HEADER TRANSFERASE 07-SEP-07 2R7H TITLE CRYSTAL STRUCTURE OF A PUTATIVE ACETYLTRANSFERASE OF THE GNAT FAMILY TITLE 2 (DDE_3044) FROM DESULFOVIBRIO DESULFURICANS SUBSP. AT 1.85 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE D-ALANINE N-ACETYLTRANSFERASE OF GNAT FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO DESULFURICANS SUBSP. SOURCE 3 DESULFURICANS STR.; SOURCE 4 ORGANISM_TAXID: 207559; SOURCE 5 STRAIN: G20; SOURCE 6 GENE: YP_389533.1, DDE_3044; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE ACETYLTRANSFERASE OF THE GNAT FAMILY, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2R7H 1 REMARK SEQADV REVDAT 6 24-JUL-19 2R7H 1 REMARK LINK REVDAT 5 25-OCT-17 2R7H 1 REMARK REVDAT 4 13-JUL-11 2R7H 1 VERSN REVDAT 3 28-JUL-10 2R7H 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2R7H 1 VERSN REVDAT 1 25-SEP-07 2R7H 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE D-ALANINE N-ACETYLTRANSFERASE JRNL TITL 2 OF GNAT FAMILY (YP_389533.1) FROM DESULFOVIBRIO JRNL TITL 3 DESULFURICANS G20 AT 1.85 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 30712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1545 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2138 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2386 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.77000 REMARK 3 B22 (A**2) : 2.66000 REMARK 3 B33 (A**2) : -1.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.478 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2493 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1631 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3390 ; 1.964 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3933 ; 1.418 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 2.650 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;21.755 ;22.264 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 349 ; 9.434 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;10.065 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2859 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 570 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 452 ; 0.184 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1639 ; 0.155 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1208 ; 0.183 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1195 ; 0.086 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 195 ; 0.177 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.045 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 3 ; 0.126 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 16 ; 0.223 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.183 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1659 ; 2.257 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 649 ; 0.564 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2500 ; 3.202 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1011 ; 4.938 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 890 ; 6.126 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): 44.7140 48.0684 42.2759 REMARK 3 T TENSOR REMARK 3 T11: -0.0491 T22: 0.1049 REMARK 3 T33: 0.0406 T12: -0.1158 REMARK 3 T13: 0.0138 T23: -0.0805 REMARK 3 L TENSOR REMARK 3 L11: 4.6158 L22: 2.0318 REMARK 3 L33: 3.3960 L12: 1.4515 REMARK 3 L13: 0.6928 L23: -0.2302 REMARK 3 S TENSOR REMARK 3 S11: -0.0859 S12: -0.5481 S13: 0.6298 REMARK 3 S21: -0.1002 S22: -0.2256 S23: 0.0163 REMARK 3 S31: -0.2308 S32: 0.1624 S33: 0.3115 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5567 33.9742 37.9957 REMARK 3 T TENSOR REMARK 3 T11: -0.0006 T22: -0.0187 REMARK 3 T33: 0.0019 T12: 0.0071 REMARK 3 T13: 0.0183 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 1.0868 L22: 0.2970 REMARK 3 L33: 3.2667 L12: -0.1812 REMARK 3 L13: -0.3631 L23: 0.2237 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: -0.3140 S13: -0.0154 REMARK 3 S21: -0.0610 S22: -0.0346 S23: 0.0223 REMARK 3 S31: 0.1133 S32: 0.1753 S33: -0.0344 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 82 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4470 51.1248 12.1606 REMARK 3 T TENSOR REMARK 3 T11: -0.0315 T22: 0.0106 REMARK 3 T33: 0.0061 T12: 0.0815 REMARK 3 T13: 0.0005 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 5.2270 L22: 1.1975 REMARK 3 L33: 2.3654 L12: -1.8612 REMARK 3 L13: -0.8621 L23: -0.7834 REMARK 3 S TENSOR REMARK 3 S11: -0.1351 S12: 0.0212 S13: 0.5964 REMARK 3 S21: 0.0386 S22: 0.0455 S23: -0.1499 REMARK 3 S31: -0.1623 S32: -0.1057 S33: 0.0897 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 83 B 176 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3796 35.4444 15.6944 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.0141 REMARK 3 T33: -0.0282 T12: -0.0154 REMARK 3 T13: -0.0137 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 1.1125 L22: 0.6488 REMARK 3 L33: 2.6631 L12: -0.6659 REMARK 3 L13: 0.7560 L23: -1.0260 REMARK 3 S TENSOR REMARK 3 S11: 0.0839 S12: 0.1192 S13: -0.0779 REMARK 3 S21: -0.1363 S22: -0.0512 S23: 0.0052 REMARK 3 S31: 0.2154 S32: -0.2527 S33: -0.0327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. TWO 2-ETHOXYETHANOL MOLECULES ARE MODELED IN THE STRUCTURE. REMARK 4 REMARK 4 2R7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044520. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97951, 0.97926 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30713 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 28.116 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 35.0% 2-ETHOXYETHANOL, 0.1M REMARK 280 CACODYLATE PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.87500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.87500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.67500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION REMARK 300 ON BURIED SURFACE AREA. REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT REMARK 300 OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 GLN A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 LYS A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 465 PRO A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 GLY A 17 REMARK 465 GLY A 62 REMARK 465 ALA A 63 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 PRO B 2 REMARK 465 GLN B 3 REMARK 465 THR B 4 REMARK 465 LEU B 5 REMARK 465 LYS B 6 REMARK 465 PRO B 7 REMARK 465 ASP B 8 REMARK 465 THR B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 GLY B 12 REMARK 465 THR B 13 REMARK 465 PRO B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 GLY B 17 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 24 CD OE1 NE2 REMARK 470 GLN A 28 OE1 NE2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 ASP A 56 OD1 OD2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 MSE A 60 CG SE CE REMARK 470 ALA A 64 CB REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 ARG A 105 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN A 106 OE1 NE2 REMARK 470 HIS A 107 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 112 NE CZ NH1 NH2 REMARK 470 ARG A 123 CZ NH1 NH2 REMARK 470 ARG A 138 NE CZ NH1 NH2 REMARK 470 ARG A 145 CZ NH1 NH2 REMARK 470 ARG A 149 CD NE CZ NH1 NH2 REMARK 470 GLN B 28 CG CD OE1 NE2 REMARK 470 ARG B 35 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 GLU B 57 CD OE1 OE2 REMARK 470 MSE B 60 CG SE CE REMARK 470 ALA B 63 CB REMARK 470 ALA B 64 CB REMARK 470 ASP B 75 CG OD1 OD2 REMARK 470 ASP B 76 CB CG OD1 OD2 REMARK 470 ASP B 77 CG OD1 OD2 REMARK 470 ARG B 105 NE CZ NH1 NH2 REMARK 470 ARG B 112 NH1 NH2 REMARK 470 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 145 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 149 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 -127.57 61.32 REMARK 500 TRP A 98 149.27 -170.11 REMARK 500 HIS B 61 -61.37 -141.76 REMARK 500 ASP B 75 -137.83 64.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ETX A 177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ETX B 177 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 376338 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 2R7H A 1 176 UNP Q30WV8 Q30WV8_DESDG 1 176 DBREF 2R7H B 1 176 UNP Q30WV8 Q30WV8_DESDG 1 176 SEQADV 2R7H GLY A 0 UNP Q30WV8 EXPRESSION TAG SEQADV 2R7H GLY B 0 UNP Q30WV8 EXPRESSION TAG SEQRES 1 A 177 GLY MSE PRO GLN THR LEU LYS PRO ASP THR PRO ALA GLY SEQRES 2 A 177 THR PRO ALA ALA GLY ALA VAL ALA PHE ARG ARG GLN VAL SEQRES 3 A 177 LEU PRO GLN ASP ALA LEU LEU VAL ARG ARG VAL VAL GLU SEQRES 4 A 177 SER THR GLY PHE PHE THR PRO GLU GLU ALA ASP VAL ALA SEQRES 5 A 177 GLN GLU LEU VAL ASP GLU HIS LEU MSE HIS GLY ALA ALA SEQRES 6 A 177 CYS GLY TYR HIS PHE VAL PHE ALA THR GLU ASP ASP ASP SEQRES 7 A 177 MSE ALA GLY TYR ALA CYS TYR GLY PRO THR PRO ALA THR SEQRES 8 A 177 GLU GLY THR TYR ASP LEU TYR TRP ILE ALA VAL ALA PRO SEQRES 9 A 177 HIS ARG GLN HIS SER GLY LEU GLY ARG ALA LEU LEU ALA SEQRES 10 A 177 GLU VAL VAL HIS ASP VAL ARG LEU THR GLY GLY ARG LEU SEQRES 11 A 177 LEU PHE ALA GLU THR SER GLY ILE ARG LYS TYR ALA PRO SEQRES 12 A 177 THR ARG ARG PHE TYR GLU ARG ALA GLY PHE SER ALA GLU SEQRES 13 A 177 ALA VAL LEU LYS ALA PHE TYR ARG ALA GLY ASP ASP LYS SEQRES 14 A 177 ILE ILE TYR ARG LEU GLU VAL ALA SEQRES 1 B 177 GLY MSE PRO GLN THR LEU LYS PRO ASP THR PRO ALA GLY SEQRES 2 B 177 THR PRO ALA ALA GLY ALA VAL ALA PHE ARG ARG GLN VAL SEQRES 3 B 177 LEU PRO GLN ASP ALA LEU LEU VAL ARG ARG VAL VAL GLU SEQRES 4 B 177 SER THR GLY PHE PHE THR PRO GLU GLU ALA ASP VAL ALA SEQRES 5 B 177 GLN GLU LEU VAL ASP GLU HIS LEU MSE HIS GLY ALA ALA SEQRES 6 B 177 CYS GLY TYR HIS PHE VAL PHE ALA THR GLU ASP ASP ASP SEQRES 7 B 177 MSE ALA GLY TYR ALA CYS TYR GLY PRO THR PRO ALA THR SEQRES 8 B 177 GLU GLY THR TYR ASP LEU TYR TRP ILE ALA VAL ALA PRO SEQRES 9 B 177 HIS ARG GLN HIS SER GLY LEU GLY ARG ALA LEU LEU ALA SEQRES 10 B 177 GLU VAL VAL HIS ASP VAL ARG LEU THR GLY GLY ARG LEU SEQRES 11 B 177 LEU PHE ALA GLU THR SER GLY ILE ARG LYS TYR ALA PRO SEQRES 12 B 177 THR ARG ARG PHE TYR GLU ARG ALA GLY PHE SER ALA GLU SEQRES 13 B 177 ALA VAL LEU LYS ALA PHE TYR ARG ALA GLY ASP ASP LYS SEQRES 14 B 177 ILE ILE TYR ARG LEU GLU VAL ALA MODRES 2R7H MSE A 60 MET SELENOMETHIONINE MODRES 2R7H MSE A 78 MET SELENOMETHIONINE MODRES 2R7H MSE B 60 MET SELENOMETHIONINE MODRES 2R7H MSE B 78 MET SELENOMETHIONINE HET MSE A 60 5 HET MSE A 78 8 HET MSE B 60 5 HET MSE B 78 8 HET ETX A 177 6 HET ETX B 177 6 HETNAM MSE SELENOMETHIONINE HETNAM ETX 2-ETHOXYETHANOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 ETX 2(C4 H10 O2) FORMUL 5 HOH *128(H2 O) HELIX 1 1 GLN A 28 THR A 40 1 13 HELIX 2 2 THR A 44 MSE A 60 1 17 HELIX 3 3 GLY A 109 THR A 125 1 17 HELIX 4 4 ILE A 137 LYS A 139 5 3 HELIX 5 5 TYR A 140 ALA A 150 1 11 HELIX 6 6 GLN B 28 GLY B 41 1 14 HELIX 7 7 THR B 44 HIS B 61 1 18 HELIX 8 8 GLY B 62 GLY B 66 5 5 HELIX 9 9 PRO B 103 GLN B 106 5 4 HELIX 10 10 GLY B 109 THR B 125 1 17 HELIX 11 11 ILE B 137 LYS B 139 5 3 HELIX 12 12 TYR B 140 ALA B 150 1 11 SHEET 1 A 7 VAL A 19 ARG A 22 0 SHEET 2 A 7 HIS A 68 GLU A 74 -1 O PHE A 71 N ARG A 22 SHEET 3 A 7 ASP A 77 PRO A 86 -1 O TYR A 84 N HIS A 68 SHEET 4 A 7 THR A 93 VAL A 101 -1 O ASP A 95 N GLY A 85 SHEET 5 A 7 LEU A 129 SER A 135 1 O PHE A 131 N TYR A 94 SHEET 6 A 7 ASP A 166 GLU A 174 -1 O TYR A 171 N ALA A 132 SHEET 7 A 7 SER A 153 ARG A 163 -1 N SER A 153 O ARG A 172 SHEET 1 B 7 ALA B 20 ARG B 22 0 SHEET 2 B 7 HIS B 68 GLU B 74 -1 O THR B 73 N ALA B 20 SHEET 3 B 7 ASP B 77 PRO B 86 -1 O TYR B 84 N HIS B 68 SHEET 4 B 7 THR B 93 VAL B 101 -1 O ALA B 100 N TYR B 81 SHEET 5 B 7 LEU B 129 SER B 135 1 O PHE B 131 N LEU B 96 SHEET 6 B 7 ASP B 166 GLU B 174 -1 O TYR B 171 N ALA B 132 SHEET 7 B 7 SER B 153 ARG B 163 -1 N SER B 153 O ARG B 172 LINK C LEU A 59 N MSE A 60 1555 1555 1.33 LINK C MSE A 60 N HIS A 61 1555 1555 1.34 LINK C ASP A 77 N MSE A 78 1555 1555 1.33 LINK C MSE A 78 N ALA A 79 1555 1555 1.34 LINK C LEU B 59 N MSE B 60 1555 1555 1.35 LINK C MSE B 60 N HIS B 61 1555 1555 1.34 LINK C ASP B 77 N MSE B 78 1555 1555 1.33 LINK C MSE B 78 N ALA B 79 1555 1555 1.33 SITE 1 AC1 4 TYR A 140 TYR A 162 ASP A 166 HOH A 229 SITE 1 AC2 4 TYR B 67 TYR B 97 TRP B 98 HOH B 236 CRYST1 71.750 47.350 108.120 90.00 97.04 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013940 0.000000 0.001720 0.00000 SCALE2 0.000000 0.021120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009320 0.00000