data_2R7Y # _entry.id 2R7Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2R7Y pdb_00002r7y 10.2210/pdb2r7y/pdb NDB PH0043 ? ? RCSB RCSB044537 ? ? WWPDB D_1000044537 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-05-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_conn 3 3 'Structure model' struct_conn_type 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.conn_type_id' 4 3 'Structure model' '_struct_conn.id' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 3 'Structure model' '_struct_conn_type.id' 22 3 'Structure model' '_struct_ref_seq_dif.details' 23 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 24 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 25 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2R7Y _pdbx_database_status.recvd_initial_deposition_date 2007-09-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2G8U 'B. HALODURANS RNASE H CATALYTIC DOMAIN D132N MUTANT IN COMPLEX WITH MG2+ AND RNA/DNA HYBRID' unspecified PDB 1ZBI 'BACILLUS HALODURANS RNASE H CATALYTIC DOMAIN MUTANT D132N IN COMPLEX WITH 12-MER RNA/DNA HYBRID' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jiang, J.-S.' 1 'Gerlits, O.' 2 'Huang, Z.' 3 # _citation.id primary _citation.title 'Selenium Derivatized RNA/DNA Hybrid in complex with RNase H CATALYTIC DOMAIN MUTANT D132N' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jiang, J.-S.' 1 ? primary 'Gerlits, O.' 2 ? primary 'Huang, Z.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') ; 1875.189 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*DAP*DTP*(SDG)P*DTP*DCP*(SDG))-3') ; 1950.150 1 ? ? ? ? 3 polymer man 'Ribonuclease H' 15243.206 1 3.1.26.4 D132N ? ? 4 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 6 water nat water 18.015 178 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'RNase H' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no UCGACA UCGACA B ? 2 polydeoxyribonucleotide no yes '(DA)(DT)(SDG)(DT)(DC)(SDG)' ATGTCG C ? 3 'polypeptide(L)' no no ;EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIKWVK DKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADY ; ;EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIKWVK DKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADY ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'PHOSPHATE ION' PO4 5 'MAGNESIUM ION' MG 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 C n 1 3 G n 1 4 A n 1 5 C n 1 6 A n 2 1 DA n 2 2 DT n 2 3 SDG n 2 4 DT n 2 5 DC n 2 6 SDG n 3 1 GLU n 3 2 ILE n 3 3 ILE n 3 4 TRP n 3 5 GLU n 3 6 SER n 3 7 LEU n 3 8 SER n 3 9 VAL n 3 10 ASP n 3 11 VAL n 3 12 GLY n 3 13 SER n 3 14 GLN n 3 15 GLY n 3 16 ASN n 3 17 PRO n 3 18 GLY n 3 19 ILE n 3 20 VAL n 3 21 GLU n 3 22 TYR n 3 23 LYS n 3 24 GLY n 3 25 VAL n 3 26 ASP n 3 27 THR n 3 28 LYS n 3 29 THR n 3 30 GLY n 3 31 GLU n 3 32 VAL n 3 33 LEU n 3 34 PHE n 3 35 GLU n 3 36 ARG n 3 37 GLU n 3 38 PRO n 3 39 ILE n 3 40 PRO n 3 41 ILE n 3 42 GLY n 3 43 THR n 3 44 ASN n 3 45 ASN n 3 46 MET n 3 47 GLY n 3 48 GLU n 3 49 PHE n 3 50 LEU n 3 51 ALA n 3 52 ILE n 3 53 VAL n 3 54 HIS n 3 55 GLY n 3 56 LEU n 3 57 ARG n 3 58 TYR n 3 59 LEU n 3 60 LYS n 3 61 GLU n 3 62 ARG n 3 63 ASN n 3 64 SER n 3 65 ARG n 3 66 LYS n 3 67 PRO n 3 68 ILE n 3 69 TYR n 3 70 SER n 3 71 ASN n 3 72 SER n 3 73 GLN n 3 74 THR n 3 75 ALA n 3 76 ILE n 3 77 LYS n 3 78 TRP n 3 79 VAL n 3 80 LYS n 3 81 ASP n 3 82 LYS n 3 83 LYS n 3 84 ALA n 3 85 LYS n 3 86 SER n 3 87 THR n 3 88 LEU n 3 89 VAL n 3 90 ARG n 3 91 ASN n 3 92 GLU n 3 93 GLU n 3 94 THR n 3 95 ALA n 3 96 LEU n 3 97 ILE n 3 98 TRP n 3 99 LYS n 3 100 LEU n 3 101 VAL n 3 102 ASP n 3 103 GLU n 3 104 ALA n 3 105 GLU n 3 106 GLU n 3 107 TRP n 3 108 LEU n 3 109 ASN n 3 110 THR n 3 111 HIS n 3 112 THR n 3 113 TYR n 3 114 GLU n 3 115 THR n 3 116 PRO n 3 117 ILE n 3 118 LEU n 3 119 LYS n 3 120 TRP n 3 121 GLN n 3 122 THR n 3 123 ASP n 3 124 LYS n 3 125 TRP n 3 126 GLY n 3 127 GLU n 3 128 ILE n 3 129 LYS n 3 130 ALA n 3 131 ASP n 3 132 TYR n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene rnhA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus halodurans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 86665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 PLYSS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SDG 'DNA linking' n '2-amino-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purine-6-selenol' ? 'C10 H14 N5 O6 P Se' 410.182 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U B . n A 1 2 C 2 2 2 C C B . n A 1 3 G 3 3 3 G G B . n A 1 4 A 4 4 4 A A B . n A 1 5 C 5 5 5 C C B . n A 1 6 A 6 6 6 A A B . n B 2 1 DA 1 1 1 DA DA C . n B 2 2 DT 2 2 2 DT DT C . n B 2 3 SDG 3 3 3 SDG SDG C . n B 2 4 DT 4 4 4 DT DT C . n B 2 5 DC 5 5 5 DC DC C . n B 2 6 SDG 6 6 6 SDG SDG C . n C 3 1 GLU 1 62 62 GLU GLU A . n C 3 2 ILE 2 63 63 ILE ILE A . n C 3 3 ILE 3 64 64 ILE ILE A . n C 3 4 TRP 4 65 65 TRP TRP A . n C 3 5 GLU 5 66 66 GLU GLU A . n C 3 6 SER 6 67 67 SER SER A . n C 3 7 LEU 7 68 68 LEU LEU A . n C 3 8 SER 8 69 69 SER SER A . n C 3 9 VAL 9 70 70 VAL VAL A . n C 3 10 ASP 10 71 71 ASP ASP A . n C 3 11 VAL 11 72 72 VAL VAL A . n C 3 12 GLY 12 73 73 GLY GLY A . n C 3 13 SER 13 74 74 SER SER A . n C 3 14 GLN 14 75 75 GLN GLN A . n C 3 15 GLY 15 76 76 GLY GLY A . n C 3 16 ASN 16 77 77 ASN ASN A . n C 3 17 PRO 17 78 78 PRO PRO A . n C 3 18 GLY 18 79 79 GLY GLY A . n C 3 19 ILE 19 80 80 ILE ILE A . n C 3 20 VAL 20 81 81 VAL VAL A . n C 3 21 GLU 21 82 82 GLU GLU A . n C 3 22 TYR 22 83 83 TYR TYR A . n C 3 23 LYS 23 84 84 LYS LYS A . n C 3 24 GLY 24 85 85 GLY GLY A . n C 3 25 VAL 25 86 86 VAL VAL A . n C 3 26 ASP 26 87 87 ASP ASP A . n C 3 27 THR 27 88 88 THR THR A . n C 3 28 LYS 28 89 89 LYS LYS A . n C 3 29 THR 29 90 90 THR THR A . n C 3 30 GLY 30 91 91 GLY GLY A . n C 3 31 GLU 31 92 92 GLU GLU A . n C 3 32 VAL 32 93 93 VAL VAL A . n C 3 33 LEU 33 94 94 LEU LEU A . n C 3 34 PHE 34 95 95 PHE PHE A . n C 3 35 GLU 35 96 96 GLU GLU A . n C 3 36 ARG 36 97 97 ARG ARG A . n C 3 37 GLU 37 98 98 GLU GLU A . n C 3 38 PRO 38 99 99 PRO PRO A . n C 3 39 ILE 39 100 100 ILE ILE A . n C 3 40 PRO 40 101 101 PRO PRO A . n C 3 41 ILE 41 102 102 ILE ILE A . n C 3 42 GLY 42 103 103 GLY GLY A . n C 3 43 THR 43 104 104 THR THR A . n C 3 44 ASN 44 105 105 ASN ASN A . n C 3 45 ASN 45 106 106 ASN ASN A . n C 3 46 MET 46 107 107 MET MET A . n C 3 47 GLY 47 108 108 GLY GLY A . n C 3 48 GLU 48 109 109 GLU GLU A . n C 3 49 PHE 49 110 110 PHE PHE A . n C 3 50 LEU 50 111 111 LEU LEU A . n C 3 51 ALA 51 112 112 ALA ALA A . n C 3 52 ILE 52 113 113 ILE ILE A . n C 3 53 VAL 53 114 114 VAL VAL A . n C 3 54 HIS 54 115 115 HIS HIS A . n C 3 55 GLY 55 116 116 GLY GLY A . n C 3 56 LEU 56 117 117 LEU LEU A . n C 3 57 ARG 57 118 118 ARG ARG A . n C 3 58 TYR 58 119 119 TYR TYR A . n C 3 59 LEU 59 120 120 LEU LEU A . n C 3 60 LYS 60 121 121 LYS LYS A . n C 3 61 GLU 61 122 122 GLU GLU A . n C 3 62 ARG 62 123 123 ARG ARG A . n C 3 63 ASN 63 124 124 ASN ASN A . n C 3 64 SER 64 125 125 SER SER A . n C 3 65 ARG 65 126 126 ARG ARG A . n C 3 66 LYS 66 127 127 LYS LYS A . n C 3 67 PRO 67 128 128 PRO PRO A . n C 3 68 ILE 68 129 129 ILE ILE A . n C 3 69 TYR 69 130 130 TYR TYR A . n C 3 70 SER 70 131 131 SER SER A . n C 3 71 ASN 71 132 132 ASN ASN A . n C 3 72 SER 72 133 133 SER SER A . n C 3 73 GLN 73 134 134 GLN GLN A . n C 3 74 THR 74 135 135 THR THR A . n C 3 75 ALA 75 136 136 ALA ALA A . n C 3 76 ILE 76 137 137 ILE ILE A . n C 3 77 LYS 77 138 138 LYS LYS A . n C 3 78 TRP 78 139 139 TRP TRP A . n C 3 79 VAL 79 140 140 VAL VAL A . n C 3 80 LYS 80 141 141 LYS LYS A . n C 3 81 ASP 81 142 142 ASP ASP A . n C 3 82 LYS 82 143 143 LYS LYS A . n C 3 83 LYS 83 144 144 LYS LYS A . n C 3 84 ALA 84 145 145 ALA ALA A . n C 3 85 LYS 85 146 146 LYS LYS A . n C 3 86 SER 86 147 147 SER SER A . n C 3 87 THR 87 148 148 THR THR A . n C 3 88 LEU 88 149 149 LEU LEU A . n C 3 89 VAL 89 150 150 VAL VAL A . n C 3 90 ARG 90 151 151 ARG ARG A . n C 3 91 ASN 91 152 152 ASN ASN A . n C 3 92 GLU 92 153 153 GLU GLU A . n C 3 93 GLU 93 154 154 GLU GLU A . n C 3 94 THR 94 155 155 THR THR A . n C 3 95 ALA 95 156 156 ALA ALA A . n C 3 96 LEU 96 157 157 LEU LEU A . n C 3 97 ILE 97 158 158 ILE ILE A . n C 3 98 TRP 98 159 159 TRP TRP A . n C 3 99 LYS 99 160 160 LYS LYS A . n C 3 100 LEU 100 161 161 LEU LEU A . n C 3 101 VAL 101 162 162 VAL VAL A . n C 3 102 ASP 102 163 163 ASP ASP A . n C 3 103 GLU 103 164 164 GLU GLU A . n C 3 104 ALA 104 165 165 ALA ALA A . n C 3 105 GLU 105 166 166 GLU GLU A . n C 3 106 GLU 106 167 167 GLU GLU A . n C 3 107 TRP 107 168 168 TRP TRP A . n C 3 108 LEU 108 169 169 LEU LEU A . n C 3 109 ASN 109 170 170 ASN ASN A . n C 3 110 THR 110 171 171 THR THR A . n C 3 111 HIS 111 172 172 HIS HIS A . n C 3 112 THR 112 173 173 THR THR A . n C 3 113 TYR 113 174 174 TYR TYR A . n C 3 114 GLU 114 175 175 GLU GLU A . n C 3 115 THR 115 176 176 THR THR A . n C 3 116 PRO 116 177 177 PRO PRO A . n C 3 117 ILE 117 178 178 ILE ILE A . n C 3 118 LEU 118 179 179 LEU LEU A . n C 3 119 LYS 119 180 180 LYS LYS A . n C 3 120 TRP 120 181 181 TRP TRP A . n C 3 121 GLN 121 182 182 GLN GLN A . n C 3 122 THR 122 183 183 THR THR A . n C 3 123 ASP 123 184 184 ASP ASP A . n C 3 124 LYS 124 185 185 LYS LYS A . n C 3 125 TRP 125 186 186 TRP TRP A . n C 3 126 GLY 126 187 187 GLY GLY A . n C 3 127 GLU 127 188 188 GLU GLU A . n C 3 128 ILE 128 189 189 ILE ILE A . n C 3 129 LYS 129 190 190 LYS LYS A . n C 3 130 ALA 130 191 191 ALA ALA A . n C 3 131 ASP 131 192 192 ASP ASP A . n C 3 132 TYR 132 193 193 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PO4 1 7 7 PO4 PO4 C . E 5 MG 1 401 401 MG MG A . F 5 MG 1 402 402 MG MG A . G 6 HOH 1 12 12 HOH HOH B . G 6 HOH 2 23 23 HOH HOH B . G 6 HOH 3 26 26 HOH HOH B . G 6 HOH 4 43 43 HOH HOH B . G 6 HOH 5 44 44 HOH HOH B . G 6 HOH 6 49 49 HOH HOH B . G 6 HOH 7 59 59 HOH HOH B . G 6 HOH 8 80 80 HOH HOH B . G 6 HOH 9 81 81 HOH HOH B . G 6 HOH 10 88 88 HOH HOH B . G 6 HOH 11 89 89 HOH HOH B . G 6 HOH 12 93 93 HOH HOH B . G 6 HOH 13 95 95 HOH HOH B . G 6 HOH 14 108 108 HOH HOH B . G 6 HOH 15 113 113 HOH HOH B . G 6 HOH 16 142 142 HOH HOH B . G 6 HOH 17 160 160 HOH HOH B . G 6 HOH 18 172 172 HOH HOH B . H 6 HOH 1 45 45 HOH HOH C . H 6 HOH 2 48 48 HOH HOH C . H 6 HOH 3 50 50 HOH HOH C . H 6 HOH 4 51 51 HOH HOH C . H 6 HOH 5 74 74 HOH HOH C . H 6 HOH 6 84 84 HOH HOH C . H 6 HOH 7 85 85 HOH HOH C . H 6 HOH 8 101 101 HOH HOH C . H 6 HOH 9 107 107 HOH HOH C . H 6 HOH 10 121 121 HOH HOH C . H 6 HOH 11 127 127 HOH HOH C . H 6 HOH 12 134 134 HOH HOH C . H 6 HOH 13 141 141 HOH HOH C . H 6 HOH 14 144 144 HOH HOH C . H 6 HOH 15 148 148 HOH HOH C . H 6 HOH 16 161 161 HOH HOH C . H 6 HOH 17 163 163 HOH HOH C . H 6 HOH 18 173 173 HOH HOH C . H 6 HOH 19 178 178 HOH HOH C . I 6 HOH 1 403 403 HOH HOH A . I 6 HOH 2 404 404 HOH HOH A . I 6 HOH 3 405 405 HOH HOH A . I 6 HOH 4 406 406 HOH HOH A . I 6 HOH 5 407 407 HOH HOH A . I 6 HOH 6 408 408 HOH HOH A . I 6 HOH 7 409 409 HOH HOH A . I 6 HOH 8 410 410 HOH HOH A . I 6 HOH 9 411 411 HOH HOH A . I 6 HOH 10 412 412 HOH HOH A . I 6 HOH 11 413 413 HOH HOH A . I 6 HOH 12 414 414 HOH HOH A . I 6 HOH 13 415 415 HOH HOH A . I 6 HOH 14 416 416 HOH HOH A . I 6 HOH 15 417 417 HOH HOH A . I 6 HOH 16 418 418 HOH HOH A . I 6 HOH 17 419 419 HOH HOH A . I 6 HOH 18 420 420 HOH HOH A . I 6 HOH 19 421 421 HOH HOH A . I 6 HOH 20 422 422 HOH HOH A . I 6 HOH 21 423 423 HOH HOH A . I 6 HOH 22 424 424 HOH HOH A . I 6 HOH 23 425 425 HOH HOH A . I 6 HOH 24 426 426 HOH HOH A . I 6 HOH 25 427 427 HOH HOH A . I 6 HOH 26 428 428 HOH HOH A . I 6 HOH 27 429 429 HOH HOH A . I 6 HOH 28 430 430 HOH HOH A . I 6 HOH 29 431 431 HOH HOH A . I 6 HOH 30 432 432 HOH HOH A . I 6 HOH 31 433 433 HOH HOH A . I 6 HOH 32 434 434 HOH HOH A . I 6 HOH 33 435 435 HOH HOH A . I 6 HOH 34 436 436 HOH HOH A . I 6 HOH 35 437 437 HOH HOH A . I 6 HOH 36 438 438 HOH HOH A . I 6 HOH 37 439 439 HOH HOH A . I 6 HOH 38 440 440 HOH HOH A . I 6 HOH 39 441 441 HOH HOH A . I 6 HOH 40 442 442 HOH HOH A . I 6 HOH 41 443 443 HOH HOH A . I 6 HOH 42 444 444 HOH HOH A . I 6 HOH 43 445 445 HOH HOH A . I 6 HOH 44 446 446 HOH HOH A . I 6 HOH 45 447 447 HOH HOH A . I 6 HOH 46 448 448 HOH HOH A . I 6 HOH 47 449 449 HOH HOH A . I 6 HOH 48 450 450 HOH HOH A . I 6 HOH 49 451 451 HOH HOH A . I 6 HOH 50 452 452 HOH HOH A . I 6 HOH 51 453 453 HOH HOH A . I 6 HOH 52 454 454 HOH HOH A . I 6 HOH 53 455 455 HOH HOH A . I 6 HOH 54 456 456 HOH HOH A . I 6 HOH 55 457 457 HOH HOH A . I 6 HOH 56 458 458 HOH HOH A . I 6 HOH 57 459 459 HOH HOH A . I 6 HOH 58 460 460 HOH HOH A . I 6 HOH 59 461 461 HOH HOH A . I 6 HOH 60 462 462 HOH HOH A . I 6 HOH 61 463 463 HOH HOH A . I 6 HOH 62 464 464 HOH HOH A . I 6 HOH 63 465 465 HOH HOH A . I 6 HOH 64 466 466 HOH HOH A . I 6 HOH 65 467 467 HOH HOH A . I 6 HOH 66 468 468 HOH HOH A . I 6 HOH 67 469 469 HOH HOH A . I 6 HOH 68 470 470 HOH HOH A . I 6 HOH 69 471 471 HOH HOH A . I 6 HOH 70 472 472 HOH HOH A . I 6 HOH 71 473 473 HOH HOH A . I 6 HOH 72 474 474 HOH HOH A . I 6 HOH 73 475 475 HOH HOH A . I 6 HOH 74 476 476 HOH HOH A . I 6 HOH 75 477 477 HOH HOH A . I 6 HOH 76 478 478 HOH HOH A . I 6 HOH 77 479 479 HOH HOH A . I 6 HOH 78 480 480 HOH HOH A . I 6 HOH 79 481 481 HOH HOH A . I 6 HOH 80 482 482 HOH HOH A . I 6 HOH 81 483 483 HOH HOH A . I 6 HOH 82 484 484 HOH HOH A . I 6 HOH 83 485 485 HOH HOH A . I 6 HOH 84 486 486 HOH HOH A . I 6 HOH 85 487 487 HOH HOH A . I 6 HOH 86 488 488 HOH HOH A . I 6 HOH 87 489 489 HOH HOH A . I 6 HOH 88 490 490 HOH HOH A . I 6 HOH 89 491 491 HOH HOH A . I 6 HOH 90 492 492 HOH HOH A . I 6 HOH 91 493 493 HOH HOH A . I 6 HOH 92 494 494 HOH HOH A . I 6 HOH 93 495 495 HOH HOH A . I 6 HOH 94 496 496 HOH HOH A . I 6 HOH 95 497 497 HOH HOH A . I 6 HOH 96 498 498 HOH HOH A . I 6 HOH 97 499 499 HOH HOH A . I 6 HOH 98 500 500 HOH HOH A . I 6 HOH 99 501 501 HOH HOH A . I 6 HOH 100 502 502 HOH HOH A . I 6 HOH 101 503 503 HOH HOH A . I 6 HOH 102 504 504 HOH HOH A . I 6 HOH 103 505 505 HOH HOH A . I 6 HOH 104 506 506 HOH HOH A . I 6 HOH 105 507 507 HOH HOH A . I 6 HOH 106 508 508 HOH HOH A . I 6 HOH 107 509 509 HOH HOH A . I 6 HOH 108 510 510 HOH HOH A . I 6 HOH 109 511 511 HOH HOH A . I 6 HOH 110 512 512 HOH HOH A . I 6 HOH 111 513 513 HOH HOH A . I 6 HOH 112 514 514 HOH HOH A . I 6 HOH 113 515 515 HOH HOH A . I 6 HOH 114 516 516 HOH HOH A . I 6 HOH 115 517 517 HOH HOH A . I 6 HOH 116 518 518 HOH HOH A . I 6 HOH 117 519 519 HOH HOH A . I 6 HOH 118 520 520 HOH HOH A . I 6 HOH 119 521 521 HOH HOH A . I 6 HOH 120 522 522 HOH HOH A . I 6 HOH 121 523 523 HOH HOH A . I 6 HOH 122 524 524 HOH HOH A . I 6 HOH 123 525 525 HOH HOH A . I 6 HOH 124 526 526 HOH HOH A . I 6 HOH 125 527 527 HOH HOH A . I 6 HOH 126 528 528 HOH HOH A . I 6 HOH 127 529 529 HOH HOH A . I 6 HOH 128 530 530 HOH HOH A . I 6 HOH 129 531 531 HOH HOH A . I 6 HOH 130 532 532 HOH HOH A . I 6 HOH 131 533 533 HOH HOH A . I 6 HOH 132 534 534 HOH HOH A . I 6 HOH 133 535 535 HOH HOH A . I 6 HOH 134 536 536 HOH HOH A . I 6 HOH 135 537 537 HOH HOH A . I 6 HOH 136 538 538 HOH HOH A . I 6 HOH 137 539 539 HOH HOH A . I 6 HOH 138 540 540 HOH HOH A . I 6 HOH 139 541 541 HOH HOH A . I 6 HOH 140 542 542 HOH HOH A . I 6 HOH 141 543 543 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLU 154 ? CG ? C GLU 93 CG 2 1 Y 0 A GLU 154 ? CD ? C GLU 93 CD 3 1 Y 0 A GLU 154 ? OE1 ? C GLU 93 OE1 4 1 Y 0 A GLU 154 ? OE2 ? C GLU 93 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.2 ? 1 CBASS 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # _cell.entry_id 2R7Y _cell.length_a 80.660 _cell.length_b 37.819 _cell.length_c 61.937 _cell.angle_alpha 90.00 _cell.angle_beta 96.60 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2R7Y _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2R7Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_percent_sol 50.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.1 M MES, 12% PEG 20000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MES ? ? ? 1 2 1 'PEG 20000' ? ? ? 1 3 2 MES ? ? ? 1 4 2 'PEG 20000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2006-08-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9797 1.0 2 0.9800 1.0 3 0.9795 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9797,0.9800,0.9795 # _reflns.entry_id 2R7Y _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 1.80 _reflns.number_obs 17227 _reflns.number_all 17460 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.3 _reflns.B_iso_Wilson_estimate 19.0 _reflns.pdbx_redundancy 7.3 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 98.6 _reflns_shell.Rmerge_I_obs 0.278 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 10.5 _reflns_shell.pdbx_redundancy 6.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1707 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2R7Y _refine.ls_number_reflns_obs 16187 _refine.ls_number_reflns_all 17460 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 873417.70 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.45 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 92.8 _refine.ls_R_factor_obs 0.185 _refine.ls_R_factor_all 0.189 _refine.ls_R_factor_R_work 0.185 _refine.ls_R_factor_R_free 0.231 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.3 _refine.ls_number_reflns_R_free 1187 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 25.1 _refine.aniso_B[1][1] 3.24 _refine.aniso_B[2][2] 0.48 _refine.aniso_B[3][3] -3.72 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.96 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.4 _refine.solvent_model_param_bsol 58.1419 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2R7Y _refine_analyze.Luzzati_coordinate_error_obs 0.18 _refine_analyze.Luzzati_sigma_a_obs 0.06 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.24 _refine_analyze.Luzzati_sigma_a_free 0.05 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1077 _refine_hist.pdbx_number_atoms_nucleic_acid 245 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 178 _refine_hist.number_atoms_total 1506 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 23.45 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 20.2 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.19 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.34 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.96 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.14 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.10 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 2043 _refine_ls_shell.R_factor_R_work 0.2 _refine_ls_shell.percent_reflns_obs 76.1 _refine_ls_shell.R_factor_R_free 0.225 _refine_ls_shell.R_factor_R_free_error 0.018 _refine_ls_shell.percent_reflns_R_free 7.0 _refine_ls_shell.number_reflns_R_free 153 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 ion.param water.top 'X-RAY DIFFRACTION' 4 dna-rna_ums.par ion.top 'X-RAY DIFFRACTION' 5 ? ums.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2R7Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2R7Y _struct.title 'Selenium Derivatized RNA/DNA Hybrid in complex with RNase H CATALYTIC DOMAIN MUTANT D132N' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2R7Y _struct_keywords.pdbx_keywords Hydrolase/RNA/DNA _struct_keywords.text ;Selenium-DNA/RNA, RNASE H, RIBONUCLEASE H RNA-DNA Complex, Cytoplasm, Endonuclease, Hydrolase, Magnesium, Manganese, Metal-binding, Hydrolase-RNA-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RNH1_BACHD Q9KEI9 3 ;EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIKWVK DKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADY ; 62 ? 2 PDB 2R7Y 2R7Y 1 UCGACA 1 ? 3 PDB 2R7Y 2R7Y 2 ATGTCG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2R7Y A 1 ? 132 ? Q9KEI9 62 ? 193 ? 62 193 2 2 2R7Y B 1 ? 6 ? 2R7Y 1 ? 6 ? 1 6 3 3 2R7Y C 1 ? 6 ? 2R7Y 1 ? 6 ? 1 6 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2R7Y _struct_ref_seq_dif.mon_id ASN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 71 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9KEI9 _struct_ref_seq_dif.db_mon_id ASP _struct_ref_seq_dif.pdbx_seq_db_seq_num 132 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 132 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR C 43 ? ARG C 62 ? THR A 104 ARG A 123 1 ? 20 HELX_P HELX_P2 2 SER C 72 ? LYS C 82 ? SER A 133 LYS A 143 1 ? 11 HELX_P HELX_P3 3 THR C 94 ? ASN C 109 ? THR A 155 ASN A 170 1 ? 16 HELX_P HELX_P4 4 GLN C 121 ? GLY C 126 ? GLN A 182 GLY A 187 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DT 2 "O3'" ? ? ? 1_555 B SDG 3 P ? ? C DT 2 C SDG 3 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale2 covale both ? B SDG 3 "O3'" ? ? ? 1_555 B DT 4 P ? ? C SDG 3 C DT 4 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale3 covale both ? B DC 5 "O3'" ? ? ? 1_555 B SDG 6 P ? ? C DC 5 C SDG 6 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale4 covale one ? B SDG 6 "O3'" ? ? ? 1_555 D PO4 . P ? ? C SDG 6 C PO4 7 1_555 ? ? ? ? ? ? ? 1.609 ? ? metalc1 metalc ? ? A C 5 OP1 ? ? ? 1_555 F MG . MG ? ? B C 5 A MG 402 1_555 ? ? ? ? ? ? ? 2.241 ? ? metalc2 metalc ? ? C ASP 10 OD1 ? ? ? 1_555 E MG . MG ? ? A ASP 71 A MG 401 1_555 ? ? ? ? ? ? ? 2.196 ? ? metalc3 metalc ? ? C ASP 10 OD2 ? ? ? 1_555 F MG . MG ? ? A ASP 71 A MG 402 1_555 ? ? ? ? ? ? ? 2.316 ? ? metalc4 metalc ? ? C GLU 48 OE2 ? ? ? 1_555 E MG . MG ? ? A GLU 109 A MG 401 1_555 ? ? ? ? ? ? ? 2.156 ? ? metalc5 metalc ? ? C ASN 71 OD1 ? ? ? 1_555 E MG . MG ? ? A ASN 132 A MG 401 1_555 ? ? ? ? ? ? ? 2.356 ? ? metalc6 metalc ? ? C ASP 131 OD1 ? ? ? 1_555 F MG . MG ? ? A ASP 192 A MG 402 1_555 ? ? ? ? ? ? ? 2.287 ? ? metalc7 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 402 A HOH 403 1_555 ? ? ? ? ? ? ? 2.347 ? ? metalc8 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 402 A HOH 405 1_555 ? ? ? ? ? ? ? 2.418 ? ? hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 B DC 5 N3 ? ? B G 3 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 B DC 5 O2 ? ? B G 3 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 B DC 5 N4 ? ? B G 3 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 4 N1 ? ? ? 1_555 B DT 4 N3 ? ? B A 4 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 4 N6 ? ? ? 1_555 B DT 4 O4 ? ? B A 4 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 6 N1 ? ? ? 1_555 B DT 2 N3 ? ? B A 6 C DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 6 N6 ? ? ? 1_555 B DT 2 O4 ? ? B A 6 C DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A C 5 ? B C 5 ? 1_555 MG ? F MG . ? A MG 402 ? 1_555 OD2 ? C ASP 10 ? A ASP 71 ? 1_555 93.2 ? 2 OP1 ? A C 5 ? B C 5 ? 1_555 MG ? F MG . ? A MG 402 ? 1_555 OD1 ? C ASP 131 ? A ASP 192 ? 1_555 164.5 ? 3 OD2 ? C ASP 10 ? A ASP 71 ? 1_555 MG ? F MG . ? A MG 402 ? 1_555 OD1 ? C ASP 131 ? A ASP 192 ? 1_555 100.3 ? 4 OP1 ? A C 5 ? B C 5 ? 1_555 MG ? F MG . ? A MG 402 ? 1_555 O ? I HOH . ? A HOH 403 ? 1_555 99.9 ? 5 OD2 ? C ASP 10 ? A ASP 71 ? 1_555 MG ? F MG . ? A MG 402 ? 1_555 O ? I HOH . ? A HOH 403 ? 1_555 81.1 ? 6 OD1 ? C ASP 131 ? A ASP 192 ? 1_555 MG ? F MG . ? A MG 402 ? 1_555 O ? I HOH . ? A HOH 403 ? 1_555 89.7 ? 7 OP1 ? A C 5 ? B C 5 ? 1_555 MG ? F MG . ? A MG 402 ? 1_555 O ? I HOH . ? A HOH 405 ? 1_555 89.4 ? 8 OD2 ? C ASP 10 ? A ASP 71 ? 1_555 MG ? F MG . ? A MG 402 ? 1_555 O ? I HOH . ? A HOH 405 ? 1_555 166.1 ? 9 OD1 ? C ASP 131 ? A ASP 192 ? 1_555 MG ? F MG . ? A MG 402 ? 1_555 O ? I HOH . ? A HOH 405 ? 1_555 79.3 ? 10 O ? I HOH . ? A HOH 403 ? 1_555 MG ? F MG . ? A MG 402 ? 1_555 O ? I HOH . ? A HOH 405 ? 1_555 85.0 ? 11 OD1 ? C ASP 10 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 OE2 ? C GLU 48 ? A GLU 109 ? 1_555 123.2 ? 12 OD1 ? C ASP 10 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 OD1 ? C ASN 71 ? A ASN 132 ? 1_555 127.6 ? 13 OE2 ? C GLU 48 ? A GLU 109 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 OD1 ? C ASN 71 ? A ASN 132 ? 1_555 97.2 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 16 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 77 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 17 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 78 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.03 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 32 ? GLY C 42 ? VAL A 93 GLY A 103 A 2 GLY C 18 ? ASP C 26 ? GLY A 79 ASP A 87 A 3 LEU C 7 ? GLN C 14 ? LEU A 68 GLN A 75 A 4 ILE C 68 ? SER C 70 ? ILE A 129 SER A 131 A 5 ILE C 117 ? LYS C 119 ? ILE A 178 LYS A 180 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE C 39 ? O ILE A 100 N VAL C 20 ? N VAL A 81 A 2 3 O VAL C 25 ? O VAL A 86 N SER C 8 ? N SER A 69 A 3 4 N LEU C 7 ? N LEU A 68 O TYR C 69 ? O TYR A 130 A 4 5 N ILE C 68 ? N ILE A 129 O LEU C 118 ? O LEU A 179 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C PO4 7 ? 6 'BINDING SITE FOR RESIDUE PO4 C 7' AC2 Software A MG 401 ? 4 'BINDING SITE FOR RESIDUE MG A 401' AC3 Software A MG 402 ? 5 'BINDING SITE FOR RESIDUE MG A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 TRP C 78 ? TRP A 139 . ? 1_555 ? 2 AC1 6 LYS C 85 ? LYS A 146 . ? 1_555 ? 3 AC1 6 DA B 1 ? DA C 1 . ? 4_556 ? 4 AC1 6 HOH H . ? HOH C 50 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH C 134 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH C 148 . ? 1_555 ? 7 AC2 4 ASP C 10 ? ASP A 71 . ? 1_555 ? 8 AC2 4 GLU C 48 ? GLU A 109 . ? 1_555 ? 9 AC2 4 ASN C 71 ? ASN A 132 . ? 1_555 ? 10 AC2 4 HOH I . ? HOH A 412 . ? 1_555 ? 11 AC3 5 ASP C 10 ? ASP A 71 . ? 1_555 ? 12 AC3 5 ASP C 131 ? ASP A 192 . ? 1_555 ? 13 AC3 5 HOH I . ? HOH A 403 . ? 1_555 ? 14 AC3 5 HOH I . ? HOH A 404 . ? 1_555 ? 15 AC3 5 HOH I . ? HOH A 405 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C4 C DT 2 ? ? C5 C DT 2 ? ? 1.505 1.445 0.060 0.009 N 2 1 C5 C DT 2 ? ? C6 C DT 2 ? ? 1.383 1.339 0.044 0.007 N 3 1 C4 C DT 4 ? ? C5 C DT 4 ? ? 1.513 1.445 0.068 0.009 N 4 1 C5 C DT 4 ? ? C6 C DT 4 ? ? 1.387 1.339 0.048 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 101.65 108.20 -6.55 0.80 N 2 1 "O4'" C DT 2 ? ? "C1'" C DT 2 ? ? N1 C DT 2 ? ? 99.15 108.00 -8.85 0.70 N 3 1 "O4'" C DT 4 ? ? "C1'" C DT 4 ? ? N1 C DT 4 ? ? 100.55 108.00 -7.45 0.70 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B SDG 3 C SDG 3 ? DG ? 2 B SDG 6 C SDG 6 ? DG ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 DA OP3 O N N 146 DA P P N N 147 DA OP1 O N N 148 DA OP2 O N N 149 DA "O5'" O N N 150 DA "C5'" C N N 151 DA "C4'" C N R 152 DA "O4'" O N N 153 DA "C3'" C N S 154 DA "O3'" O N N 155 DA "C2'" C N N 156 DA "C1'" C N R 157 DA N9 N Y N 158 DA C8 C Y N 159 DA N7 N Y N 160 DA C5 C Y N 161 DA C6 C Y N 162 DA N6 N N N 163 DA N1 N Y N 164 DA C2 C Y N 165 DA N3 N Y N 166 DA C4 C Y N 167 DA HOP3 H N N 168 DA HOP2 H N N 169 DA "H5'" H N N 170 DA "H5''" H N N 171 DA "H4'" H N N 172 DA "H3'" H N N 173 DA "HO3'" H N N 174 DA "H2'" H N N 175 DA "H2''" H N N 176 DA "H1'" H N N 177 DA H8 H N N 178 DA H61 H N N 179 DA H62 H N N 180 DA H2 H N N 181 DC OP3 O N N 182 DC P P N N 183 DC OP1 O N N 184 DC OP2 O N N 185 DC "O5'" O N N 186 DC "C5'" C N N 187 DC "C4'" C N R 188 DC "O4'" O N N 189 DC "C3'" C N S 190 DC "O3'" O N N 191 DC "C2'" C N N 192 DC "C1'" C N R 193 DC N1 N N N 194 DC C2 C N N 195 DC O2 O N N 196 DC N3 N N N 197 DC C4 C N N 198 DC N4 N N N 199 DC C5 C N N 200 DC C6 C N N 201 DC HOP3 H N N 202 DC HOP2 H N N 203 DC "H5'" H N N 204 DC "H5''" H N N 205 DC "H4'" H N N 206 DC "H3'" H N N 207 DC "HO3'" H N N 208 DC "H2'" H N N 209 DC "H2''" H N N 210 DC "H1'" H N N 211 DC H41 H N N 212 DC H42 H N N 213 DC H5 H N N 214 DC H6 H N N 215 DT OP3 O N N 216 DT P P N N 217 DT OP1 O N N 218 DT OP2 O N N 219 DT "O5'" O N N 220 DT "C5'" C N N 221 DT "C4'" C N R 222 DT "O4'" O N N 223 DT "C3'" C N S 224 DT "O3'" O N N 225 DT "C2'" C N N 226 DT "C1'" C N R 227 DT N1 N N N 228 DT C2 C N N 229 DT O2 O N N 230 DT N3 N N N 231 DT C4 C N N 232 DT O4 O N N 233 DT C5 C N N 234 DT C7 C N N 235 DT C6 C N N 236 DT HOP3 H N N 237 DT HOP2 H N N 238 DT "H5'" H N N 239 DT "H5''" H N N 240 DT "H4'" H N N 241 DT "H3'" H N N 242 DT "HO3'" H N N 243 DT "H2'" H N N 244 DT "H2''" H N N 245 DT "H1'" H N N 246 DT H3 H N N 247 DT H71 H N N 248 DT H72 H N N 249 DT H73 H N N 250 DT H6 H N N 251 G OP3 O N N 252 G P P N N 253 G OP1 O N N 254 G OP2 O N N 255 G "O5'" O N N 256 G "C5'" C N N 257 G "C4'" C N R 258 G "O4'" O N N 259 G "C3'" C N S 260 G "O3'" O N N 261 G "C2'" C N R 262 G "O2'" O N N 263 G "C1'" C N R 264 G N9 N Y N 265 G C8 C Y N 266 G N7 N Y N 267 G C5 C Y N 268 G C6 C N N 269 G O6 O N N 270 G N1 N N N 271 G C2 C N N 272 G N2 N N N 273 G N3 N N N 274 G C4 C Y N 275 G HOP3 H N N 276 G HOP2 H N N 277 G "H5'" H N N 278 G "H5''" H N N 279 G "H4'" H N N 280 G "H3'" H N N 281 G "HO3'" H N N 282 G "H2'" H N N 283 G "HO2'" H N N 284 G "H1'" H N N 285 G H8 H N N 286 G H1 H N N 287 G H21 H N N 288 G H22 H N N 289 GLN N N N N 290 GLN CA C N S 291 GLN C C N N 292 GLN O O N N 293 GLN CB C N N 294 GLN CG C N N 295 GLN CD C N N 296 GLN OE1 O N N 297 GLN NE2 N N N 298 GLN OXT O N N 299 GLN H H N N 300 GLN H2 H N N 301 GLN HA H N N 302 GLN HB2 H N N 303 GLN HB3 H N N 304 GLN HG2 H N N 305 GLN HG3 H N N 306 GLN HE21 H N N 307 GLN HE22 H N N 308 GLN HXT H N N 309 GLU N N N N 310 GLU CA C N S 311 GLU C C N N 312 GLU O O N N 313 GLU CB C N N 314 GLU CG C N N 315 GLU CD C N N 316 GLU OE1 O N N 317 GLU OE2 O N N 318 GLU OXT O N N 319 GLU H H N N 320 GLU H2 H N N 321 GLU HA H N N 322 GLU HB2 H N N 323 GLU HB3 H N N 324 GLU HG2 H N N 325 GLU HG3 H N N 326 GLU HE2 H N N 327 GLU HXT H N N 328 GLY N N N N 329 GLY CA C N N 330 GLY C C N N 331 GLY O O N N 332 GLY OXT O N N 333 GLY H H N N 334 GLY H2 H N N 335 GLY HA2 H N N 336 GLY HA3 H N N 337 GLY HXT H N N 338 HIS N N N N 339 HIS CA C N S 340 HIS C C N N 341 HIS O O N N 342 HIS CB C N N 343 HIS CG C Y N 344 HIS ND1 N Y N 345 HIS CD2 C Y N 346 HIS CE1 C Y N 347 HIS NE2 N Y N 348 HIS OXT O N N 349 HIS H H N N 350 HIS H2 H N N 351 HIS HA H N N 352 HIS HB2 H N N 353 HIS HB3 H N N 354 HIS HD1 H N N 355 HIS HD2 H N N 356 HIS HE1 H N N 357 HIS HE2 H N N 358 HIS HXT H N N 359 HOH O O N N 360 HOH H1 H N N 361 HOH H2 H N N 362 ILE N N N N 363 ILE CA C N S 364 ILE C C N N 365 ILE O O N N 366 ILE CB C N S 367 ILE CG1 C N N 368 ILE CG2 C N N 369 ILE CD1 C N N 370 ILE OXT O N N 371 ILE H H N N 372 ILE H2 H N N 373 ILE HA H N N 374 ILE HB H N N 375 ILE HG12 H N N 376 ILE HG13 H N N 377 ILE HG21 H N N 378 ILE HG22 H N N 379 ILE HG23 H N N 380 ILE HD11 H N N 381 ILE HD12 H N N 382 ILE HD13 H N N 383 ILE HXT H N N 384 LEU N N N N 385 LEU CA C N S 386 LEU C C N N 387 LEU O O N N 388 LEU CB C N N 389 LEU CG C N N 390 LEU CD1 C N N 391 LEU CD2 C N N 392 LEU OXT O N N 393 LEU H H N N 394 LEU H2 H N N 395 LEU HA H N N 396 LEU HB2 H N N 397 LEU HB3 H N N 398 LEU HG H N N 399 LEU HD11 H N N 400 LEU HD12 H N N 401 LEU HD13 H N N 402 LEU HD21 H N N 403 LEU HD22 H N N 404 LEU HD23 H N N 405 LEU HXT H N N 406 LYS N N N N 407 LYS CA C N S 408 LYS C C N N 409 LYS O O N N 410 LYS CB C N N 411 LYS CG C N N 412 LYS CD C N N 413 LYS CE C N N 414 LYS NZ N N N 415 LYS OXT O N N 416 LYS H H N N 417 LYS H2 H N N 418 LYS HA H N N 419 LYS HB2 H N N 420 LYS HB3 H N N 421 LYS HG2 H N N 422 LYS HG3 H N N 423 LYS HD2 H N N 424 LYS HD3 H N N 425 LYS HE2 H N N 426 LYS HE3 H N N 427 LYS HZ1 H N N 428 LYS HZ2 H N N 429 LYS HZ3 H N N 430 LYS HXT H N N 431 MET N N N N 432 MET CA C N S 433 MET C C N N 434 MET O O N N 435 MET CB C N N 436 MET CG C N N 437 MET SD S N N 438 MET CE C N N 439 MET OXT O N N 440 MET H H N N 441 MET H2 H N N 442 MET HA H N N 443 MET HB2 H N N 444 MET HB3 H N N 445 MET HG2 H N N 446 MET HG3 H N N 447 MET HE1 H N N 448 MET HE2 H N N 449 MET HE3 H N N 450 MET HXT H N N 451 MG MG MG N N 452 PHE N N N N 453 PHE CA C N S 454 PHE C C N N 455 PHE O O N N 456 PHE CB C N N 457 PHE CG C Y N 458 PHE CD1 C Y N 459 PHE CD2 C Y N 460 PHE CE1 C Y N 461 PHE CE2 C Y N 462 PHE CZ C Y N 463 PHE OXT O N N 464 PHE H H N N 465 PHE H2 H N N 466 PHE HA H N N 467 PHE HB2 H N N 468 PHE HB3 H N N 469 PHE HD1 H N N 470 PHE HD2 H N N 471 PHE HE1 H N N 472 PHE HE2 H N N 473 PHE HZ H N N 474 PHE HXT H N N 475 PO4 P P N N 476 PO4 O1 O N N 477 PO4 O2 O N N 478 PO4 O3 O N N 479 PO4 O4 O N N 480 PRO N N N N 481 PRO CA C N S 482 PRO C C N N 483 PRO O O N N 484 PRO CB C N N 485 PRO CG C N N 486 PRO CD C N N 487 PRO OXT O N N 488 PRO H H N N 489 PRO HA H N N 490 PRO HB2 H N N 491 PRO HB3 H N N 492 PRO HG2 H N N 493 PRO HG3 H N N 494 PRO HD2 H N N 495 PRO HD3 H N N 496 PRO HXT H N N 497 SDG O3P O N N 498 SDG C2 C Y N 499 SDG P P N N 500 SDG O1P O N N 501 SDG O2P O N N 502 SDG "O5'" O N N 503 SDG N9 N Y N 504 SDG C4 C Y N 505 SDG N3 N Y N 506 SDG N2 N N N 507 SDG N1 N Y N 508 SDG C6 C Y N 509 SDG SE SE N N 510 SDG C5 C Y N 511 SDG N7 N Y N 512 SDG C8 C Y N 513 SDG "C2'" C N N 514 SDG "C5'" C N N 515 SDG "C4'" C N R 516 SDG "O4'" O N N 517 SDG "C1'" C N R 518 SDG "C3'" C N S 519 SDG "O3'" O N N 520 SDG HO3P H N N 521 SDG HO2P H N N 522 SDG HN2 H N N 523 SDG HN2A H N N 524 SDG H8 H N N 525 SDG "H2'" H N N 526 SDG "H2'A" H N N 527 SDG "H5'" H N N 528 SDG "H5'A" H N N 529 SDG "H4'" H N N 530 SDG "H1'" H N N 531 SDG "H3'" H N N 532 SDG "HO3'" H N N 533 SDG HSE H N N 534 SER N N N N 535 SER CA C N S 536 SER C C N N 537 SER O O N N 538 SER CB C N N 539 SER OG O N N 540 SER OXT O N N 541 SER H H N N 542 SER H2 H N N 543 SER HA H N N 544 SER HB2 H N N 545 SER HB3 H N N 546 SER HG H N N 547 SER HXT H N N 548 THR N N N N 549 THR CA C N S 550 THR C C N N 551 THR O O N N 552 THR CB C N R 553 THR OG1 O N N 554 THR CG2 C N N 555 THR OXT O N N 556 THR H H N N 557 THR H2 H N N 558 THR HA H N N 559 THR HB H N N 560 THR HG1 H N N 561 THR HG21 H N N 562 THR HG22 H N N 563 THR HG23 H N N 564 THR HXT H N N 565 TRP N N N N 566 TRP CA C N S 567 TRP C C N N 568 TRP O O N N 569 TRP CB C N N 570 TRP CG C Y N 571 TRP CD1 C Y N 572 TRP CD2 C Y N 573 TRP NE1 N Y N 574 TRP CE2 C Y N 575 TRP CE3 C Y N 576 TRP CZ2 C Y N 577 TRP CZ3 C Y N 578 TRP CH2 C Y N 579 TRP OXT O N N 580 TRP H H N N 581 TRP H2 H N N 582 TRP HA H N N 583 TRP HB2 H N N 584 TRP HB3 H N N 585 TRP HD1 H N N 586 TRP HE1 H N N 587 TRP HE3 H N N 588 TRP HZ2 H N N 589 TRP HZ3 H N N 590 TRP HH2 H N N 591 TRP HXT H N N 592 TYR N N N N 593 TYR CA C N S 594 TYR C C N N 595 TYR O O N N 596 TYR CB C N N 597 TYR CG C Y N 598 TYR CD1 C Y N 599 TYR CD2 C Y N 600 TYR CE1 C Y N 601 TYR CE2 C Y N 602 TYR CZ C Y N 603 TYR OH O N N 604 TYR OXT O N N 605 TYR H H N N 606 TYR H2 H N N 607 TYR HA H N N 608 TYR HB2 H N N 609 TYR HB3 H N N 610 TYR HD1 H N N 611 TYR HD2 H N N 612 TYR HE1 H N N 613 TYR HE2 H N N 614 TYR HH H N N 615 TYR HXT H N N 616 U OP3 O N N 617 U P P N N 618 U OP1 O N N 619 U OP2 O N N 620 U "O5'" O N N 621 U "C5'" C N N 622 U "C4'" C N R 623 U "O4'" O N N 624 U "C3'" C N S 625 U "O3'" O N N 626 U "C2'" C N R 627 U "O2'" O N N 628 U "C1'" C N R 629 U N1 N N N 630 U C2 C N N 631 U O2 O N N 632 U N3 N N N 633 U C4 C N N 634 U O4 O N N 635 U C5 C N N 636 U C6 C N N 637 U HOP3 H N N 638 U HOP2 H N N 639 U "H5'" H N N 640 U "H5''" H N N 641 U "H4'" H N N 642 U "H3'" H N N 643 U "HO3'" H N N 644 U "H2'" H N N 645 U "HO2'" H N N 646 U "H1'" H N N 647 U H3 H N N 648 U H5 H N N 649 U H6 H N N 650 VAL N N N N 651 VAL CA C N S 652 VAL C C N N 653 VAL O O N N 654 VAL CB C N N 655 VAL CG1 C N N 656 VAL CG2 C N N 657 VAL OXT O N N 658 VAL H H N N 659 VAL H2 H N N 660 VAL HA H N N 661 VAL HB H N N 662 VAL HG11 H N N 663 VAL HG12 H N N 664 VAL HG13 H N N 665 VAL HG21 H N N 666 VAL HG22 H N N 667 VAL HG23 H N N 668 VAL HXT H N N 669 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 DA OP3 P sing N N 145 DA OP3 HOP3 sing N N 146 DA P OP1 doub N N 147 DA P OP2 sing N N 148 DA P "O5'" sing N N 149 DA OP2 HOP2 sing N N 150 DA "O5'" "C5'" sing N N 151 DA "C5'" "C4'" sing N N 152 DA "C5'" "H5'" sing N N 153 DA "C5'" "H5''" sing N N 154 DA "C4'" "O4'" sing N N 155 DA "C4'" "C3'" sing N N 156 DA "C4'" "H4'" sing N N 157 DA "O4'" "C1'" sing N N 158 DA "C3'" "O3'" sing N N 159 DA "C3'" "C2'" sing N N 160 DA "C3'" "H3'" sing N N 161 DA "O3'" "HO3'" sing N N 162 DA "C2'" "C1'" sing N N 163 DA "C2'" "H2'" sing N N 164 DA "C2'" "H2''" sing N N 165 DA "C1'" N9 sing N N 166 DA "C1'" "H1'" sing N N 167 DA N9 C8 sing Y N 168 DA N9 C4 sing Y N 169 DA C8 N7 doub Y N 170 DA C8 H8 sing N N 171 DA N7 C5 sing Y N 172 DA C5 C6 sing Y N 173 DA C5 C4 doub Y N 174 DA C6 N6 sing N N 175 DA C6 N1 doub Y N 176 DA N6 H61 sing N N 177 DA N6 H62 sing N N 178 DA N1 C2 sing Y N 179 DA C2 N3 doub Y N 180 DA C2 H2 sing N N 181 DA N3 C4 sing Y N 182 DC OP3 P sing N N 183 DC OP3 HOP3 sing N N 184 DC P OP1 doub N N 185 DC P OP2 sing N N 186 DC P "O5'" sing N N 187 DC OP2 HOP2 sing N N 188 DC "O5'" "C5'" sing N N 189 DC "C5'" "C4'" sing N N 190 DC "C5'" "H5'" sing N N 191 DC "C5'" "H5''" sing N N 192 DC "C4'" "O4'" sing N N 193 DC "C4'" "C3'" sing N N 194 DC "C4'" "H4'" sing N N 195 DC "O4'" "C1'" sing N N 196 DC "C3'" "O3'" sing N N 197 DC "C3'" "C2'" sing N N 198 DC "C3'" "H3'" sing N N 199 DC "O3'" "HO3'" sing N N 200 DC "C2'" "C1'" sing N N 201 DC "C2'" "H2'" sing N N 202 DC "C2'" "H2''" sing N N 203 DC "C1'" N1 sing N N 204 DC "C1'" "H1'" sing N N 205 DC N1 C2 sing N N 206 DC N1 C6 sing N N 207 DC C2 O2 doub N N 208 DC C2 N3 sing N N 209 DC N3 C4 doub N N 210 DC C4 N4 sing N N 211 DC C4 C5 sing N N 212 DC N4 H41 sing N N 213 DC N4 H42 sing N N 214 DC C5 C6 doub N N 215 DC C5 H5 sing N N 216 DC C6 H6 sing N N 217 DT OP3 P sing N N 218 DT OP3 HOP3 sing N N 219 DT P OP1 doub N N 220 DT P OP2 sing N N 221 DT P "O5'" sing N N 222 DT OP2 HOP2 sing N N 223 DT "O5'" "C5'" sing N N 224 DT "C5'" "C4'" sing N N 225 DT "C5'" "H5'" sing N N 226 DT "C5'" "H5''" sing N N 227 DT "C4'" "O4'" sing N N 228 DT "C4'" "C3'" sing N N 229 DT "C4'" "H4'" sing N N 230 DT "O4'" "C1'" sing N N 231 DT "C3'" "O3'" sing N N 232 DT "C3'" "C2'" sing N N 233 DT "C3'" "H3'" sing N N 234 DT "O3'" "HO3'" sing N N 235 DT "C2'" "C1'" sing N N 236 DT "C2'" "H2'" sing N N 237 DT "C2'" "H2''" sing N N 238 DT "C1'" N1 sing N N 239 DT "C1'" "H1'" sing N N 240 DT N1 C2 sing N N 241 DT N1 C6 sing N N 242 DT C2 O2 doub N N 243 DT C2 N3 sing N N 244 DT N3 C4 sing N N 245 DT N3 H3 sing N N 246 DT C4 O4 doub N N 247 DT C4 C5 sing N N 248 DT C5 C7 sing N N 249 DT C5 C6 doub N N 250 DT C7 H71 sing N N 251 DT C7 H72 sing N N 252 DT C7 H73 sing N N 253 DT C6 H6 sing N N 254 G OP3 P sing N N 255 G OP3 HOP3 sing N N 256 G P OP1 doub N N 257 G P OP2 sing N N 258 G P "O5'" sing N N 259 G OP2 HOP2 sing N N 260 G "O5'" "C5'" sing N N 261 G "C5'" "C4'" sing N N 262 G "C5'" "H5'" sing N N 263 G "C5'" "H5''" sing N N 264 G "C4'" "O4'" sing N N 265 G "C4'" "C3'" sing N N 266 G "C4'" "H4'" sing N N 267 G "O4'" "C1'" sing N N 268 G "C3'" "O3'" sing N N 269 G "C3'" "C2'" sing N N 270 G "C3'" "H3'" sing N N 271 G "O3'" "HO3'" sing N N 272 G "C2'" "O2'" sing N N 273 G "C2'" "C1'" sing N N 274 G "C2'" "H2'" sing N N 275 G "O2'" "HO2'" sing N N 276 G "C1'" N9 sing N N 277 G "C1'" "H1'" sing N N 278 G N9 C8 sing Y N 279 G N9 C4 sing Y N 280 G C8 N7 doub Y N 281 G C8 H8 sing N N 282 G N7 C5 sing Y N 283 G C5 C6 sing N N 284 G C5 C4 doub Y N 285 G C6 O6 doub N N 286 G C6 N1 sing N N 287 G N1 C2 sing N N 288 G N1 H1 sing N N 289 G C2 N2 sing N N 290 G C2 N3 doub N N 291 G N2 H21 sing N N 292 G N2 H22 sing N N 293 G N3 C4 sing N N 294 GLN N CA sing N N 295 GLN N H sing N N 296 GLN N H2 sing N N 297 GLN CA C sing N N 298 GLN CA CB sing N N 299 GLN CA HA sing N N 300 GLN C O doub N N 301 GLN C OXT sing N N 302 GLN CB CG sing N N 303 GLN CB HB2 sing N N 304 GLN CB HB3 sing N N 305 GLN CG CD sing N N 306 GLN CG HG2 sing N N 307 GLN CG HG3 sing N N 308 GLN CD OE1 doub N N 309 GLN CD NE2 sing N N 310 GLN NE2 HE21 sing N N 311 GLN NE2 HE22 sing N N 312 GLN OXT HXT sing N N 313 GLU N CA sing N N 314 GLU N H sing N N 315 GLU N H2 sing N N 316 GLU CA C sing N N 317 GLU CA CB sing N N 318 GLU CA HA sing N N 319 GLU C O doub N N 320 GLU C OXT sing N N 321 GLU CB CG sing N N 322 GLU CB HB2 sing N N 323 GLU CB HB3 sing N N 324 GLU CG CD sing N N 325 GLU CG HG2 sing N N 326 GLU CG HG3 sing N N 327 GLU CD OE1 doub N N 328 GLU CD OE2 sing N N 329 GLU OE2 HE2 sing N N 330 GLU OXT HXT sing N N 331 GLY N CA sing N N 332 GLY N H sing N N 333 GLY N H2 sing N N 334 GLY CA C sing N N 335 GLY CA HA2 sing N N 336 GLY CA HA3 sing N N 337 GLY C O doub N N 338 GLY C OXT sing N N 339 GLY OXT HXT sing N N 340 HIS N CA sing N N 341 HIS N H sing N N 342 HIS N H2 sing N N 343 HIS CA C sing N N 344 HIS CA CB sing N N 345 HIS CA HA sing N N 346 HIS C O doub N N 347 HIS C OXT sing N N 348 HIS CB CG sing N N 349 HIS CB HB2 sing N N 350 HIS CB HB3 sing N N 351 HIS CG ND1 sing Y N 352 HIS CG CD2 doub Y N 353 HIS ND1 CE1 doub Y N 354 HIS ND1 HD1 sing N N 355 HIS CD2 NE2 sing Y N 356 HIS CD2 HD2 sing N N 357 HIS CE1 NE2 sing Y N 358 HIS CE1 HE1 sing N N 359 HIS NE2 HE2 sing N N 360 HIS OXT HXT sing N N 361 HOH O H1 sing N N 362 HOH O H2 sing N N 363 ILE N CA sing N N 364 ILE N H sing N N 365 ILE N H2 sing N N 366 ILE CA C sing N N 367 ILE CA CB sing N N 368 ILE CA HA sing N N 369 ILE C O doub N N 370 ILE C OXT sing N N 371 ILE CB CG1 sing N N 372 ILE CB CG2 sing N N 373 ILE CB HB sing N N 374 ILE CG1 CD1 sing N N 375 ILE CG1 HG12 sing N N 376 ILE CG1 HG13 sing N N 377 ILE CG2 HG21 sing N N 378 ILE CG2 HG22 sing N N 379 ILE CG2 HG23 sing N N 380 ILE CD1 HD11 sing N N 381 ILE CD1 HD12 sing N N 382 ILE CD1 HD13 sing N N 383 ILE OXT HXT sing N N 384 LEU N CA sing N N 385 LEU N H sing N N 386 LEU N H2 sing N N 387 LEU CA C sing N N 388 LEU CA CB sing N N 389 LEU CA HA sing N N 390 LEU C O doub N N 391 LEU C OXT sing N N 392 LEU CB CG sing N N 393 LEU CB HB2 sing N N 394 LEU CB HB3 sing N N 395 LEU CG CD1 sing N N 396 LEU CG CD2 sing N N 397 LEU CG HG sing N N 398 LEU CD1 HD11 sing N N 399 LEU CD1 HD12 sing N N 400 LEU CD1 HD13 sing N N 401 LEU CD2 HD21 sing N N 402 LEU CD2 HD22 sing N N 403 LEU CD2 HD23 sing N N 404 LEU OXT HXT sing N N 405 LYS N CA sing N N 406 LYS N H sing N N 407 LYS N H2 sing N N 408 LYS CA C sing N N 409 LYS CA CB sing N N 410 LYS CA HA sing N N 411 LYS C O doub N N 412 LYS C OXT sing N N 413 LYS CB CG sing N N 414 LYS CB HB2 sing N N 415 LYS CB HB3 sing N N 416 LYS CG CD sing N N 417 LYS CG HG2 sing N N 418 LYS CG HG3 sing N N 419 LYS CD CE sing N N 420 LYS CD HD2 sing N N 421 LYS CD HD3 sing N N 422 LYS CE NZ sing N N 423 LYS CE HE2 sing N N 424 LYS CE HE3 sing N N 425 LYS NZ HZ1 sing N N 426 LYS NZ HZ2 sing N N 427 LYS NZ HZ3 sing N N 428 LYS OXT HXT sing N N 429 MET N CA sing N N 430 MET N H sing N N 431 MET N H2 sing N N 432 MET CA C sing N N 433 MET CA CB sing N N 434 MET CA HA sing N N 435 MET C O doub N N 436 MET C OXT sing N N 437 MET CB CG sing N N 438 MET CB HB2 sing N N 439 MET CB HB3 sing N N 440 MET CG SD sing N N 441 MET CG HG2 sing N N 442 MET CG HG3 sing N N 443 MET SD CE sing N N 444 MET CE HE1 sing N N 445 MET CE HE2 sing N N 446 MET CE HE3 sing N N 447 MET OXT HXT sing N N 448 PHE N CA sing N N 449 PHE N H sing N N 450 PHE N H2 sing N N 451 PHE CA C sing N N 452 PHE CA CB sing N N 453 PHE CA HA sing N N 454 PHE C O doub N N 455 PHE C OXT sing N N 456 PHE CB CG sing N N 457 PHE CB HB2 sing N N 458 PHE CB HB3 sing N N 459 PHE CG CD1 doub Y N 460 PHE CG CD2 sing Y N 461 PHE CD1 CE1 sing Y N 462 PHE CD1 HD1 sing N N 463 PHE CD2 CE2 doub Y N 464 PHE CD2 HD2 sing N N 465 PHE CE1 CZ doub Y N 466 PHE CE1 HE1 sing N N 467 PHE CE2 CZ sing Y N 468 PHE CE2 HE2 sing N N 469 PHE CZ HZ sing N N 470 PHE OXT HXT sing N N 471 PO4 P O1 doub N N 472 PO4 P O2 sing N N 473 PO4 P O3 sing N N 474 PO4 P O4 sing N N 475 PRO N CA sing N N 476 PRO N CD sing N N 477 PRO N H sing N N 478 PRO CA C sing N N 479 PRO CA CB sing N N 480 PRO CA HA sing N N 481 PRO C O doub N N 482 PRO C OXT sing N N 483 PRO CB CG sing N N 484 PRO CB HB2 sing N N 485 PRO CB HB3 sing N N 486 PRO CG CD sing N N 487 PRO CG HG2 sing N N 488 PRO CG HG3 sing N N 489 PRO CD HD2 sing N N 490 PRO CD HD3 sing N N 491 PRO OXT HXT sing N N 492 SDG P O3P sing N N 493 SDG O3P HO3P sing N N 494 SDG N3 C2 doub Y N 495 SDG N2 C2 sing N N 496 SDG C2 N1 sing Y N 497 SDG O1P P doub N N 498 SDG P "O5'" sing N N 499 SDG P O2P sing N N 500 SDG O2P HO2P sing N N 501 SDG "O5'" "C5'" sing N N 502 SDG "C1'" N9 sing N N 503 SDG N9 C4 sing Y N 504 SDG N9 C8 sing Y N 505 SDG N3 C4 sing Y N 506 SDG C4 C5 doub Y N 507 SDG N2 HN2 sing N N 508 SDG N2 HN2A sing N N 509 SDG N1 C6 doub Y N 510 SDG C5 C6 sing Y N 511 SDG C6 SE sing N N 512 SDG C5 N7 sing Y N 513 SDG C8 N7 doub Y N 514 SDG C8 H8 sing N N 515 SDG "C3'" "C2'" sing N N 516 SDG "C2'" "C1'" sing N N 517 SDG "C2'" "H2'" sing N N 518 SDG "C2'" "H2'A" sing N N 519 SDG "C5'" "C4'" sing N N 520 SDG "C5'" "H5'" sing N N 521 SDG "C5'" "H5'A" sing N N 522 SDG "C4'" "C3'" sing N N 523 SDG "C4'" "O4'" sing N N 524 SDG "C4'" "H4'" sing N N 525 SDG "O4'" "C1'" sing N N 526 SDG "C1'" "H1'" sing N N 527 SDG "O3'" "C3'" sing N N 528 SDG "C3'" "H3'" sing N N 529 SDG "O3'" "HO3'" sing N N 530 SDG SE HSE sing N N 531 SER N CA sing N N 532 SER N H sing N N 533 SER N H2 sing N N 534 SER CA C sing N N 535 SER CA CB sing N N 536 SER CA HA sing N N 537 SER C O doub N N 538 SER C OXT sing N N 539 SER CB OG sing N N 540 SER CB HB2 sing N N 541 SER CB HB3 sing N N 542 SER OG HG sing N N 543 SER OXT HXT sing N N 544 THR N CA sing N N 545 THR N H sing N N 546 THR N H2 sing N N 547 THR CA C sing N N 548 THR CA CB sing N N 549 THR CA HA sing N N 550 THR C O doub N N 551 THR C OXT sing N N 552 THR CB OG1 sing N N 553 THR CB CG2 sing N N 554 THR CB HB sing N N 555 THR OG1 HG1 sing N N 556 THR CG2 HG21 sing N N 557 THR CG2 HG22 sing N N 558 THR CG2 HG23 sing N N 559 THR OXT HXT sing N N 560 TRP N CA sing N N 561 TRP N H sing N N 562 TRP N H2 sing N N 563 TRP CA C sing N N 564 TRP CA CB sing N N 565 TRP CA HA sing N N 566 TRP C O doub N N 567 TRP C OXT sing N N 568 TRP CB CG sing N N 569 TRP CB HB2 sing N N 570 TRP CB HB3 sing N N 571 TRP CG CD1 doub Y N 572 TRP CG CD2 sing Y N 573 TRP CD1 NE1 sing Y N 574 TRP CD1 HD1 sing N N 575 TRP CD2 CE2 doub Y N 576 TRP CD2 CE3 sing Y N 577 TRP NE1 CE2 sing Y N 578 TRP NE1 HE1 sing N N 579 TRP CE2 CZ2 sing Y N 580 TRP CE3 CZ3 doub Y N 581 TRP CE3 HE3 sing N N 582 TRP CZ2 CH2 doub Y N 583 TRP CZ2 HZ2 sing N N 584 TRP CZ3 CH2 sing Y N 585 TRP CZ3 HZ3 sing N N 586 TRP CH2 HH2 sing N N 587 TRP OXT HXT sing N N 588 TYR N CA sing N N 589 TYR N H sing N N 590 TYR N H2 sing N N 591 TYR CA C sing N N 592 TYR CA CB sing N N 593 TYR CA HA sing N N 594 TYR C O doub N N 595 TYR C OXT sing N N 596 TYR CB CG sing N N 597 TYR CB HB2 sing N N 598 TYR CB HB3 sing N N 599 TYR CG CD1 doub Y N 600 TYR CG CD2 sing Y N 601 TYR CD1 CE1 sing Y N 602 TYR CD1 HD1 sing N N 603 TYR CD2 CE2 doub Y N 604 TYR CD2 HD2 sing N N 605 TYR CE1 CZ doub Y N 606 TYR CE1 HE1 sing N N 607 TYR CE2 CZ sing Y N 608 TYR CE2 HE2 sing N N 609 TYR CZ OH sing N N 610 TYR OH HH sing N N 611 TYR OXT HXT sing N N 612 U OP3 P sing N N 613 U OP3 HOP3 sing N N 614 U P OP1 doub N N 615 U P OP2 sing N N 616 U P "O5'" sing N N 617 U OP2 HOP2 sing N N 618 U "O5'" "C5'" sing N N 619 U "C5'" "C4'" sing N N 620 U "C5'" "H5'" sing N N 621 U "C5'" "H5''" sing N N 622 U "C4'" "O4'" sing N N 623 U "C4'" "C3'" sing N N 624 U "C4'" "H4'" sing N N 625 U "O4'" "C1'" sing N N 626 U "C3'" "O3'" sing N N 627 U "C3'" "C2'" sing N N 628 U "C3'" "H3'" sing N N 629 U "O3'" "HO3'" sing N N 630 U "C2'" "O2'" sing N N 631 U "C2'" "C1'" sing N N 632 U "C2'" "H2'" sing N N 633 U "O2'" "HO2'" sing N N 634 U "C1'" N1 sing N N 635 U "C1'" "H1'" sing N N 636 U N1 C2 sing N N 637 U N1 C6 sing N N 638 U C2 O2 doub N N 639 U C2 N3 sing N N 640 U N3 C4 sing N N 641 U N3 H3 sing N N 642 U C4 O4 doub N N 643 U C4 C5 sing N N 644 U C5 C6 doub N N 645 U C5 H5 sing N N 646 U C6 H6 sing N N 647 VAL N CA sing N N 648 VAL N H sing N N 649 VAL N H2 sing N N 650 VAL CA C sing N N 651 VAL CA CB sing N N 652 VAL CA HA sing N N 653 VAL C O doub N N 654 VAL C OXT sing N N 655 VAL CB CG1 sing N N 656 VAL CB CG2 sing N N 657 VAL CB HB sing N N 658 VAL CG1 HG11 sing N N 659 VAL CG1 HG12 sing N N 660 VAL CG1 HG13 sing N N 661 VAL CG2 HG21 sing N N 662 VAL CG2 HG22 sing N N 663 VAL CG2 HG23 sing N N 664 VAL OXT HXT sing N N 665 # _ndb_struct_conf_na.entry_id 2R7Y _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 B DC 5 1_555 -0.091 -0.126 -0.099 -9.511 -9.922 0.896 1 B_G3:DC5_C B 3 ? C 5 ? 19 1 1 A A 4 1_555 B DT 4 1_555 0.182 -0.064 0.016 -16.094 -7.394 -0.416 2 B_A4:DT4_C B 4 ? C 4 ? 20 1 1 A A 6 1_555 B DT 2 1_555 -0.112 -0.040 -0.083 -10.877 -11.049 1.572 3 B_A6:DT2_C B 6 ? C 2 ? 20 1 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 A _ndb_struct_na_base_pair_step.i_label_comp_id_1 G _ndb_struct_na_base_pair_step.i_label_seq_id_1 3 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 B _ndb_struct_na_base_pair_step.j_label_comp_id_1 DC _ndb_struct_na_base_pair_step.j_label_seq_id_1 5 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 A _ndb_struct_na_base_pair_step.i_label_comp_id_2 A _ndb_struct_na_base_pair_step.i_label_seq_id_2 4 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 B _ndb_struct_na_base_pair_step.j_label_comp_id_2 DT _ndb_struct_na_base_pair_step.j_label_seq_id_2 4 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift 0.821 _ndb_struct_na_base_pair_step.slide -2.038 _ndb_struct_na_base_pair_step.rise 3.415 _ndb_struct_na_base_pair_step.tilt 5.222 _ndb_struct_na_base_pair_step.roll 4.240 _ndb_struct_na_base_pair_step.twist 28.089 _ndb_struct_na_base_pair_step.x_displacement -5.053 _ndb_struct_na_base_pair_step.y_displacement -0.459 _ndb_struct_na_base_pair_step.helical_rise 3.177 _ndb_struct_na_base_pair_step.inclination 8.581 _ndb_struct_na_base_pair_step.tip -10.567 _ndb_struct_na_base_pair_step.helical_twist 28.867 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name BB_G3A4:DT4DC5_CC _ndb_struct_na_base_pair_step.i_auth_asym_id_1 B _ndb_struct_na_base_pair_step.i_auth_seq_id_1 3 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 C _ndb_struct_na_base_pair_step.j_auth_seq_id_1 5 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 B _ndb_struct_na_base_pair_step.i_auth_seq_id_2 4 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 C _ndb_struct_na_base_pair_step.j_auth_seq_id_2 4 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # _atom_sites.entry_id 2R7Y _atom_sites.fract_transf_matrix[1][1] 0.012398 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001434 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026442 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016253 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S SE # loop_