HEADER OXIDOREDUCTASE 04-SEP-07 2R5V TITLE HYDROXYMANDELATE SYNTHASE CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PCZA361.1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.13.11.46; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS ORIENTALIS; SOURCE 3 ORGANISM_TAXID: 31958; SOURCE 4 GENE: HMAS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS DIOXYGENASE, NON-HEME IRON, VANCOMYCIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.BROWNLEE,P.HE,G.R.MORAN,D.H.T.HARRISON REVDAT 4 21-FEB-24 2R5V 1 REMARK LINK REVDAT 3 25-OCT-17 2R5V 1 REMARK REVDAT 2 24-FEB-09 2R5V 1 VERSN REVDAT 1 18-MAR-08 2R5V 0 JRNL AUTH J.BROWNLEE,P.HE,G.R.MORAN,D.H.HARRISON JRNL TITL TWO ROADS DIVERGED: THE STRUCTURE OF HYDROXYMANDELATE JRNL TITL 2 SYNTHASE FROM AMYCOLATOPSIS ORIENTALIS IN COMPLEX WITH JRNL TITL 3 4-HYDROXYMANDELATE. JRNL REF BIOCHEMISTRY V. 47 2002 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18215022 JRNL DOI 10.1021/BI701438R REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1898 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2599 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5047 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 217 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -1.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.243 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.689 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5174 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7043 ; 1.949 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 670 ; 7.033 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 239 ;35.891 ;24.268 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 748 ; 0.147 ;15.000 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 28 ; 0.009 ;15.000 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 809 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4018 ; 0.306 ; 0.020 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 2180 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 3482 ; 0.241 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 256 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1 ; 1.318 ; 0.200 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 42 ; 2.222 ; 0.200 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 13 ; 3.320 ; 0.200 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3420 ; 5.084 ; 1.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000044463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5957 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38006 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.08, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-20% PEG 3350, 100MM PHOSPHATE, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.97550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.98775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.96325 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 108 REMARK 465 GLN A 349 REMARK 465 SER A 350 REMARK 465 GLU A 351 REMARK 465 PHE A 352 REMARK 465 GLY A 353 REMARK 465 ALA A 354 REMARK 465 ALA A 355 REMARK 465 ARG A 356 REMARK 465 ARG A 357 REMARK 465 MET B 1 REMARK 465 SER B 107 REMARK 465 GLU B 108 REMARK 465 ALA B 109 REMARK 465 ASP B 130 REMARK 465 GLY B 131 REMARK 465 THR B 132 REMARK 465 SER B 133 REMARK 465 ALA B 134 REMARK 465 ASP B 145 REMARK 465 VAL B 146 REMARK 465 THR B 147 REMARK 465 ASN B 148 REMARK 465 HIS B 149 REMARK 465 GLY B 150 REMARK 465 LYS B 151 REMARK 465 GLY B 152 REMARK 465 ASP B 153 REMARK 465 GLN B 349 REMARK 465 SER B 350 REMARK 465 GLU B 351 REMARK 465 PHE B 352 REMARK 465 GLY B 353 REMARK 465 ALA B 354 REMARK 465 ALA B 355 REMARK 465 ARG B 356 REMARK 465 ARG B 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CB CG CD OE1 NE2 REMARK 470 GLN A 49 CD OE1 NE2 REMARK 470 ARG A 61 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 145 OD1 OD2 REMARK 470 GLU A 262 CD OE1 OE2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 GLU A 276 CG CD OE1 OE2 REMARK 470 ARG A 346 NE CZ NH1 NH2 REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 ASP B 60 CG OD1 OD2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 90 CD OE1 OE2 REMARK 470 ARG B 101 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 105 CG CD OE1 NE2 REMARK 470 ARG B 251 CD NE CZ NH1 NH2 REMARK 470 GLU B 258 CD OE1 OE2 REMARK 470 GLU B 262 CD OE1 OE2 REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 GLU B 276 CD OE1 OE2 REMARK 470 ARG B 346 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 4158 O HOH A 4185 2.05 REMARK 500 O GLN A 105 O HOH A 4216 2.08 REMARK 500 OE2 GLU A 90 NH1 ARG A 94 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 17 CB GLU A 17 CG 0.212 REMARK 500 TYR A 27 CD1 TYR A 27 CE1 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 185 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 185 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 LEU B 182 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG B 185 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 324 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG B 324 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG B 324 NE - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 105 -78.69 -65.10 REMARK 500 HIS A 106 -6.66 85.70 REMARK 500 GLN A 235 44.90 72.92 REMARK 500 ASP A 248 97.17 -163.45 REMARK 500 THR A 316 -78.63 -85.17 REMARK 500 GLN A 325 70.41 -118.30 REMARK 500 THR A 329 -124.23 -124.76 REMARK 500 LEU B 136 149.24 -37.96 REMARK 500 ASP B 155 64.29 -155.33 REMARK 500 PHE B 188 146.79 -175.13 REMARK 500 ASP B 248 98.56 -163.68 REMARK 500 THR B 282 -41.59 -140.16 REMARK 500 THR B 316 -80.40 -84.03 REMARK 500 GLN B 325 67.78 -114.52 REMARK 500 THR B 329 -118.41 -136.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A4113 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 161 NE2 REMARK 620 2 HIS A 241 NE2 119.9 REMARK 620 3 GLU A 320 OE1 99.3 94.2 REMARK 620 4 HHH A4114 O11 110.1 124.9 99.6 REMARK 620 5 HHH A4114 O8 90.4 85.9 168.6 71.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B4114 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 161 NE2 REMARK 620 2 HIS B 241 NE2 116.0 REMARK 620 3 GLU B 320 OE1 99.0 92.6 REMARK 620 4 HHH B4116 O11 111.9 130.8 90.5 REMARK 620 5 HHH B4116 O8 90.6 94.2 164.5 74.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 4113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 4114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 4115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HHH B 4116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HHH A 4114 DBREF 2R5V A 1 357 UNP O52791 O52791_AMYOR 1 357 DBREF 2R5V B 1 357 UNP O52791 O52791_AMYOR 1 357 SEQRES 1 A 357 MET GLN ASN PHE GLU ILE ASP TYR VAL GLU MET TYR VAL SEQRES 2 A 357 GLU ASN LEU GLU VAL ALA ALA PHE SER TRP VAL ASP LYS SEQRES 3 A 357 TYR ALA PHE ALA VAL ALA GLY THR SER ARG SER ALA ASP SEQRES 4 A 357 HIS ARG SER ILE ALA LEU ARG GLN GLY GLN VAL THR LEU SEQRES 5 A 357 VAL LEU THR GLU PRO THR SER ASP ARG HIS PRO ALA ALA SEQRES 6 A 357 ALA TYR LEU GLN THR HIS GLY ASP GLY VAL ALA ASP ILE SEQRES 7 A 357 ALA MET ALA THR SER ASP VAL ALA ALA ALA TYR GLU ALA SEQRES 8 A 357 ALA VAL ARG ALA GLY ALA GLU ALA VAL ARG ALA PRO GLY SEQRES 9 A 357 GLN HIS SER GLU ALA ALA VAL THR THR ALA THR ILE GLY SEQRES 10 A 357 GLY PHE GLY ASP VAL VAL HIS THR LEU ILE GLN ARG ASP SEQRES 11 A 357 GLY THR SER ALA GLU LEU PRO PRO GLY PHE THR GLY SER SEQRES 12 A 357 MET ASP VAL THR ASN HIS GLY LYS GLY ASP VAL ASP LEU SEQRES 13 A 357 LEU GLY ILE ASP HIS PHE ALA ILE CYS LEU ASN ALA GLY SEQRES 14 A 357 ASP LEU GLY PRO THR VAL GLU TYR TYR GLU ARG ALA LEU SEQRES 15 A 357 GLY PHE ARG GLN ILE PHE ASP GLU HIS ILE VAL VAL GLY SEQRES 16 A 357 ALA GLN ALA MET ASN SER THR VAL VAL GLN SER ALA SER SEQRES 17 A 357 GLY ALA VAL THR LEU THR LEU ILE GLU PRO ASP ARG ASN SEQRES 18 A 357 ALA ASP PRO GLY GLN ILE ASP GLU PHE LEU LYS ASP HIS SEQRES 19 A 357 GLN GLY ALA GLY VAL GLN HIS ILE ALA PHE ASN SER ASN SEQRES 20 A 357 ASP ALA VAL ARG ALA VAL LYS ALA LEU SER GLU ARG GLY SEQRES 21 A 357 VAL GLU PHE LEU LYS THR PRO GLY ALA TYR TYR ASP LEU SEQRES 22 A 357 LEU GLY GLU ARG ILE THR LEU GLN THR HIS SER LEU ASP SEQRES 23 A 357 ASP LEU ARG ALA THR ASN VAL LEU ALA ASP GLU ASP HIS SEQRES 24 A 357 GLY GLY GLN LEU PHE GLN ILE PHE THR ALA SER THR HIS SEQRES 25 A 357 PRO ARG HIS THR ILE PHE PHE GLU VAL ILE GLU ARG GLN SEQRES 26 A 357 GLY ALA GLY THR PHE GLY SER SER ASN ILE LYS ALA LEU SEQRES 27 A 357 TYR GLU ALA VAL GLU LEU GLU ARG THR GLY GLN SER GLU SEQRES 28 A 357 PHE GLY ALA ALA ARG ARG SEQRES 1 B 357 MET GLN ASN PHE GLU ILE ASP TYR VAL GLU MET TYR VAL SEQRES 2 B 357 GLU ASN LEU GLU VAL ALA ALA PHE SER TRP VAL ASP LYS SEQRES 3 B 357 TYR ALA PHE ALA VAL ALA GLY THR SER ARG SER ALA ASP SEQRES 4 B 357 HIS ARG SER ILE ALA LEU ARG GLN GLY GLN VAL THR LEU SEQRES 5 B 357 VAL LEU THR GLU PRO THR SER ASP ARG HIS PRO ALA ALA SEQRES 6 B 357 ALA TYR LEU GLN THR HIS GLY ASP GLY VAL ALA ASP ILE SEQRES 7 B 357 ALA MET ALA THR SER ASP VAL ALA ALA ALA TYR GLU ALA SEQRES 8 B 357 ALA VAL ARG ALA GLY ALA GLU ALA VAL ARG ALA PRO GLY SEQRES 9 B 357 GLN HIS SER GLU ALA ALA VAL THR THR ALA THR ILE GLY SEQRES 10 B 357 GLY PHE GLY ASP VAL VAL HIS THR LEU ILE GLN ARG ASP SEQRES 11 B 357 GLY THR SER ALA GLU LEU PRO PRO GLY PHE THR GLY SER SEQRES 12 B 357 MET ASP VAL THR ASN HIS GLY LYS GLY ASP VAL ASP LEU SEQRES 13 B 357 LEU GLY ILE ASP HIS PHE ALA ILE CYS LEU ASN ALA GLY SEQRES 14 B 357 ASP LEU GLY PRO THR VAL GLU TYR TYR GLU ARG ALA LEU SEQRES 15 B 357 GLY PHE ARG GLN ILE PHE ASP GLU HIS ILE VAL VAL GLY SEQRES 16 B 357 ALA GLN ALA MET ASN SER THR VAL VAL GLN SER ALA SER SEQRES 17 B 357 GLY ALA VAL THR LEU THR LEU ILE GLU PRO ASP ARG ASN SEQRES 18 B 357 ALA ASP PRO GLY GLN ILE ASP GLU PHE LEU LYS ASP HIS SEQRES 19 B 357 GLN GLY ALA GLY VAL GLN HIS ILE ALA PHE ASN SER ASN SEQRES 20 B 357 ASP ALA VAL ARG ALA VAL LYS ALA LEU SER GLU ARG GLY SEQRES 21 B 357 VAL GLU PHE LEU LYS THR PRO GLY ALA TYR TYR ASP LEU SEQRES 22 B 357 LEU GLY GLU ARG ILE THR LEU GLN THR HIS SER LEU ASP SEQRES 23 B 357 ASP LEU ARG ALA THR ASN VAL LEU ALA ASP GLU ASP HIS SEQRES 24 B 357 GLY GLY GLN LEU PHE GLN ILE PHE THR ALA SER THR HIS SEQRES 25 B 357 PRO ARG HIS THR ILE PHE PHE GLU VAL ILE GLU ARG GLN SEQRES 26 B 357 GLY ALA GLY THR PHE GLY SER SER ASN ILE LYS ALA LEU SEQRES 27 B 357 TYR GLU ALA VAL GLU LEU GLU ARG THR GLY GLN SER GLU SEQRES 28 B 357 PHE GLY ALA ALA ARG ARG HET CO A4113 1 HET HHH A4114 12 HET CO B4114 1 HET PO4 B4115 5 HET HHH B4116 12 HETNAM CO COBALT (II) ION HETNAM HHH (2S)-HYDROXY(4-HYDROXYPHENYL)ETHANOIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 3 CO 2(CO 2+) FORMUL 4 HHH 2(C8 H8 O4) FORMUL 6 PO4 O4 P 3- FORMUL 8 HOH *217(H2 O) HELIX 1 1 ASN A 15 ALA A 28 1 14 HELIX 2 2 PRO A 63 GLY A 72 1 10 HELIX 3 3 ASP A 84 ALA A 95 1 12 HELIX 4 4 ASP A 170 GLY A 183 1 14 HELIX 5 5 GLY A 225 GLN A 235 1 11 HELIX 6 6 ASP A 248 ARG A 259 1 12 HELIX 7 7 PRO A 267 LEU A 273 1 7 HELIX 8 8 SER A 284 ASN A 292 1 9 HELIX 9 9 GLY A 331 GLY A 348 1 18 HELIX 10 10 ASN B 15 ALA B 28 1 14 HELIX 11 11 HIS B 62 GLY B 72 1 11 HELIX 12 12 ASP B 84 ALA B 95 1 12 HELIX 13 13 ASP B 170 GLY B 183 1 14 HELIX 14 14 GLY B 225 GLN B 235 1 11 HELIX 15 15 ASP B 248 ARG B 259 1 12 HELIX 16 16 PRO B 267 ILE B 278 1 12 HELIX 17 17 SER B 284 ASN B 292 1 9 HELIX 18 18 GLY B 331 GLY B 348 1 18 SHEET 1 A 9 ALA A 99 GLY A 104 0 SHEET 2 A 9 THR A 113 GLY A 117 -1 O THR A 115 N ARG A 101 SHEET 3 A 9 VAL A 123 GLN A 128 -1 O LEU A 126 N ALA A 114 SHEET 4 A 9 GLY A 74 THR A 82 1 N MET A 80 O THR A 125 SHEET 5 A 9 GLU A 5 TYR A 12 -1 N GLU A 5 O ALA A 81 SHEET 6 A 9 VAL A 50 PRO A 57 1 O VAL A 53 N VAL A 9 SHEET 7 A 9 HIS A 40 GLN A 47 -1 N LEU A 45 O LEU A 52 SHEET 8 A 9 ALA A 30 SER A 37 -1 N ALA A 30 O ARG A 46 SHEET 9 A 9 THR A 141 GLY A 142 -1 O THR A 141 N THR A 34 SHEET 1 B 8 ARG A 185 VAL A 194 0 SHEET 2 B 8 GLN A 197 GLN A 205 -1 O VAL A 203 N PHE A 188 SHEET 3 B 8 THR A 212 PRO A 218 -1 O GLU A 217 N ASN A 200 SHEET 4 B 8 GLY A 158 CYS A 165 1 N ILE A 164 O THR A 214 SHEET 5 B 8 GLY A 238 ASN A 245 -1 O ALA A 243 N ASP A 160 SHEET 6 B 8 PHE A 318 ARG A 324 1 O GLU A 320 N PHE A 244 SHEET 7 B 8 GLY A 301 PHE A 307 -1 N PHE A 304 O GLU A 323 SHEET 8 B 8 LEU A 294 ASP A 298 -1 N ASP A 298 O GLY A 301 SHEET 1 C 9 ALA B 99 GLN B 105 0 SHEET 2 C 9 THR B 112 GLY B 117 -1 O THR B 115 N ARG B 101 SHEET 3 C 9 VAL B 123 GLN B 128 -1 O LEU B 126 N ALA B 114 SHEET 4 C 9 GLY B 74 THR B 82 1 N MET B 80 O THR B 125 SHEET 5 C 9 GLU B 5 TYR B 12 -1 N GLU B 10 O ASP B 77 SHEET 6 C 9 VAL B 50 PRO B 57 1 O VAL B 53 N VAL B 9 SHEET 7 C 9 HIS B 40 GLN B 47 -1 N LEU B 45 O LEU B 52 SHEET 8 C 9 ALA B 30 ARG B 36 -1 N SER B 35 O SER B 42 SHEET 9 C 9 THR B 141 GLY B 142 -1 O THR B 141 N THR B 34 SHEET 1 D 8 ARG B 185 VAL B 194 0 SHEET 2 D 8 GLN B 197 GLN B 205 -1 O MET B 199 N ILE B 192 SHEET 3 D 8 THR B 212 PRO B 218 -1 O GLU B 217 N ASN B 200 SHEET 4 D 8 GLY B 158 CYS B 165 1 N PHE B 162 O THR B 214 SHEET 5 D 8 GLY B 238 ASN B 245 -1 O GLY B 238 N CYS B 165 SHEET 6 D 8 PHE B 318 ARG B 324 1 O GLU B 320 N PHE B 244 SHEET 7 D 8 GLY B 301 PHE B 307 -1 N PHE B 304 O GLU B 323 SHEET 8 D 8 LEU B 294 ASP B 298 -1 N ASP B 298 O GLY B 301 LINK NE2 HIS A 161 CO CO A4113 1555 1555 2.15 LINK NE2 HIS A 241 CO CO A4113 1555 1555 2.24 LINK OE1 GLU A 320 CO CO A4113 1555 1555 2.10 LINK CO CO A4113 O11 HHH A4114 1555 1555 1.82 LINK CO CO A4113 O8 HHH A4114 1555 1555 2.39 LINK NE2 HIS B 161 CO CO B4114 1555 1555 2.15 LINK NE2 HIS B 241 CO CO B4114 1555 1555 2.03 LINK OE1 GLU B 320 CO CO B4114 1555 1555 1.96 LINK CO CO B4114 O11 HHH B4116 1555 1555 2.10 LINK CO CO B4114 O8 HHH B4116 1555 1555 2.46 SITE 1 AC1 3 HIS A 161 HIS A 241 GLU A 320 SITE 1 AC2 3 HIS B 161 HIS B 241 GLU B 320 SITE 1 AC3 6 GLU B 14 GLY B 72 HIS B 312 PRO B 313 SITE 2 AC3 6 ARG B 314 HOH B4239 SITE 1 AC4 10 HIS B 161 PHE B 188 SER B 201 THR B 214 SITE 2 AC4 10 HIS B 241 GLN B 305 GLU B 320 PHE B 330 SITE 3 AC4 10 ILE B 335 LEU B 338 SITE 1 AC5 9 HIS A 161 PHE A 188 SER A 201 THR A 214 SITE 2 AC5 9 HIS A 241 GLN A 305 GLU A 320 PHE A 330 SITE 3 AC5 9 ILE A 335 CRYST1 106.369 106.369 75.951 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009401 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013166 0.00000