data_2R6N # _entry.id 2R6N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2R6N RCSB RCSB044490 WWPDB D_1000044490 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1U9V . unspecified PDB 1U9W . unspecified PDB 1U9X . unspecified # _pdbx_database_status.entry_id 2R6N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-09-06 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cowan-Jacob, S.W.' 1 'Ramage, P.' 2 'Mathis, B.' 3 'Geisse, S.' 4 # _citation.id primary _citation.title 'Novel scaffold for cathepsin K inhibitors.' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 17 _citation.page_first 6096 _citation.page_last 6100 _citation.year 2007 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 0960-894X _citation.journal_id_CSD 1127 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17911019 _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2007.09.047 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Teno, N.' 1 primary 'Miyake, T.' 2 primary 'Ehara, T.' 3 primary 'Irie, O.' 4 primary 'Sakaki, J.' 5 primary 'Ohmori, O.' 6 primary 'Gunji, H.' 7 primary 'Matsuura, N.' 8 primary 'Masuya, K.' 9 primary 'Hitomi, Y.' 10 primary 'Nonomura, K.' 11 primary 'Horiuchi, M.' 12 primary 'Gohda, K.' 13 primary 'Iwasaki, A.' 14 primary 'Umemura, I.' 15 primary 'Tada, S.' 16 primary 'Kometani, M.' 17 primary 'Iwasaki, G.' 18 primary 'Cowan-Jacob, S.W.' 19 primary 'Missbach, M.' 20 primary 'Lattmann, R.' 21 primary 'Betschart, C.' 22 # _cell.length_a 62.400 _cell.length_b 62.400 _cell.length_c 121.800 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 2R6N _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61' _symmetry.entry_id 2R6N _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 169 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cathepsin K' 23737.727 1 3.4.22.38 ? ? ? 2 non-polymer syn '1-{7-cyclohexyl-6-[4-(4-methylpiperazin-1-yl)benzyl]-7H-pyrrolo[2,3-d]pyrimidin-2-yl}methanamine' 418.578 1 ? ? ? ? 3 water nat water 18.015 143 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cathepsin O, Cathepsin X, Cathepsin O2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKN RGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _entity_poly.pdbx_seq_one_letter_code_can ;GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKN RGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ARG n 1 3 ALA n 1 4 PRO n 1 5 ASP n 1 6 SER n 1 7 VAL n 1 8 ASP n 1 9 TYR n 1 10 ARG n 1 11 LYS n 1 12 LYS n 1 13 GLY n 1 14 TYR n 1 15 VAL n 1 16 THR n 1 17 PRO n 1 18 VAL n 1 19 LYS n 1 20 ASN n 1 21 GLN n 1 22 GLY n 1 23 GLN n 1 24 CYS n 1 25 GLY n 1 26 SER n 1 27 CYS n 1 28 TRP n 1 29 ALA n 1 30 PHE n 1 31 SER n 1 32 SER n 1 33 VAL n 1 34 GLY n 1 35 ALA n 1 36 LEU n 1 37 GLU n 1 38 GLY n 1 39 GLN n 1 40 LEU n 1 41 LYS n 1 42 LYS n 1 43 LYS n 1 44 THR n 1 45 GLY n 1 46 LYS n 1 47 LEU n 1 48 LEU n 1 49 ASN n 1 50 LEU n 1 51 SER n 1 52 PRO n 1 53 GLN n 1 54 ASN n 1 55 LEU n 1 56 VAL n 1 57 ASP n 1 58 CYS n 1 59 VAL n 1 60 SER n 1 61 GLU n 1 62 ASN n 1 63 ASP n 1 64 GLY n 1 65 CYS n 1 66 GLY n 1 67 GLY n 1 68 GLY n 1 69 TYR n 1 70 MET n 1 71 THR n 1 72 ASN n 1 73 ALA n 1 74 PHE n 1 75 GLN n 1 76 TYR n 1 77 VAL n 1 78 GLN n 1 79 LYS n 1 80 ASN n 1 81 ARG n 1 82 GLY n 1 83 ILE n 1 84 ASP n 1 85 SER n 1 86 GLU n 1 87 ASP n 1 88 ALA n 1 89 TYR n 1 90 PRO n 1 91 TYR n 1 92 VAL n 1 93 GLY n 1 94 GLN n 1 95 GLU n 1 96 GLU n 1 97 SER n 1 98 CYS n 1 99 MET n 1 100 TYR n 1 101 ASN n 1 102 PRO n 1 103 THR n 1 104 GLY n 1 105 LYS n 1 106 ALA n 1 107 ALA n 1 108 LYS n 1 109 CYS n 1 110 ARG n 1 111 GLY n 1 112 TYR n 1 113 ARG n 1 114 GLU n 1 115 ILE n 1 116 PRO n 1 117 GLU n 1 118 GLY n 1 119 ASN n 1 120 GLU n 1 121 LYS n 1 122 ALA n 1 123 LEU n 1 124 LYS n 1 125 ARG n 1 126 ALA n 1 127 VAL n 1 128 ALA n 1 129 ARG n 1 130 VAL n 1 131 GLY n 1 132 PRO n 1 133 VAL n 1 134 SER n 1 135 VAL n 1 136 ALA n 1 137 ILE n 1 138 ASP n 1 139 ALA n 1 140 SER n 1 141 LEU n 1 142 THR n 1 143 SER n 1 144 PHE n 1 145 GLN n 1 146 PHE n 1 147 TYR n 1 148 SER n 1 149 LYS n 1 150 GLY n 1 151 VAL n 1 152 TYR n 1 153 TYR n 1 154 ASP n 1 155 GLU n 1 156 SER n 1 157 CYS n 1 158 ASN n 1 159 SER n 1 160 ASP n 1 161 ASN n 1 162 LEU n 1 163 ASN n 1 164 HIS n 1 165 ALA n 1 166 VAL n 1 167 LEU n 1 168 ALA n 1 169 VAL n 1 170 GLY n 1 171 TYR n 1 172 GLY n 1 173 ILE n 1 174 GLN n 1 175 LYS n 1 176 GLY n 1 177 ASN n 1 178 LYS n 1 179 HIS n 1 180 TRP n 1 181 ILE n 1 182 ILE n 1 183 LYS n 1 184 ASN n 1 185 SER n 1 186 TRP n 1 187 GLY n 1 188 GLU n 1 189 ASN n 1 190 TRP n 1 191 GLY n 1 192 ASN n 1 193 LYS n 1 194 GLY n 1 195 TYR n 1 196 ILE n 1 197 LEU n 1 198 MET n 1 199 ALA n 1 200 ARG n 1 201 ASN n 1 202 LYS n 1 203 ASN n 1 204 ASN n 1 205 ALA n 1 206 CYS n 1 207 GLY n 1 208 ILE n 1 209 ALA n 1 210 ASN n 1 211 LEU n 1 212 ALA n 1 213 SER n 1 214 PHE n 1 215 PRO n 1 216 LYS n 1 217 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'CTSK, CTSO, CTSO2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fall armyworm' _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus Spodoptera _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain SF21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Virus _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PMBAC-HC9 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CATK_HUMAN _struct_ref.pdbx_db_accession P43235 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKN RGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _struct_ref.pdbx_align_begin 113 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2R6N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 217 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43235 _struct_ref_seq.db_align_beg 113 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 329 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -1 _struct_ref_seq.pdbx_auth_seq_align_end 215 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CKE non-polymer . '1-{7-cyclohexyl-6-[4-(4-methylpiperazin-1-yl)benzyl]-7H-pyrrolo[2,3-d]pyrimidin-2-yl}methanamine' ? 'C25 H34 N6' 418.578 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2R6N _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.88 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 57.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '20 % PEG 4000, 10 % Isopropanol, 0.1 M HEPES pH 7.5, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2000-08-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR591' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2R6N _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 20 _reflns.number_all 19305 _reflns.number_obs 19305 _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs 0.0563 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 43.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 96.9 _reflns_shell.Rmerge_I_obs 0.145 _reflns_shell.meanI_over_sigI_obs 11.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2R6N _refine.ls_d_res_high 1.950 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.100 _refine.ls_number_reflns_obs 19162 _refine.ls_R_factor_R_work 0.156 _refine.ls_R_factor_R_free 0.184 _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 910 _refine.B_iso_mean 21.255 _refine.aniso_B[1][1] -0.805 _refine.aniso_B[2][2] -0.805 _refine.aniso_B[3][3] 1.611 _refine.aniso_B[1][2] -3.472 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.overall_FOM_work_R_set 0.900 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 19305 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1732 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 1906 _refine_hist.d_res_high 1.950 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.005 ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? 1.172 ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 1.167 1.500 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 1.983 2.000 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 1.754 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 3.116 2.500 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 MSI_CNX_TOPPAR:protein_rep.param MSI_CNX_TOPPAR:protein.top 'X-RAY DIFFRACTION' 2 MSI_CNX_TOPPAR:dna-rna_rep.param MSI_CNX_TOPPAR:dna-rna.top 'X-RAY DIFFRACTION' 3 MSI_CNX_TOPPAR:water_rep.param MSI_CNX_TOPPAR:water.top 'X-RAY DIFFRACTION' 4 MSI_CNX_TOPPAR:ion.param MSI_CNX_TOPPAR:ion.top 'X-RAY DIFFRACTION' 5 inh2.par inh2.top 'X-RAY DIFFRACTION' # _struct.entry_id 2R6N _struct.title 'Crystal structure of a pyrrolopyrimidine inhibitor in complex with human Cathepsin K' _struct.pdbx_descriptor 'Cathepsin K (E.C. 3.4.22.38)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2R6N _struct_keywords.text 'covalent bond to inhibitor, Disease mutation, Glycoprotein, Hydrolase, Lysosome, Protease, Thiol protease, Zymogen' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 26 ? GLY A 45 ? SER A 24 GLY A 43 1 ? 20 HELX_P HELX_P2 2 SER A 51 ? VAL A 59 ? SER A 49 VAL A 57 1 ? 9 HELX_P HELX_P3 3 ASP A 63 ? GLY A 67 ? ASP A 61 GLY A 65 5 ? 5 HELX_P HELX_P4 4 TYR A 69 ? ARG A 81 A TYR A 67 ARG A 79 1 ? 13 HELX_P HELX_P5 5 ASN A 101 ? THR A 103 ? ASN A 99 THR A 101 5 ? 3 HELX_P HELX_P6 6 ASN A 119 ? VAL A 130 A ASN A 117 VAL A 128 1 ? 12 HELX_P HELX_P7 7 LEU A 141 ? PHE A 146 ? LEU A 139 PHE A 144 1 ? 6 HELX_P HELX_P8 8 ASN A 204 ? ILE A 208 ? ASN A 202 ILE A 206 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 65 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.029 ? disulf2 disulf ? ? A CYS 58 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 56 A CYS 96 1_555 ? ? ? ? ? ? ? 2.034 ? disulf3 disulf ? ? A CYS 157 SG ? ? ? 1_555 A CYS 206 SG ? ? A CYS 155 A CYS 204 1_555 ? ? ? ? ? ? ? 2.031 ? covale1 covale ? ? A CYS 27 SG ? ? ? 1_555 B CKE . C09 ? ? A CYS 25 A CKE 300 1_555 ? ? ? ? ? ? ? 1.753 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 7 ? ASP A 8 ? VAL A 5 ASP A 6 A 2 HIS A 164 ? GLN A 174 A HIS A 162 GLN A 172 A 3 VAL A 133 ? ILE A 137 ? VAL A 131 ILE A 135 B 1 VAL A 7 ? ASP A 8 ? VAL A 5 ASP A 6 B 2 HIS A 164 ? GLN A 174 A HIS A 162 GLN A 172 B 3 ASN A 177 D LYS A 183 ? ASN A 175 LYS A 181 B 4 TYR A 195 ? ALA A 199 ? TYR A 193 ALA A 197 B 5 VAL A 151 ? TYR A 152 ? VAL A 149 TYR A 150 C 1 ILE A 83 ? ASP A 84 ? ILE A 81 ASP A 82 C 2 LYS A 105 ? ALA A 107 ? LYS A 103 ALA A 105 D 1 GLY A 111 ? GLU A 114 ? GLY A 109 GLU A 112 D 2 SER A 213 ? LYS A 216 ? SER A 211 LYS A 214 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 7 ? N VAL A 5 O TYR A 171 ? O TYR A 169 A 2 3 O ALA A 168 ? O ALA A 166 N VAL A 133 ? N VAL A 131 B 1 2 N VAL A 7 ? N VAL A 5 O TYR A 171 ? O TYR A 169 B 2 3 N LEU A 167 ? N LEU A 165 O LYS A 183 ? O LYS A 181 B 3 4 N ILE A 182 ? N ILE A 180 O ILE A 196 ? O ILE A 194 B 4 5 O LEU A 197 ? O LEU A 195 N TYR A 152 ? N TYR A 150 C 1 2 N ILE A 83 ? N ILE A 81 O ALA A 106 ? O ALA A 104 D 1 2 N GLY A 111 ? N GLY A 109 O LYS A 216 ? O LYS A 214 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 14 _struct_site.details 'BINDING SITE FOR RESIDUE CKE A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 ASP A 5 ? ASP A 3 . ? 6_545 ? 2 AC1 14 SER A 6 ? SER A 4 . ? 6_545 ? 3 AC1 14 GLN A 21 ? GLN A 19 . ? 1_555 ? 4 AC1 14 GLY A 25 ? GLY A 23 . ? 1_555 ? 5 AC1 14 CYS A 27 ? CYS A 25 . ? 1_555 ? 6 AC1 14 GLU A 61 ? GLU A 59 . ? 1_555 ? 7 AC1 14 ASP A 63 ? ASP A 61 . ? 1_555 ? 8 AC1 14 GLY A 66 ? GLY A 64 . ? 1_555 ? 9 AC1 14 GLY A 67 ? GLY A 65 . ? 1_555 ? 10 AC1 14 GLY A 68 ? GLY A 66 . ? 1_555 ? 11 AC1 14 TYR A 69 ? TYR A 67 . ? 1_555 ? 12 AC1 14 ASN A 163 ? ASN A 161 . ? 1_555 ? 13 AC1 14 ILE A 173 ? ILE A 171 . ? 6_545 ? 14 AC1 14 HOH C . ? HOH A 375 . ? 1_555 ? # _atom_sites.entry_id 2R6N _atom_sites.fract_transf_matrix[1][1] 0.016026 _atom_sites.fract_transf_matrix[1][2] 0.009252 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018505 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008210 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 ARG 2 0 0 ARG ARG A . n A 1 3 ALA 3 1 1 ALA ALA A . n A 1 4 PRO 4 2 2 PRO PRO A . n A 1 5 ASP 5 3 3 ASP ASP A . n A 1 6 SER 6 4 4 SER SER A . n A 1 7 VAL 7 5 5 VAL VAL A . n A 1 8 ASP 8 6 6 ASP ASP A . n A 1 9 TYR 9 7 7 TYR TYR A . n A 1 10 ARG 10 8 8 ARG ARG A . n A 1 11 LYS 11 9 9 LYS LYS A . n A 1 12 LYS 12 10 10 LYS LYS A . n A 1 13 GLY 13 11 11 GLY GLY A . n A 1 14 TYR 14 12 12 TYR TYR A . n A 1 15 VAL 15 13 13 VAL VAL A . n A 1 16 THR 16 14 14 THR THR A . n A 1 17 PRO 17 15 15 PRO PRO A . n A 1 18 VAL 18 16 16 VAL VAL A . n A 1 19 LYS 19 17 17 LYS LYS A . n A 1 20 ASN 20 18 18 ASN ASN A . n A 1 21 GLN 21 19 19 GLN GLN A . n A 1 22 GLY 22 20 20 GLY GLY A . n A 1 23 GLN 23 21 21 GLN GLN A . n A 1 24 CYS 24 22 22 CYS CYS A . n A 1 25 GLY 25 23 23 GLY GLY A . n A 1 26 SER 26 24 24 SER SER A . n A 1 27 CYS 27 25 25 CYS CYS A . n A 1 28 TRP 28 26 26 TRP TRP A . n A 1 29 ALA 29 27 27 ALA ALA A . n A 1 30 PHE 30 28 28 PHE PHE A . n A 1 31 SER 31 29 29 SER SER A . n A 1 32 SER 32 30 30 SER SER A . n A 1 33 VAL 33 31 31 VAL VAL A . n A 1 34 GLY 34 32 32 GLY GLY A . n A 1 35 ALA 35 33 33 ALA ALA A . n A 1 36 LEU 36 34 34 LEU LEU A . n A 1 37 GLU 37 35 35 GLU GLU A . n A 1 38 GLY 38 36 36 GLY GLY A . n A 1 39 GLN 39 37 37 GLN GLN A . n A 1 40 LEU 40 38 38 LEU LEU A . n A 1 41 LYS 41 39 39 LYS LYS A . n A 1 42 LYS 42 40 40 LYS LYS A . n A 1 43 LYS 43 41 41 LYS LYS A . n A 1 44 THR 44 42 42 THR THR A . n A 1 45 GLY 45 43 43 GLY GLY A . n A 1 46 LYS 46 44 44 LYS LYS A . n A 1 47 LEU 47 45 45 LEU LEU A . n A 1 48 LEU 48 46 46 LEU LEU A . n A 1 49 ASN 49 47 47 ASN ASN A . n A 1 50 LEU 50 48 48 LEU LEU A . n A 1 51 SER 51 49 49 SER SER A . n A 1 52 PRO 52 50 50 PRO PRO A . n A 1 53 GLN 53 51 51 GLN GLN A . n A 1 54 ASN 54 52 52 ASN ASN A . n A 1 55 LEU 55 53 53 LEU LEU A . n A 1 56 VAL 56 54 54 VAL VAL A . n A 1 57 ASP 57 55 55 ASP ASP A . n A 1 58 CYS 58 56 56 CYS CYS A . n A 1 59 VAL 59 57 57 VAL VAL A . n A 1 60 SER 60 58 58 SER SER A . n A 1 61 GLU 61 59 59 GLU GLU A . n A 1 62 ASN 62 60 60 ASN ASN A . n A 1 63 ASP 63 61 61 ASP ASP A . n A 1 64 GLY 64 62 62 GLY GLY A . n A 1 65 CYS 65 63 63 CYS CYS A . n A 1 66 GLY 66 64 64 GLY GLY A . n A 1 67 GLY 67 65 65 GLY GLY A . n A 1 68 GLY 68 66 66 GLY GLY A . n A 1 69 TYR 69 67 67 TYR TYR A . n A 1 70 MET 70 68 68 MET MET A . n A 1 71 THR 71 69 69 THR THR A . n A 1 72 ASN 72 70 70 ASN ASN A . n A 1 73 ALA 73 71 71 ALA ALA A . n A 1 74 PHE 74 72 72 PHE PHE A . n A 1 75 GLN 75 73 73 GLN GLN A . n A 1 76 TYR 76 74 74 TYR TYR A . n A 1 77 VAL 77 75 75 VAL VAL A . n A 1 78 GLN 78 76 76 GLN GLN A . n A 1 79 LYS 79 77 77 LYS LYS A . n A 1 80 ASN 80 78 78 ASN ASN A . n A 1 81 ARG 81 79 79 ARG ARG A A n A 1 82 GLY 82 80 80 GLY GLY A . n A 1 83 ILE 83 81 81 ILE ILE A . n A 1 84 ASP 84 82 82 ASP ASP A . n A 1 85 SER 85 83 83 SER SER A . n A 1 86 GLU 86 84 84 GLU GLU A . n A 1 87 ASP 87 85 85 ASP ASP A . n A 1 88 ALA 88 86 86 ALA ALA A . n A 1 89 TYR 89 87 87 TYR TYR A . n A 1 90 PRO 90 88 88 PRO PRO A . n A 1 91 TYR 91 89 89 TYR TYR A . n A 1 92 VAL 92 90 90 VAL VAL A . n A 1 93 GLY 93 91 91 GLY GLY A . n A 1 94 GLN 94 92 92 GLN GLN A . n A 1 95 GLU 95 93 93 GLU GLU A . n A 1 96 GLU 96 94 94 GLU GLU A . n A 1 97 SER 97 95 95 SER SER A . n A 1 98 CYS 98 96 96 CYS CYS A . n A 1 99 MET 99 97 97 MET MET A . n A 1 100 TYR 100 98 98 TYR TYR A . n A 1 101 ASN 101 99 99 ASN ASN A . n A 1 102 PRO 102 100 100 PRO PRO A . n A 1 103 THR 103 101 101 THR THR A . n A 1 104 GLY 104 102 102 GLY GLY A . n A 1 105 LYS 105 103 103 LYS LYS A . n A 1 106 ALA 106 104 104 ALA ALA A . n A 1 107 ALA 107 105 105 ALA ALA A . n A 1 108 LYS 108 106 106 LYS LYS A . n A 1 109 CYS 109 107 107 CYS CYS A . n A 1 110 ARG 110 108 108 ARG ARG A . n A 1 111 GLY 111 109 109 GLY GLY A . n A 1 112 TYR 112 110 110 TYR TYR A . n A 1 113 ARG 113 111 111 ARG ARG A . n A 1 114 GLU 114 112 112 GLU GLU A . n A 1 115 ILE 115 113 113 ILE ILE A . n A 1 116 PRO 116 114 114 PRO PRO A . n A 1 117 GLU 117 115 115 GLU GLU A . n A 1 118 GLY 118 116 116 GLY GLY A . n A 1 119 ASN 119 117 117 ASN ASN A . n A 1 120 GLU 120 118 118 GLU GLU A . n A 1 121 LYS 121 119 119 LYS LYS A . n A 1 122 ALA 122 120 120 ALA ALA A . n A 1 123 LEU 123 121 121 LEU LEU A . n A 1 124 LYS 124 122 122 LYS LYS A . n A 1 125 ARG 125 123 123 ARG ARG A . n A 1 126 ALA 126 124 124 ALA ALA A . n A 1 127 VAL 127 125 125 VAL VAL A . n A 1 128 ALA 128 126 126 ALA ALA A . n A 1 129 ARG 129 127 127 ARG ARG A . n A 1 130 VAL 130 128 128 VAL VAL A A n A 1 131 GLY 131 129 129 GLY GLY A . n A 1 132 PRO 132 130 130 PRO PRO A . n A 1 133 VAL 133 131 131 VAL VAL A . n A 1 134 SER 134 132 132 SER SER A . n A 1 135 VAL 135 133 133 VAL VAL A . n A 1 136 ALA 136 134 134 ALA ALA A . n A 1 137 ILE 137 135 135 ILE ILE A . n A 1 138 ASP 138 136 136 ASP ASP A . n A 1 139 ALA 139 137 137 ALA ALA A . n A 1 140 SER 140 138 138 SER SER A . n A 1 141 LEU 141 139 139 LEU LEU A . n A 1 142 THR 142 140 140 THR THR A . n A 1 143 SER 143 141 141 SER SER A . n A 1 144 PHE 144 142 142 PHE PHE A . n A 1 145 GLN 145 143 143 GLN GLN A . n A 1 146 PHE 146 144 144 PHE PHE A . n A 1 147 TYR 147 145 145 TYR TYR A . n A 1 148 SER 148 146 146 SER SER A . n A 1 149 LYS 149 147 147 LYS LYS A . n A 1 150 GLY 150 148 148 GLY GLY A . n A 1 151 VAL 151 149 149 VAL VAL A . n A 1 152 TYR 152 150 150 TYR TYR A . n A 1 153 TYR 153 151 151 TYR TYR A . n A 1 154 ASP 154 152 152 ASP ASP A A n A 1 155 GLU 155 153 153 GLU GLU A . n A 1 156 SER 156 154 154 SER SER A . n A 1 157 CYS 157 155 155 CYS CYS A . n A 1 158 ASN 158 156 156 ASN ASN A . n A 1 159 SER 159 157 157 SER SER A . n A 1 160 ASP 160 158 158 ASP ASP A . n A 1 161 ASN 161 159 159 ASN ASN A A n A 1 162 LEU 162 160 160 LEU LEU A . n A 1 163 ASN 163 161 161 ASN ASN A . n A 1 164 HIS 164 162 162 HIS HIS A . n A 1 165 ALA 165 163 163 ALA ALA A . n A 1 166 VAL 166 164 164 VAL VAL A . n A 1 167 LEU 167 165 165 LEU LEU A . n A 1 168 ALA 168 166 166 ALA ALA A . n A 1 169 VAL 169 167 167 VAL VAL A . n A 1 170 GLY 170 168 168 GLY GLY A . n A 1 171 TYR 171 169 169 TYR TYR A . n A 1 172 GLY 172 170 170 GLY GLY A . n A 1 173 ILE 173 171 171 ILE ILE A . n A 1 174 GLN 174 172 172 GLN GLN A A n A 1 175 LYS 175 173 173 LYS LYS A B n A 1 176 GLY 176 174 174 GLY GLY A C n A 1 177 ASN 177 175 175 ASN ASN A D n A 1 178 LYS 178 176 176 LYS LYS A . n A 1 179 HIS 179 177 177 HIS HIS A . n A 1 180 TRP 180 178 178 TRP TRP A . n A 1 181 ILE 181 179 179 ILE ILE A . n A 1 182 ILE 182 180 180 ILE ILE A . n A 1 183 LYS 183 181 181 LYS LYS A . n A 1 184 ASN 184 182 182 ASN ASN A . n A 1 185 SER 185 183 183 SER SER A . n A 1 186 TRP 186 184 184 TRP TRP A . n A 1 187 GLY 187 185 185 GLY GLY A . n A 1 188 GLU 188 186 186 GLU GLU A . n A 1 189 ASN 189 187 187 ASN ASN A . n A 1 190 TRP 190 188 188 TRP TRP A . n A 1 191 GLY 191 189 189 GLY GLY A . n A 1 192 ASN 192 190 190 ASN ASN A . n A 1 193 LYS 193 191 191 LYS LYS A . n A 1 194 GLY 194 192 192 GLY GLY A . n A 1 195 TYR 195 193 193 TYR TYR A . n A 1 196 ILE 196 194 194 ILE ILE A . n A 1 197 LEU 197 195 195 LEU LEU A . n A 1 198 MET 198 196 196 MET MET A . n A 1 199 ALA 199 197 197 ALA ALA A . n A 1 200 ARG 200 198 198 ARG ARG A . n A 1 201 ASN 201 199 199 ASN ASN A . n A 1 202 LYS 202 200 200 LYS LYS A . n A 1 203 ASN 203 201 201 ASN ASN A . n A 1 204 ASN 204 202 202 ASN ASN A . n A 1 205 ALA 205 203 203 ALA ALA A . n A 1 206 CYS 206 204 204 CYS CYS A . n A 1 207 GLY 207 205 205 GLY GLY A . n A 1 208 ILE 208 206 206 ILE ILE A . n A 1 209 ALA 209 207 207 ALA ALA A . n A 1 210 ASN 210 208 208 ASN ASN A . n A 1 211 LEU 211 209 209 LEU LEU A . n A 1 212 ALA 212 210 210 ALA ALA A . n A 1 213 SER 213 211 211 SER SER A . n A 1 214 PHE 214 212 212 PHE PHE A . n A 1 215 PRO 215 213 213 PRO PRO A . n A 1 216 LYS 216 214 214 LYS LYS A . n A 1 217 MET 217 215 215 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CKE 1 300 300 CKE CKE A . C 3 HOH 1 301 216 HOH HOH A . C 3 HOH 2 302 217 HOH HOH A . C 3 HOH 3 303 218 HOH HOH A . C 3 HOH 4 304 220 HOH HOH A . C 3 HOH 5 305 221 HOH HOH A . C 3 HOH 6 306 222 HOH HOH A . C 3 HOH 7 307 223 HOH HOH A . C 3 HOH 8 308 224 HOH HOH A . C 3 HOH 9 309 225 HOH HOH A . C 3 HOH 10 310 226 HOH HOH A . C 3 HOH 11 311 227 HOH HOH A . C 3 HOH 12 312 228 HOH HOH A . C 3 HOH 13 313 231 HOH HOH A . C 3 HOH 14 314 232 HOH HOH A . C 3 HOH 15 315 233 HOH HOH A . C 3 HOH 16 316 234 HOH HOH A . C 3 HOH 17 317 235 HOH HOH A . C 3 HOH 18 318 236 HOH HOH A . C 3 HOH 19 319 237 HOH HOH A . C 3 HOH 20 320 238 HOH HOH A . C 3 HOH 21 321 239 HOH HOH A . C 3 HOH 22 322 240 HOH HOH A . C 3 HOH 23 323 241 HOH HOH A . C 3 HOH 24 324 242 HOH HOH A . C 3 HOH 25 325 243 HOH HOH A . C 3 HOH 26 326 244 HOH HOH A . C 3 HOH 27 327 246 HOH HOH A . C 3 HOH 28 328 247 HOH HOH A . C 3 HOH 29 329 248 HOH HOH A . C 3 HOH 30 330 249 HOH HOH A . C 3 HOH 31 331 250 HOH HOH A . C 3 HOH 32 332 251 HOH HOH A . C 3 HOH 33 333 252 HOH HOH A . C 3 HOH 34 334 253 HOH HOH A . C 3 HOH 35 335 254 HOH HOH A . C 3 HOH 36 336 255 HOH HOH A . C 3 HOH 37 337 256 HOH HOH A . C 3 HOH 38 338 257 HOH HOH A . C 3 HOH 39 339 258 HOH HOH A . C 3 HOH 40 340 259 HOH HOH A . C 3 HOH 41 341 260 HOH HOH A . C 3 HOH 42 342 261 HOH HOH A . C 3 HOH 43 343 263 HOH HOH A . C 3 HOH 44 344 264 HOH HOH A . C 3 HOH 45 345 265 HOH HOH A . C 3 HOH 46 346 266 HOH HOH A . C 3 HOH 47 347 267 HOH HOH A . C 3 HOH 48 348 268 HOH HOH A . C 3 HOH 49 349 269 HOH HOH A . C 3 HOH 50 350 270 HOH HOH A . C 3 HOH 51 351 271 HOH HOH A . C 3 HOH 52 352 272 HOH HOH A . C 3 HOH 53 353 273 HOH HOH A . C 3 HOH 54 354 274 HOH HOH A . C 3 HOH 55 355 275 HOH HOH A . C 3 HOH 56 356 277 HOH HOH A . C 3 HOH 57 357 278 HOH HOH A . C 3 HOH 58 358 279 HOH HOH A . C 3 HOH 59 359 280 HOH HOH A . C 3 HOH 60 360 281 HOH HOH A . C 3 HOH 61 361 282 HOH HOH A . C 3 HOH 62 362 283 HOH HOH A . C 3 HOH 63 363 284 HOH HOH A . C 3 HOH 64 364 285 HOH HOH A . C 3 HOH 65 365 286 HOH HOH A . C 3 HOH 66 366 287 HOH HOH A . C 3 HOH 67 367 288 HOH HOH A . C 3 HOH 68 368 289 HOH HOH A . C 3 HOH 69 369 290 HOH HOH A . C 3 HOH 70 370 291 HOH HOH A . C 3 HOH 71 371 292 HOH HOH A . C 3 HOH 72 372 293 HOH HOH A . C 3 HOH 73 373 294 HOH HOH A . C 3 HOH 74 374 295 HOH HOH A . C 3 HOH 75 375 296 HOH HOH A . C 3 HOH 76 376 297 HOH HOH A . C 3 HOH 77 377 298 HOH HOH A . C 3 HOH 78 378 299 HOH HOH A . C 3 HOH 79 379 300 HOH HOH A . C 3 HOH 80 380 301 HOH HOH A . C 3 HOH 81 381 302 HOH HOH A . C 3 HOH 82 382 303 HOH HOH A . C 3 HOH 83 383 304 HOH HOH A . C 3 HOH 84 384 305 HOH HOH A . C 3 HOH 85 385 306 HOH HOH A . C 3 HOH 86 386 307 HOH HOH A . C 3 HOH 87 387 308 HOH HOH A . C 3 HOH 88 388 309 HOH HOH A . C 3 HOH 89 389 310 HOH HOH A . C 3 HOH 90 390 311 HOH HOH A . C 3 HOH 91 391 312 HOH HOH A . C 3 HOH 92 392 313 HOH HOH A . C 3 HOH 93 393 314 HOH HOH A . C 3 HOH 94 394 315 HOH HOH A . C 3 HOH 95 395 316 HOH HOH A . C 3 HOH 96 396 317 HOH HOH A . C 3 HOH 97 397 318 HOH HOH A . C 3 HOH 98 398 319 HOH HOH A . C 3 HOH 99 399 320 HOH HOH A . C 3 HOH 100 400 321 HOH HOH A . C 3 HOH 101 401 322 HOH HOH A . C 3 HOH 102 402 323 HOH HOH A . C 3 HOH 103 403 324 HOH HOH A . C 3 HOH 104 404 325 HOH HOH A . C 3 HOH 105 405 326 HOH HOH A . C 3 HOH 106 406 327 HOH HOH A . C 3 HOH 107 407 328 HOH HOH A . C 3 HOH 108 408 329 HOH HOH A . C 3 HOH 109 409 330 HOH HOH A . C 3 HOH 110 410 331 HOH HOH A . C 3 HOH 111 411 333 HOH HOH A . C 3 HOH 112 412 334 HOH HOH A . C 3 HOH 113 413 335 HOH HOH A . C 3 HOH 114 414 336 HOH HOH A . C 3 HOH 115 415 338 HOH HOH A . C 3 HOH 116 416 339 HOH HOH A . C 3 HOH 117 417 340 HOH HOH A . C 3 HOH 118 418 341 HOH HOH A . C 3 HOH 119 419 342 HOH HOH A . C 3 HOH 120 420 343 HOH HOH A . C 3 HOH 121 421 344 HOH HOH A . C 3 HOH 122 422 345 HOH HOH A . C 3 HOH 123 423 346 HOH HOH A . C 3 HOH 124 424 347 HOH HOH A . C 3 HOH 125 425 348 HOH HOH A . C 3 HOH 126 426 349 HOH HOH A . C 3 HOH 127 427 350 HOH HOH A . C 3 HOH 128 428 351 HOH HOH A . C 3 HOH 129 429 352 HOH HOH A . C 3 HOH 130 430 353 HOH HOH A . C 3 HOH 131 431 354 HOH HOH A . C 3 HOH 132 432 357 HOH HOH A . C 3 HOH 133 433 358 HOH HOH A . C 3 HOH 134 434 359 HOH HOH A . C 3 HOH 135 435 360 HOH HOH A . C 3 HOH 136 436 362 HOH HOH A . C 3 HOH 137 437 363 HOH HOH A . C 3 HOH 138 438 365 HOH HOH A . C 3 HOH 139 439 366 HOH HOH A . C 3 HOH 140 440 367 HOH HOH A . C 3 HOH 141 441 368 HOH HOH A . C 3 HOH 142 442 369 HOH HOH A . C 3 HOH 143 443 370 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 3 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal AMoRE . ? program 'Jorge Navaza' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 2 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 4 XDS . ? ? ? ? 'data reduction' ? ? ? 5 AUTOMAR . ? ? ? ? 'data reduction' ? ? ? 6 # _pdbx_database_remark.id 600 _pdbx_database_remark.text ;heterogen The ligand CKE is covalently bonded to Cys25 of chain A through atom C09, and the bond between C09 and N10 is a single bond. The pro-ligand before convalently linking to protein has triple bond between C09 and N10, which is indicated as compound 5e in the primary citation of the structure. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 146 ? ? -131.45 -44.11 2 1 ASN A 159 A ? -107.02 72.98 3 1 ASN A 161 ? ? -140.58 10.53 4 1 LYS A 200 ? ? -115.04 57.33 5 1 LYS A 200 ? ? -115.04 57.36 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id -1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '1-{7-cyclohexyl-6-[4-(4-methylpiperazin-1-yl)benzyl]-7H-pyrrolo[2,3-d]pyrimidin-2-yl}methanamine' CKE 3 water HOH #