 59 ASP 59 112 112 ASP ASP A . n A 1 60 HIS 60 113 113 HIS HIS A . n A 1 61 ILE 61 114 114 ILE ILE A . n A 1 62 GLY 62 115 115 GLY GLY A . n A 1 63 ILE 63 116 116 ILE ILE A . n A 1 64 SER 64 117 117 SER SER A . n A 1 65 SER 65 118 118 SER SER A . n A 1 66 TRP 66 119 119 TRP TRP A . n A 1 67 SER 67 120 120 SER SER A . n A 1 68 SER 68 121 121 SER SER A . n A 1 69 THR 69 122 122 THR THR A . n A 1 70 ILE 70 123 123 ILE ILE A . n A 1 71 ARG 71 124 124 ARG ARG A . n A 1 72 ALA 72 125 125 ALA ALA A . n A 1 73 MSE 73 126 126 MSE MSE A . n A 1 74 VAL 74 127 127 VAL VAL A . n A 1 75 SER 75 128 128 SER SER A . n A 1 76 HIS 76 129 129 HIS HIS A . n A 1 77 MSE 77 130 130 MSE MSE A . n A 1 78 HIS 78 131 131 HIS HIS A . n A 1 79 PRO 79 132 132 PRO PRO A . n A 1 80 GLN 80 133 ? ? ? A . n A 1 81 PRO 81 134 ? ? ? A . n A 1 82 GLY 82 135 135 GLY GLY A . n A 1 83 LYS 83 136 136 LYS LYS A . n A 1 84 GLN 84 137 137 GLN GLN A . n A 1 85 SER 85 138 138 SER SER A . n A 1 86 ALA 86 139 139 ALA ALA A . n A 1 87 GLN 87 140 140 GLN GLN A . n A 1 88 GLU 88 141 141 GLU GLU A . n A 1 89 VAL 89 142 142 VAL VAL A . n A 1 90 VAL 90 143 143 VAL VAL A . n A 1 91 GLN 91 144 144 GLN GLN A . n A 1 92 LEU 92 145 145 LEU LEU A . n A 1 93 LEU 93 146 146 LEU LEU A . n A 1 94 GLY 94 147 147 GLY GLY A . n A 1 95 GLY 95 148 148 GLY GLY A . n A 1 96 VAL 96 149 149 VAL VAL A . n A 1 97 GLY 97 150 150 GLY GLY A . n A 1 98 ASN 98 151 ? ? ? A . n A 1 99 LYS 99 152 ? ? ? A . n A 1 100 GLY 100 153 153 GLY GLY A . n A 1 101 ALA 101 154 154 ALA ALA A . n A 1 102 PHE 102 155 155 PHE PHE A . n A 1 103 GLU 103 156 156 GLU GLU A . n A 1 104 ALA 104 157 157 ALA ALA A . n A 1 105 THR 105 158 158 THR THR A . n A 1 106 LEU 106 159 159 LEU LEU A . n A 1 107 LEU 107 160 160 LEU LEU A . n A 1 108 THR 108 161 161 THR THR A . n A 1 109 GLN 109 162 162 GLN GLN A . n A 1 110 ARG 110 163 163 ARG ARG A . n A 1 111 LEU 111 164 164 LEU LEU A . n A 1 112 ALA 112 165 165 ALA ALA A . n A 1 113 THR 113 166 166 THR THR A . n A 1 114 LEU 114 167 167 LEU LEU A . n A 1 115 LEU 115 168 168 LEU LEU A . n A 1 116 ASN 116 169 169 ASN ASN A . n A 1 117 CYS 117 170 170 CYS CYS A . n A 1 118 PRO 118 171 171 PRO PRO A . n A 1 119 ALA 119 172 172 ALA ALA A . n A 1 120 PHE 120 173 173 PHE PHE A . n A 1 121 LEU 121 174 174 LEU LEU A . n A 1 122 LEU 122 175 175 LEU LEU A . n A 1 123 PRO 123 176 176 PRO PRO A . n A 1 124 SER 124 177 177 SER SER A . n A 1 125 GLN 125 178 ? ? ? A . n A 1 126 SER 126 179 ? ? ? A . n A 1 127 ILE 127 180 ? ? ? A . n A 1 128 GLU 128 181 ? ? ? A . n A 1 129 GLN 129 182 ? ? ? A . n A 1 130 SER 130 183 ? ? ? A . n A 1 131 VAL 131 184 ? ? ? A . n A 1 132 GLU 132 185 ? ? ? A . n A 1 133 SER 133 186 ? ? ? A . n A 1 134 LYS 134 187 ? ? ? A . n A 1 135 GLN 135 188 188 GLN GLN A . n A 1 136 ARG 136 189 189 ARG ARG A . n A 1 137 ILE 137 190 190 ILE ILE A . n A 1 138 VAL 138 191 191 VAL VAL A . n A 1 139 GLU 139 192 192 GLU GLU A . n A 1 140 MSE 140 193 193 MSE MSE A . n A 1 141 GLU 141 194 194 GLU GLU A . n A 1 142 GLU 142 195 195 GLU GLU A . n A 1 143 VAL 143 196 196 VAL VAL A . n A 1 144 LYS 144 197 197 LYS LYS A . n A 1 145 GLU 145 198 198 GLU GLU A . n A 1 146 VAL 146 199 199 VAL VAL A . n A 1 147 LEU 147 200 200 LEU LEU A . n A 1 148 HIS 148 201 201 HIS HIS A . n A 1 149 ARG 149 202 202 ARG ARG A . n A 1 150 PHE 150 203 203 PHE PHE A . n A 1 151 ASP 151 204 204 ASP ASP A . n A 1 152 SER 152 205 205 SER SER A . n A 1 153 ILE 153 206 206 ILE ILE A . n A 1 154 THR 154 207 207 THR THR A . n A 1 155 LEU 155 208 208 LEU LEU A . n A 1 156 ALA 156 209 209 ALA ALA A . n A 1 157 ILE 157 210 210 ILE ILE A . n A 1 158 VAL 158 211 211 VAL VAL A . n A 1 159 GLY 159 212 212 GLY GLY A . n A 1 160 ILE 160 213 213 ILE ILE A . n A 1 161 GLY 161 214 214 GLY GLY A . n A 1 162 GLU 162 215 215 GLU GLU A . n A 1 163 LEU 163 216 216 LEU LEU A . n A 1 164 GLU 164 217 217 GLU GLU A . n A 1 165 PRO 165 218 ? ? ? A . n A 1 166 SER 166 219 ? ? ? A . n A 1 167 GLN 167 220 ? ? ? A . n A 1 168 LEU 168 221 ? ? ? A . n A 1 169 LEU 169 222 ? ? ? A . n A 1 170 ARG 170 223 ? ? ? A . n A 1 171 ASN 171 224 ? ? ? A . n A 1 172 SER 172 225 ? ? ? A . n A 1 173 GLY 173 226 ? ? ? A . n A 1 174 ASN 174 227 ? ? ? A . n A 1 175 TYR 175 228 ? ? ? A . n A 1 176 TYR 176 229 ? ? ? A . n A 1 177 THR 177 230 ? ? ? A . n A 1 178 GLU 178 231 ? ? ? A . n A 1 179 ASP 179 232 ? ? ? A . n A 1 180 MSE 180 233 ? ? ? A . n A 1 181 LEU 181 234 ? ? ? A . n A 1 182 ARG 182 235 ? ? ? A . n A 1 183 VAL 183 236 ? ? ? A . n A 1 184 LEU 184 237 237 LEU LEU A . n A 1 185 ALA 185 238 238 ALA ALA A . n A 1 186 GLU 186 239 239 GLU GLU A . n A 1 187 ARG 187 240 240 ARG ARG A . n A 1 188 GLY 188 241 241 GLY GLY A . n A 1 189 ALA 189 242 242 ALA ALA A . n A 1 190 VAL 190 243 243 VAL VAL A . n A 1 191 GLY 191 244 244 GLY GLY A . n A 1 192 ASP 192 245 245 ASP ASP A . n A 1 193 ILE 193 246 246 ILE ILE A . n A 1 194 CYS 194 247 247 CYS CYS A . n A 1 195 LEU 195 248 248 LEU LEU A . n A 1 196 ARG 196 249 249 ARG ARG A . n A 1 197 TYR 197 250 250 TYR TYR A . n A 1 198 PHE 198 251 251 PHE PHE A . n A 1 199 ASP 199 252 252 ASP ASP A . n A 1 200 ALA 200 253 253 ALA ALA A . n A 1 201 GLN 201 254 254 GLN GLN A . n A 1 202 GLY 202 255 255 GLY GLY A . n A 1 203 LYS 203 256 256 LYS LYS A . n A 1 204 PRO 204 257 257 PRO PRO A . n A 1 205 VAL 205 258 258 VAL VAL A . n A 1 206 LEU 206 259 ? ? ? A . n A 1 207 GLU 207 260 ? ? ? A . n A 1 208 GLU 208 261 ? ? ? A . n A 1 209 ASP 209 262 ? ? ? A . n A 1 210 GLU 210 263 ? ? ? A . n A 1 211 GLU 211 264 ? ? ? A . n A 1 212 PHE 212 265 ? ? ? A . n A 1 213 VAL 213 266 266 VAL VAL A . n A 1 214 VAL 214 267 267 VAL VAL A . n A 1 215 SER 215 268 268 SER SER A . n A 1 216 MSE 216 269 269 MSE MSE A . n A 1 217 GLY 217 270 270 GLY GLY A . n A 1 218 LEU 218 271 271 LEU LEU A . n A 1 219 GLY 219 272 272 GLY GLY A . n A 1 220 LYS 220 273 273 LYS LYS A . n A 1 221 LEU 221 274 274 LEU LEU A . n A 1 222 ARG 222 275 275 ARG ARG A . n A 1 223 SER 223 276 276 SER SER A . n A 1 224 ILE 224 277 277 ILE ILE A . n A 1 225 ASN 225 278 278 ASN ASN A . n A 1 226 ARG 226 279 279 ARG ARG A . n A 1 227 VAL 227 280 280 VAL VAL A . n A 1 228 LEU 228 281 281 LEU LEU A . n A 1 229 GLY 229 282 282 GLY GLY A . n A 1 230 LEU 230 283 283 LEU LEU A . n A 1 231 ALA 231 284 284 ALA ALA A . n A 1 232 GLY 232 285 285 GLY GLY A . n A 1 233 GLY 233 286 286 GLY GLY A . n A 1 234 VAL 234 287 287 VAL VAL A . n A 1 235 ARG 235 288 288 ARG ARG A . n A 1 236 LYS 236 289 289 LYS LYS A . n A 1 237 VAL 237 290 290 VAL VAL A . n A 1 238 GLN 238 291 291 GLN GLN A . n A 1 239 ALA 239 292 292 ALA ALA A . n A 1 240 ILE 240 293 293 ILE ILE A . n A 1 241 LYS 241 294 294 LYS LYS A . n A 1 242 GLY 242 295 295 GLY GLY A . n A 1 243 ALA 243 296 296 ALA ALA A . n A 1 244 LEU 244 297 297 LEU LEU A . n A 1 245 LEU 245 298 298 LEU LEU A . n A 1 246 GLY 246 299 299 GLY GLY A . n A 1 247 GLY 247 300 300 GLY GLY A . n A 1 248 TYR 248 301 301 TYR TYR A . n A 1 249 LEU 249 302 302 LEU LEU A . n A 1 250 ASP 250 303 303 ASP ASP A . n A 1 251 VAL 251 304 304 VAL VAL A . n A 1 252 LEU 252 305 305 LEU LEU A . n A 1 253 ILE 253 306 306 ILE ILE A . n A 1 254 THR 254 307 307 THR THR A . n A 1 255 ASP 255 308 308 ASP ASP A . n A 1 256 VAL 256 309 309 VAL VAL A . n A 1 257 GLY 257 310 310 GLY GLY A . n A 1 258 THR 258 311 311 THR THR A . n A 1 259 ALA 259 312 312 ALA ALA A . n A 1 260 ARG 260 313 313 ARG ARG A . n A 1 261 GLY 261 314 314 GLY GLY A . n A 1 262 LEU 262 315 315 LEU LEU A . n A 1 263 GLY 263 316 316 GLY GLY A . n A 1 264 GLY 264 317 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1 1 SO4 SO4 A . C 2 SO4 1 2 2 SO4 SO4 A . D 3 HOH 1 318 1 HOH HOH A . D 3 HOH 2 319 2 HOH HOH A . D 3 HOH 3 320 3 HOH HOH A . D 3 HOH 4 321 4 HOH HOH A . D 3 HOH 5 322 5 HOH HOH A . D 3 HOH 6 323 6 HOH HOH A . D 3 HOH 7 324 7 HOH HOH A . D 3 HOH 8 325 8 HOH HOH A . D 3 HOH 9 326 9 HOH HOH A . D 3 HOH 10 327 10 HOH HOH A . D 3 HOH 11 328 11 HOH HOH A . D 3 HOH 12 329 12 HOH HOH A . D 3 HOH 13 330 13 HOH HOH A . D 3 HOH 14 331 14 HOH HOH A . D 3 HOH 15 332 15 HOH HOH A . D 3 HOH 16 333 16 HOH HOH A . D 3 HOH 17 334 17 HOH HOH A . D 3 HOH 18 335 18 HOH HOH A . D 3 HOH 19 336 19 HOH HOH A . D 3 HOH 20 337 20 HOH HOH A . D 3 HOH 21 338 21 HOH HOH A . D 3 HOH 22 339 22 HOH HOH A . D 3 HOH 23 340 23 HOH HOH A . D 3 HOH 24 341 24 HOH HOH A . D 3 HOH 25 342 25 HOH HOH A . D 3 HOH 26 343 26 HOH HOH A . D 3 HOH 27 344 27 HOH HOH A . D 3 HOH 28 345 28 HOH HOH A . D 3 HOH 29 346 29 HOH HOH A . D 3 HOH 30 347 30 HOH HOH A . D 3 HOH 31 348 31 HOH HOH A . D 3 HOH 32 349 32 HOH HOH A . D 3 HOH 33 350 33 HOH HOH A . D 3 HOH 34 351 34 HOH HOH A . D 3 HOH 35 352 35 HOH HOH A . D 3 HOH 36 353 36 HOH HOH A . D 3 HOH 37 354 37 HOH HOH A . D 3 HOH 38 355 38 HOH HOH A . D 3 HOH 39 356 39 HOH HOH A . D 3 HOH 40 357 40 HOH HOH A . D 3 HOH 41 358 41 HOH HOH A . D 3 HOH 42 359 42 HOH HOH A . D 3 HOH 43 360 43 HOH HOH A . D 3 HOH 44 361 44 HOH HOH A . D 3 HOH 45 362 45 HOH HOH A . D 3 HOH 46 363 46 HOH HOH A . D 3 HOH 47 364 47 HOH HOH A . D 3 HOH 48 365 48 HOH HOH A . D 3 HOH 49 366 49 HOH HOH A . D 3 HOH 50 367 50 HOH HOH A . D 3 HOH 51 368 51 HOH HOH A . D 3 HOH 52 369 52 HOH HOH A . D 3 HOH 53 370 53 HOH HOH A . D 3 HOH 54 371 54 HOH HOH A . D 3 HOH 55 372 55 HOH HOH A . D 3 HOH 56 373 56 HOH HOH A . D 3 HOH 57 374 57 HOH HOH A . D 3 HOH 58 375 58 HOH HOH A . D 3 HOH 59 376 59 HOH HOH A . D 3 HOH 60 377 60 HOH HOH A . D 3 HOH 61 378 61 HOH HOH A . D 3 HOH 62 379 62 HOH HOH A . D 3 HOH 63 380 63 HOH HOH A . D 3 HOH 64 381 64 HOH HOH A . D 3 HOH 65 382 65 HOH HOH A . D 3 HOH 66 383 66 HOH HOH A . D 3 HOH 67 384 67 HOH HOH A . D 3 HOH 68 385 68 HOH HOH A . D 3 HOH 69 386 69 HOH HOH A . D 3 HOH 70 387 70 HOH HOH A . D 3 HOH 71 388 71 HOH HOH A . D 3 HOH 72 389 72 HOH HOH A . D 3 HOH 73 390 73 HOH HOH A . D 3 HOH 74 391 74 HOH HOH A . D 3 HOH 75 392 75 HOH HOH A . D 3 HOH 76 393 76 HOH HOH A . D 3 HOH 77 394 77 HOH HOH A . D 3 HOH 78 395 78 HOH HOH A . D 3 HOH 79 396 79 HOH HOH A . D 3 HOH 80 397 80 HOH HOH A . D 3 HOH 81 398 81 HOH HOH A . D 3 HOH 82 399 82 HOH HOH A . D 3 HOH 83 400 83 HOH HOH A . D 3 HOH 84 401 84 HOH HOH A . D 3 HOH 85 402 85 HOH HOH A . D 3 HOH 86 403 86 HOH HOH A . D 3 HOH 87 404 87 HOH HOH A . D 3 HOH 88 405 88 HOH HOH A . D 3 HOH 89 406 89 HOH HOH A . D 3 HOH 90 407 90 HOH HOH A . D 3 HOH 91 408 91 HOH HOH A . D 3 HOH 92 409 92 HOH HOH A . D 3 HOH 93 410 93 HOH HOH A . D 3 HOH 94 411 94 HOH HOH A . D 3 HOH 95 412 95 HOH HOH A . D 3 HOH 96 413 96 HOH HOH A . D 3 HOH 97 414 97 HOH HOH A . D 3 HOH 98 415 98 HOH HOH A . D 3 HOH 99 416 99 HOH HOH A . D 3 HOH 100 417 100 HOH HOH A . D 3 HOH 101 418 101 HOH HOH A . D 3 HOH 102 419 102 HOH HOH A . D 3 HOH 103 420 103 HOH HOH A . D 3 HOH 104 421 104 HOH HOH A . D 3 HOH 105 422 105 HOH HOH A . D 3 HOH 106 423 106 HOH HOH A . D 3 HOH 107 424 107 HOH HOH A . D 3 HOH 108 425 108 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 19 A MSE 72 ? MET SELENOMETHIONINE 2 A MSE 73 A MSE 126 ? MET SELENOMETHIONINE 3 A MSE 77 A MSE 130 ? MET SELENOMETHIONINE 4 A MSE 140 A MSE 193 ? MET SELENOMETHIONINE 5 A MSE 216 A MSE 269 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-09-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.100 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 13180 _diffrn_reflns.pdbx_Rmerge_I_obs 0.081 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.86 _diffrn_reflns.av_sigmaI_over_netI 10.60 _diffrn_reflns.pdbx_redundancy 7.70 _diffrn_reflns.pdbx_percent_possible_obs 89.50 _diffrn_reflns.number 100848 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 4.52 50.00 ? ? 0.068 ? 5.540 8.00 87.20 1 3.59 4.52 ? ? 0.057 ? 2.858 8.30 92.00 1 3.14 3.59 ? ? 0.071 ? 1.952 8.50 92.60 1 2.85 3.14 ? ? 0.092 ? 1.406 8.40 95.80 1 2.65 2.85 ? ? 0.129 ? 1.264 8.30 95.70 1 2.49 2.65 ? ? 0.163 ? 0.995 8.40 96.10 1 2.37 2.49 ? ? 0.198 ? 0.908 8.20 94.10 1 2.26 2.37 ? ? 0.250 ? 0.923 7.50 88.50 1 2.18 2.26 ? ? 0.343 ? 0.994 5.40 79.90 1 2.10 2.18 ? ? 0.434 ? 0.871 4.40 72.70 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 10.6446 18.7933 74.9177 -0.1832 -0.1205 -0.0818 -0.0099 0.0001 -0.0205 1.6204 2.1248 7.5657 0.3060 -0.4263 0.3439 0.0367 0.0364 -0.0731 0.0242 0.0768 -0.0506 0.0027 -0.3588 0.0422 'X-RAY DIFFRACTION' 2 ? refined 16.9093 6.9709 73.5901 -0.0664 -0.0947 -0.1110 0.0287 0.0194 0.0086 0.7381 1.9998 6.1228 -0.3976 0.9824 -1.0577 -0.0082 -0.1515 0.1596 -0.0068 -0.0968 -0.1978 -0.0023 0.7808 0.4433 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 6 A 68 ? A 59 A 121 'X-RAY DIFFRACTION' ? 2 2 A 79 A 164 ? A 132 A 217 'X-RAY DIFFRACTION' ? # loop_ _pdbx_phasing_MAD_set.id _pdbx_phasing_MAD_set.d_res_high _pdbx_phasing_MAD_set.d_res_low _pdbx_phasing_MAD_set.reflns_acentric _pdbx_phasing_MAD_set.loc_acentric _pdbx_phasing_MAD_set.power_acentric _pdbx_phasing_MAD_set.R_cullis_acentric _pdbx_phasing_MAD_set.reflns_centric _pdbx_phasing_MAD_set.loc_centric _pdbx_phasing_MAD_set.power_centric _pdbx_phasing_MAD_set.R_cullis_centric 1 2.10 42.11 12982 0.100 0.000 1.520 139 0.100 0.000 1.000 2 2.10 42.11 10768 13.900 0.510 0.930 118 15.300 0.510 0.890 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.loc_acentric _pdbx_phasing_MAD_set_shell.power_acentric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.loc_centric _pdbx_phasing_MAD_set_shell.power_centric _pdbx_phasing_MAD_set_shell.R_cullis_centric 1 12.45 42.11 51 1.100 0.000 2.710 1 0.400 0.000 1.000 1 7.31 12.45 234 0.500 0.000 1.080 5 0.300 0.000 1.000 1 5.17 7.31 559 0.500 0.000 1.700 13 0.200 0.000 1.000 1 4.00 5.17 1017 0.300 0.000 1.100 15 0.200 0.000 1.000 1 3.26 4.00 1642 0.200 0.000 1.170 25 0.100 0.000 1.000 1 2.75 3.26 2412 0.100 0.000 1.850 33 0.000 0.000 1.000 1 2.38 2.75 3346 0.100 0.000 7.170 29 0.000 0.000 1.000 1 2.10 2.38 3721 0.000 0.000 1.950 18 0.000 0.000 1.000 2 12.45 42.11 50 16.300 2.130 0.690 1 29.100 0.780 0.560 2 7.31 12.45 233 14.800 1.730 0.680 5 18.500 1.400 0.770 2 5.17 7.31 559 14.900 1.340 0.760 13 23.500 0.630 0.750 2 4.00 5.17 1017 16.500 0.890 0.880 15 15.600 0.780 0.990 2 3.26 4.00 1641 14.900 0.630 0.920 25 13.400 0.630 0.850 2 2.75 3.26 2412 11.700 0.470 0.950 33 13.900 0.280 0.970 2 2.38 2.75 3270 12.600 0.250 0.990 23 11.300 0.190 1.010 2 2.10 2.38 1586 16.800 0.130 1.000 3 29.600 0.040 1.000 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso _pdbx_phasing_MAD_set_site.occupancy 1 Se -0.215 -0.749 -0.184 78.31342 0.000 2 Se -0.469 -0.768 -0.025 73.04219 0.000 3 Se -0.289 -0.104 -0.251 86.98933 0.000 4 Se -0.189 -0.546 -0.253 75.62676 0.000 5 Se -0.563 -0.012 -0.123 67.71538 0.000 6 Se -0.092 -0.192 -0.011 639.30438 0.000 7 Se -0.215 -0.749 -0.184 77.12099 -0.207 8 Se -0.471 -0.766 -0.025 60.76777 -0.275 9 Se -0.290 -0.102 -0.250 84.10966 -0.286 10 Se -0.189 -0.547 -0.253 76.52405 -0.264 11 Se -0.564 -0.013 -0.123 67.04011 -0.203 12 Se -0.085 -0.189 -0.010 620.20215 -0.100 # loop_ _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric 12.45 42.11 52 0.807 1 0.987 51 0.803 7.31 12.45 239 0.803 5 0.687 234 0.805 5.17 7.31 572 0.751 13 0.587 559 0.754 4.00 5.17 1032 0.672 15 0.309 1017 0.677 3.26 4.00 1667 0.539 25 0.291 1642 0.542 2.75 3.26 2445 0.368 33 0.167 2412 0.370 2.38 2.75 3375 0.150 29 0.032 3346 0.151 2.10 2.38 3739 0.059 18 0.002 3721 0.059 # _pdbx_phasing_dm.entry_id 2R5F _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 13121 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 6.160 100.000 48.500 ? ? ? 0.880 ? ? 506 4.890 6.160 43.000 ? ? ? 0.913 ? ? 511 4.290 4.890 42.400 ? ? ? 0.930 ? ? 508 3.900 4.290 42.500 ? ? ? 0.921 ? ? 519 3.640 3.900 45.500 ? ? ? 0.916 ? ? 501 3.430 3.640 47.800 ? ? ? 0.908 ? ? 511 3.260 3.430 50.800 ? ? ? 0.919 ? ? 508 3.120 3.260 55.200 ? ? ? 0.863 ? ? 506 3.010 3.120 55.600 ? ? ? 0.885 ? ? 501 2.910 3.010 62.600 ? ? ? 0.875 ? ? 514 2.820 2.910 63.200 ? ? ? 0.861 ? ? 523 2.730 2.820 64.200 ? ? ? 0.816 ? ? 527 2.660 2.730 66.800 ? ? ? 0.799 ? ? 565 2.590 2.660 71.900 ? ? ? 0.810 ? ? 556 2.530 2.590 72.000 ? ? ? 0.812 ? ? 607 2.470 2.530 73.900 ? ? ? 0.805 ? ? 581 2.410 2.470 77.600 ? ? ? 0.818 ? ? 619 2.360 2.410 78.100 ? ? ? 0.792 ? ? 618 2.310 2.360 82.900 ? ? ? 0.723 ? ? 606 2.260 2.310 80.600 ? ? ? 0.747 ? ? 594 2.220 2.260 79.900 ? ? ? 0.668 ? ? 602 2.180 2.220 84.000 ? ? ? 0.758 ? ? 546 2.140 2.180 83.200 ? ? ? 0.694 ? ? 553 2.100 2.140 84.700 ? ? ? 0.671 ? ? 539 # _phasing.method MAD # _phasing_MAD.entry_id 2R5F _phasing_MAD.pdbx_d_res_high 2.10 _phasing_MAD.pdbx_d_res_low 42.11 _phasing_MAD.pdbx_reflns 13121 _phasing_MAD.pdbx_fom 0.296 _phasing_MAD.pdbx_reflns_centric 139 _phasing_MAD.pdbx_fom_centric 0.219 _phasing_MAD.pdbx_reflns_acentric 12982 _phasing_MAD.pdbx_fom_acentric 0.296 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 MLPHARE . ? other 'Z.Otwinowski or E.Dodson' 'ccp4@dl.ac.uk, ccp4@yorvic.york.ac.uk' phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 DM 5.0 ? program 'K. Cowtan' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 5 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 7 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 9 HKL-3000 . ? ? ? ? phasing ? ? ? 10 SHELXD . ? ? ? ? phasing ? ? ? 11 SHELXE . ? ? ? ? 'model building' ? ? ? 12 SOLVE . ? ? ? ? phasing ? ? ? 13 RESOLVE . ? ? ? ? phasing ? ? ? 14 ARP/wARP . ? ? ? ? 'model building' ? ? ? 15 CCP4 . ? ? ? ? phasing ? ? ? 16 O . ? ? ? ? 'model building' ? ? ? 17 Coot . ? ? ? ? 'model building' ? ? ? 18 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 188 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 420 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 SER _pdbx_validate_rmsd_bond.auth_seq_id_1 177 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 O _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 SER _pdbx_validate_rmsd_bond.auth_seq_id_2 177 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.447 _pdbx_validate_rmsd_bond.bond_target_value 1.229 _pdbx_validate_rmsd_bond.bond_deviation 0.218 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 PRO _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 176 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 SER _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 177 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 142.87 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 54 ? A SER 1 2 1 Y 1 A ASN 55 ? A ASN 2 3 1 Y 1 A ALA 56 ? A ALA 3 4 1 Y 1 A ARG 57 ? A ARG 4 5 1 Y 1 A PRO 58 ? A PRO 5 6 1 Y 1 A GLN 133 ? A GLN 80 7 1 Y 1 A PRO 134 ? A PRO 81 8 1 Y 1 A ASN 151 ? A ASN 98 9 1 Y 1 A LYS 152 ? A LYS 99 10 1 Y 1 A GLN 178 ? A GLN 125 11 1 Y 1 A SER 179 ? A SER 126 12 1 Y 1 A ILE 180 ? A ILE 127 13 1 Y 1 A GLU 181 ? A GLU 128 14 1 Y 1 A GLN 182 ? A GLN 129 15 1 Y 1 A SER 183 ? A SER 130 16 1 Y 1 A VAL 184 ? A VAL 131 17 1 Y 1 A GLU 185 ? A GLU 132 18 1 Y 1 A SER 186 ? A SER 133 19 1 Y 1 A LYS 187 ? A LYS 134 20 1 Y 1 A PRO 218 ? A PRO 165 21 1 Y 1 A SER 219 ? A SER 166 22 1 Y 1 A GLN 220 ? A GLN 167 23 1 Y 1 A LEU 221 ? A LEU 168 24 1 Y 1 A LEU 222 ? A LEU 169 25 1 Y 1 A ARG 223 ? A ARG 170 26 1 Y 1 A ASN 224 ? A ASN 171 27 1 Y 1 A SER 225 ? A SER 172 28 1 Y 1 A GLY 226 ? A GLY 173 29 1 Y 1 A ASN 227 ? A ASN 174 30 1 Y 1 A TYR 228 ? A TYR 175 31 1 Y 1 A TYR 229 ? A TYR 176 32 1 Y 1 A THR 230 ? A THR 177 33 1 Y 1 A GLU 231 ? A GLU 178 34 1 Y 1 A ASP 232 ? A ASP 179 35 1 Y 1 A MSE 233 ? A MSE 180 36 1 Y 1 A LEU 234 ? A LEU 181 37 1 Y 1 A ARG 235 ? A ARG 182 38 1 Y 1 A VAL 236 ? A VAL 183 39 1 Y 1 A LEU 259 ? A LEU 206 40 1 Y 1 A GLU 260 ? A GLU 207 41 1 Y 1 A GLU 261 ? A GLU 208 42 1 Y 1 A ASP 262 ? A ASP 209 43 1 Y 1 A GLU 263 ? A GLU 210 44 1 Y 1 A GLU 264 ? A GLU 211 45 1 Y 1 A PHE 265 ? A PHE 212 46 1 Y 1 A GLY 317 ? A GLY 264 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #