HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 04-SEP-07 2R5S TITLE THE CRYSTAL STRUCTURE OF A DOMAIN OF PROTEIN VP0806 (UNKNOWN FUNCTION) TITLE 2 FROM VIBRIO PARAHAEMOLYTICUS RIMD 2210633 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN VP0806; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DOMAIN: RESIDUES 112-284; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 223926; SOURCE 4 STRAIN: RIMD 2210633; SOURCE 5 GENE: VP0806; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS APC090868.1, PROTEIN VP0806, VIBRIO PARAHAEMOLYTICUS RIMD 2210633, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,R.WU,J.ABDULLAH,L.FREEMAN,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 20-NOV-24 2R5S 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2R5S 1 VERSN REVDAT 2 24-FEB-09 2R5S 1 VERSN REVDAT 1 18-SEP-07 2R5S 0 JRNL AUTH K.TAN,R.WU,J.ABDULLAH,L.FREEMAN,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A DOMAIN OF PROTEIN VP0806 (UNKNOWN JRNL TITL 2 FUNCTION) FROM VIBRIO PARAHAEMOLYTICUS RIMD 2210633. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 18728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1038 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2712 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 45.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.14000 REMARK 3 B22 (A**2) : -1.62000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.309 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.221 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.863 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2819 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3801 ; 2.073 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 6.685 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;45.574 ;26.875 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;21.889 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.561 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 432 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2084 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1390 ; 0.254 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1941 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 107 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.273 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.385 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1763 ; 0.995 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2719 ; 1.686 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1176 ; 2.994 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1080 ; 4.501 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0760 72.6610 45.2150 REMARK 3 T TENSOR REMARK 3 T11: -0.3687 T22: 0.0814 REMARK 3 T33: -0.1911 T12: 0.0222 REMARK 3 T13: 0.0321 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 2.1936 L22: 5.6791 REMARK 3 L33: 4.4904 L12: 1.2425 REMARK 3 L13: -0.6606 L23: -0.4096 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.1421 S13: 0.0275 REMARK 3 S21: -0.3747 S22: 0.0131 S23: 0.1822 REMARK 3 S31: -0.0226 S32: -0.1248 S33: -0.0023 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4720 45.0900 43.2250 REMARK 3 T TENSOR REMARK 3 T11: -0.3478 T22: 0.1199 REMARK 3 T33: -0.1421 T12: 0.0543 REMARK 3 T13: 0.0554 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 1.5798 L22: 4.2514 REMARK 3 L33: 8.2302 L12: 0.7408 REMARK 3 L13: -0.9440 L23: 1.4227 REMARK 3 S TENSOR REMARK 3 S11: -0.1986 S12: -0.0857 S13: 0.0249 REMARK 3 S21: 0.2528 S22: -0.1115 S23: 0.1066 REMARK 3 S31: -0.0087 S32: -0.5449 S33: 0.3101 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 114 B 195 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7970 39.9470 14.6440 REMARK 3 T TENSOR REMARK 3 T11: -0.3263 T22: 0.1077 REMARK 3 T33: -0.1912 T12: 0.0140 REMARK 3 T13: 0.0427 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 1.5514 L22: 6.4604 REMARK 3 L33: 5.0010 L12: 1.2858 REMARK 3 L13: 1.0462 L23: 0.7161 REMARK 3 S TENSOR REMARK 3 S11: -0.0566 S12: 0.1126 S13: 0.0202 REMARK 3 S21: -0.7060 S22: 0.0700 S23: -0.1680 REMARK 3 S31: -0.0120 S32: 0.0987 S33: -0.0133 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 196 B 284 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2390 67.3860 11.8240 REMARK 3 T TENSOR REMARK 3 T11: -0.3899 T22: 0.0962 REMARK 3 T33: -0.2132 T12: 0.0002 REMARK 3 T13: -0.0218 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 2.5640 L22: 4.2854 REMARK 3 L33: 9.9463 L12: 0.6338 REMARK 3 L13: 1.6789 L23: -0.6027 REMARK 3 S TENSOR REMARK 3 S11: -0.0793 S12: -0.0005 S13: 0.0666 REMARK 3 S21: 0.2225 S22: -0.1746 S23: -0.0888 REMARK 3 S31: -0.0428 S32: 0.7052 S33: 0.2539 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918, 0.97938 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19762 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 29.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.1M MES, 0.2M CA(OAC)2, REMARK 280 PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 26.50050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.23800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 26.50050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 58.23800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS EXPERIMENTALLY REMARK 300 UNKNOWN. FROM MOLECULAR PACKING, THE DOMAIN IS LIKELY MONOMERIC. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 313 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 109 REMARK 465 ASN A 110 REMARK 465 ALA A 111 REMARK 465 SER A 112 REMARK 465 PRO A 113 REMARK 465 SER B 109 REMARK 465 ASN B 110 REMARK 465 ALA B 111 REMARK 465 SER B 112 REMARK 465 PRO B 113 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 178 OH TYR B 178 4556 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 163 73.50 -103.43 REMARK 500 GLU A 198 76.62 -113.67 REMARK 500 ASN A 215 91.49 -59.78 REMARK 500 GLU B 115 -70.70 -36.11 REMARK 500 GLN B 163 68.00 -107.82 REMARK 500 ASP B 180 -166.58 -100.38 REMARK 500 ARG B 231 49.25 -91.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 286 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC90868.1 RELATED DB: TARGETDB DBREF 2R5S A 112 284 UNP Q87RI8 Q87RI8_VIBPA 112 284 DBREF 2R5S B 112 284 UNP Q87RI8 Q87RI8_VIBPA 112 284 SEQADV 2R5S SER A 109 UNP Q87RI8 EXPRESSION TAG SEQADV 2R5S ASN A 110 UNP Q87RI8 EXPRESSION TAG SEQADV 2R5S ALA A 111 UNP Q87RI8 EXPRESSION TAG SEQADV 2R5S SER B 109 UNP Q87RI8 EXPRESSION TAG SEQADV 2R5S ASN B 110 UNP Q87RI8 EXPRESSION TAG SEQADV 2R5S ALA B 111 UNP Q87RI8 EXPRESSION TAG SEQRES 1 A 176 SER ASN ALA SER PRO ASP GLU GLN LEU LEU LYS GLN VAL SEQRES 2 A 176 SER GLU LEU LEU GLN GLN GLY GLU HIS ALA GLN ALA LEU SEQRES 3 A 176 ASN VAL ILE GLN THR LEU SER ASP GLU LEU GLN SER ARG SEQRES 4 A 176 GLY ASP VAL LYS LEU ALA LYS ALA ASP CYS LEU LEU GLU SEQRES 5 A 176 THR LYS GLN PHE GLU LEU ALA GLN GLU LEU LEU ALA THR SEQRES 6 A 176 ILE PRO LEU GLU TYR GLN ASP ASN SER TYR LYS SER LEU SEQRES 7 A 176 ILE ALA LYS LEU GLU LEU HIS GLN GLN ALA ALA GLU SER SEQRES 8 A 176 PRO GLU LEU LYS ARG LEU GLU GLN GLU LEU ALA ALA ASN SEQRES 9 A 176 PRO ASP ASN PHE GLU LEU ALA CYS GLU LEU ALA VAL GLN SEQRES 10 A 176 TYR ASN GLN VAL GLY ARG ASP GLU GLU ALA LEU GLU LEU SEQRES 11 A 176 LEU TRP ASN ILE LEU LYS VAL ASN LEU GLY ALA GLN ASP SEQRES 12 A 176 GLY GLU VAL LYS LYS THR PHE MSE ASP ILE LEU SER ALA SEQRES 13 A 176 LEU GLY GLN GLY ASN ALA ILE ALA SER LYS TYR ARG ARG SEQRES 14 A 176 GLN LEU TYR SER ILE LEU TYR SEQRES 1 B 176 SER ASN ALA SER PRO ASP GLU GLN LEU LEU LYS GLN VAL SEQRES 2 B 176 SER GLU LEU LEU GLN GLN GLY GLU HIS ALA GLN ALA LEU SEQRES 3 B 176 ASN VAL ILE GLN THR LEU SER ASP GLU LEU GLN SER ARG SEQRES 4 B 176 GLY ASP VAL LYS LEU ALA LYS ALA ASP CYS LEU LEU GLU SEQRES 5 B 176 THR LYS GLN PHE GLU LEU ALA GLN GLU LEU LEU ALA THR SEQRES 6 B 176 ILE PRO LEU GLU TYR GLN ASP ASN SER TYR LYS SER LEU SEQRES 7 B 176 ILE ALA LYS LEU GLU LEU HIS GLN GLN ALA ALA GLU SER SEQRES 8 B 176 PRO GLU LEU LYS ARG LEU GLU GLN GLU LEU ALA ALA ASN SEQRES 9 B 176 PRO ASP ASN PHE GLU LEU ALA CYS GLU LEU ALA VAL GLN SEQRES 10 B 176 TYR ASN GLN VAL GLY ARG ASP GLU GLU ALA LEU GLU LEU SEQRES 11 B 176 LEU TRP ASN ILE LEU LYS VAL ASN LEU GLY ALA GLN ASP SEQRES 12 B 176 GLY GLU VAL LYS LYS THR PHE MSE ASP ILE LEU SER ALA SEQRES 13 B 176 LEU GLY GLN GLY ASN ALA ILE ALA SER LYS TYR ARG ARG SEQRES 14 B 176 GLN LEU TYR SER ILE LEU TYR MODRES 2R5S MSE A 259 MET SELENOMETHIONINE MODRES 2R5S MSE B 259 MET SELENOMETHIONINE HET MSE A 259 8 HET MSE B 259 8 HET MES A 4 12 HET EDO A 2 4 HET EDO A 3 4 HET ACT B 1 4 HET MES B 285 12 HET MES B 2 12 HET MES B 3 12 HET EDO B 286 4 HETNAM MSE SELENOMETHIONINE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 MES 4(C6 H13 N O4 S) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 6 ACT C2 H3 O2 1- FORMUL 11 HOH *60(H2 O) HELIX 1 1 GLN A 116 GLN A 127 1 12 HELIX 2 2 GLU A 129 THR A 139 1 11 HELIX 3 3 SER A 141 SER A 146 1 6 HELIX 4 4 ARG A 147 THR A 161 1 15 HELIX 5 5 GLN A 163 ALA A 172 1 10 HELIX 6 6 THR A 173 ILE A 174 5 2 HELIX 7 7 PRO A 175 GLN A 179 5 5 HELIX 8 8 ASP A 180 ALA A 197 1 18 HELIX 9 9 SER A 199 ASN A 212 1 14 HELIX 10 10 ASN A 215 VAL A 229 1 15 HELIX 11 11 ARG A 231 LYS A 244 1 14 HELIX 12 12 GLY A 252 GLY A 266 1 15 HELIX 13 13 ASN A 269 LEU A 283 1 15 HELIX 14 14 GLN B 116 GLN B 127 1 12 HELIX 15 15 GLU B 129 LEU B 140 1 12 HELIX 16 16 SER B 141 SER B 146 1 6 HELIX 17 17 ARG B 147 THR B 161 1 15 HELIX 18 18 GLN B 163 ALA B 172 1 10 HELIX 19 19 THR B 173 ILE B 174 5 2 HELIX 20 20 PRO B 175 GLN B 179 5 5 HELIX 21 21 ASP B 180 ALA B 197 1 18 HELIX 22 22 SER B 199 ASN B 212 1 14 HELIX 23 23 ASN B 215 VAL B 229 1 15 HELIX 24 24 ARG B 231 LYS B 244 1 14 HELIX 25 25 GLY B 252 GLY B 266 1 15 HELIX 26 26 ASN B 269 LEU B 283 1 15 LINK C PHE A 258 N MSE A 259 1555 1555 1.34 LINK C MSE A 259 N ASP A 260 1555 1555 1.33 LINK C PHE B 258 N MSE B 259 1555 1555 1.31 LINK C MSE B 259 N ASP B 260 1555 1555 1.33 SITE 1 AC1 5 GLU B 237 ASN B 241 LYS B 244 TYR B 284 SITE 2 AC1 5 HOH B 311 SITE 1 AC2 6 LEU A 118 VAL A 121 SER A 122 ASP A 149 SITE 2 AC2 6 ALA A 153 HOH A 287 SITE 1 AC3 7 LYS A 274 ARG A 277 GLN A 278 TYR A 280 SITE 2 AC3 7 SER A 281 HOH A 289 MES B 285 SITE 1 AC4 5 HIS A 193 ALA A 196 GLN A 228 VAL A 229 SITE 2 AC4 5 MES B 2 SITE 1 AC5 5 EDO A 2 LYS A 274 TYR A 280 LEU B 192 SITE 2 AC5 5 HIS B 193 SITE 1 AC6 4 EDO A 3 HIS A 193 LYS B 274 TYR B 280 SITE 1 AC7 4 LEU B 118 LYS B 119 SER B 122 ASP B 149 SITE 1 AC8 3 VAL B 245 ASN B 246 LEU B 247 CRYST1 53.001 116.476 62.224 90.00 88.75 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018868 0.000000 -0.000412 0.00000 SCALE2 0.000000 0.008585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016075 0.00000