HEADER TRANSPORT PROTEIN 10-SEP-07 2R89 TITLE CRYSTAL STRUCTURE OF THE LONG-CHAIN FATTY ACID TRANSPORTER FADL MUTANT TITLE 2 DELTA N3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LONG-CHAIN FATTY ACID TRANSPORT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OUTER MEMBRANE FADL PROTEIN, OUTER MEMBRANE FLP PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FADL, TTR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD22 KEYWDS BETA BARREL, OUTER MEMBRANE PROTEIN, LIPID TRANSPORT, PHAGE KEYWDS 2 RECOGNITION, TRANSMEMBRANE, TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.M.HEARN,D.R.PATEL,B.W.LEPORE,M.INDIC,B.VAN DEN BERG REVDAT 5 30-AUG-23 2R89 1 SEQADV REVDAT 4 06-JUL-11 2R89 1 JRNL REVDAT 3 01-JUN-11 2R89 1 JRNL REVDAT 2 24-FEB-09 2R89 1 VERSN REVDAT 1 23-SEP-08 2R89 0 JRNL AUTH B.W.LEPORE,M.INDIC,H.PHAM,E.M.HEARN,D.R.PATEL,B.VAN DEN BERG JRNL TITL FROM THE COVER: LIGAND-GATED DIFFUSION ACROSS THE BACTERIAL JRNL TITL 2 OUTER MEMBRANE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 10121 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21593406 JRNL DOI 10.1073/PNAS.1018532108 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.VAN DEN BERG,P.N.BLACK,W.M.CLEMONS JR.,T.A.RAPOPORT REMARK 1 TITL CRYSTAL STRUCTURE OF THE LONG-CHAIN FATTY ACID TRANSPORTER REMARK 1 TITL 2 FADL REMARK 1 REF SCIENCE V. 304 1506 2004 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 16346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1813 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 152 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.73500 REMARK 3 B22 (A**2) : 14.57600 REMARK 3 B33 (A**2) : -28.31100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.46 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.40 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.550 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2R89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17064 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 38.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35300 REMARK 200 R SYM FOR SHELL (I) : 0.35300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1T16 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 10000, 8% ETHYLENE GLYCOL, REMARK 280 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.59500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 144.59500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.00750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.95600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.00750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.95600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 144.59500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.00750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.95600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 144.59500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.00750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.95600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 4 REMARK 465 LYS A 236 REMARK 465 GLY A 237 REMARK 465 ASN A 238 REMARK 465 TYR A 239 REMARK 465 SER A 240 REMARK 465 SER A 241 REMARK 465 ASP A 242 REMARK 465 LEU A 243 REMARK 465 ASN A 244 REMARK 465 ARG A 245 REMARK 465 ALA A 246 REMARK 465 PHE A 247 REMARK 465 ASN A 248 REMARK 465 ASN A 249 REMARK 465 TYR A 250 REMARK 465 GLY A 251 REMARK 465 LEU A 252 REMARK 465 PRO A 253 REMARK 465 ILE A 254 REMARK 465 PRO A 255 REMARK 465 THR A 256 REMARK 465 ALA A 257 REMARK 465 THR A 258 REMARK 465 GLY A 259 REMARK 465 GLY A 260 REMARK 465 ALA A 261 REMARK 465 THR A 262 REMARK 465 GLN A 263 REMARK 465 SER A 264 REMARK 465 GLY A 265 REMARK 465 TYR A 266 REMARK 465 GLN A 300 REMARK 465 PHE A 301 REMARK 465 GLN A 302 REMARK 465 GLN A 303 REMARK 465 LEU A 304 REMARK 465 LYS A 305 REMARK 465 ALA A 306 REMARK 465 THR A 307 REMARK 465 SER A 308 REMARK 465 THR A 309 REMARK 465 SER A 310 REMARK 465 GLY A 311 REMARK 465 ASP A 312 REMARK 465 THR A 313 REMARK 465 LEU A 314 REMARK 465 PHE A 315 REMARK 465 GLN A 316 REMARK 465 LYS A 317 REMARK 465 HIS A 318 REMARK 465 GLU A 319 REMARK 465 GLY A 320 REMARK 465 PHE A 321 REMARK 465 LYS A 322 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 ALA B 4 REMARK 465 LYS B 236 REMARK 465 GLY B 237 REMARK 465 ASN B 238 REMARK 465 TYR B 239 REMARK 465 SER B 240 REMARK 465 SER B 241 REMARK 465 ASP B 242 REMARK 465 LEU B 243 REMARK 465 ASN B 244 REMARK 465 ARG B 245 REMARK 465 ALA B 246 REMARK 465 PHE B 247 REMARK 465 ASN B 248 REMARK 465 ASN B 249 REMARK 465 TYR B 250 REMARK 465 GLY B 251 REMARK 465 LEU B 252 REMARK 465 PRO B 253 REMARK 465 ILE B 254 REMARK 465 PRO B 255 REMARK 465 THR B 256 REMARK 465 ALA B 257 REMARK 465 THR B 258 REMARK 465 GLY B 259 REMARK 465 GLY B 260 REMARK 465 ALA B 261 REMARK 465 THR B 262 REMARK 465 GLN B 263 REMARK 465 SER B 264 REMARK 465 GLY B 265 REMARK 465 TYR B 266 REMARK 465 GLN B 300 REMARK 465 PHE B 301 REMARK 465 GLN B 302 REMARK 465 GLN B 303 REMARK 465 LEU B 304 REMARK 465 LYS B 305 REMARK 465 ALA B 306 REMARK 465 THR B 307 REMARK 465 SER B 308 REMARK 465 THR B 309 REMARK 465 SER B 310 REMARK 465 GLY B 311 REMARK 465 ASP B 312 REMARK 465 THR B 313 REMARK 465 LEU B 314 REMARK 465 PHE B 315 REMARK 465 GLN B 316 REMARK 465 LYS B 317 REMARK 465 HIS B 318 REMARK 465 GLU B 319 REMARK 465 GLY B 320 REMARK 465 PHE B 321 REMARK 465 LYS B 322 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 465 HIS B 427 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 299 OG REMARK 470 SER B 299 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 378 N ASP B 380 2.06 REMARK 500 O ASN A 378 N ASP A 380 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 272 C - N - CA ANGL. DEV. = 12.0 DEGREES REMARK 500 PRO B 272 C - N - CA ANGL. DEV. = 12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 7 29.94 29.32 REMARK 500 GLU A 20 134.91 -29.07 REMARK 500 ALA A 22 16.65 -151.08 REMARK 500 ALA A 27 -18.09 -41.58 REMARK 500 ASP A 55 65.25 -159.76 REMARK 500 ALA A 70 75.24 -151.31 REMARK 500 ASN A 89 -94.07 -155.90 REMARK 500 ASP A 90 -7.74 -141.71 REMARK 500 THR A 111 58.81 -98.77 REMARK 500 VAL A 117 52.70 -140.22 REMARK 500 ASN A 137 147.58 167.93 REMARK 500 ALA A 167 -78.54 -63.00 REMARK 500 GLN A 172 -27.15 -161.84 REMARK 500 THR A 178 132.15 -37.06 REMARK 500 ALA A 186 -145.44 -83.70 REMARK 500 THR A 187 -22.37 58.92 REMARK 500 SER A 193 59.79 -64.67 REMARK 500 ASN A 194 2.57 178.24 REMARK 500 ALA A 198 113.17 177.27 REMARK 500 TRP A 209 -163.78 -105.40 REMARK 500 ASN A 210 136.71 175.67 REMARK 500 ILE A 213 55.44 -149.32 REMARK 500 ASP A 218 -174.71 168.08 REMARK 500 SER A 229 -159.72 -70.32 REMARK 500 TRP A 298 70.20 -68.06 REMARK 500 ASP A 348 95.53 178.50 REMARK 500 ALA A 354 -72.06 6.98 REMARK 500 ARG A 357 175.08 -55.09 REMARK 500 PRO A 362 77.36 -60.76 REMARK 500 ASP A 365 123.99 -31.01 REMARK 500 LYS A 379 -9.38 34.59 REMARK 500 GLN A 393 157.04 -48.04 REMARK 500 LYS A 409 -167.92 -114.37 REMARK 500 ALA A 410 149.60 -173.20 REMARK 500 ASN B 6 114.31 67.65 REMARK 500 GLU B 20 134.98 -28.88 REMARK 500 ALA B 22 16.52 -150.64 REMARK 500 ALA B 27 -18.28 -41.52 REMARK 500 ASP B 55 65.26 -160.05 REMARK 500 ALA B 70 75.39 -151.60 REMARK 500 ASN B 89 -94.13 -155.82 REMARK 500 ASP B 90 -7.85 -141.62 REMARK 500 THR B 111 58.93 -98.72 REMARK 500 VAL B 117 52.52 -140.11 REMARK 500 ASN B 137 147.96 167.89 REMARK 500 ALA B 167 -78.79 -62.95 REMARK 500 GLN B 172 -27.07 -162.08 REMARK 500 THR B 178 132.25 -36.98 REMARK 500 ALA B 186 -145.44 -83.69 REMARK 500 THR B 187 -22.28 58.95 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T16 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BACTERIAL FATTY ACID TRANSPORTER FADL REMARK 900 (WILD-TYPE, MONOCLINIC SPACE GROUP P21) REMARK 900 RELATED ID: 1T1L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BACTERIAL FATTY ACID TRANSPORTER FADL REMARK 900 (WILD-TYPE, HEXAGONAL SPACE GROUP P3121) REMARK 900 RELATED ID: 2R4L RELATED DB: PDB REMARK 900 FADL MUTANT P34A REMARK 900 RELATED ID: 2R4M RELATED DB: PDB REMARK 900 FADL MUTANT A77E/S100R REMARK 900 RELATED ID: 2R4N RELATED DB: PDB REMARK 900 FADL MUTANT N33A REMARK 900 RELATED ID: 2R4O RELATED DB: PDB REMARK 900 FADL MUTANT DELTA NPA REMARK 900 RELATED ID: 2R4P RELATED DB: PDB REMARK 900 FADL MUTANT G212E REMARK 900 RELATED ID: 2R88 RELATED DB: PDB REMARK 900 FADL MUTANT DELTA S3 KINK REMARK 900 RELATED ID: 2R8A RELATED DB: PDB REMARK 900 FADL MUTANT DELTA N8 REMARK 900 RELATED ID: 3DWO RELATED DB: PDB REMARK 900 FADL HOMOLOGUE IN PSEUDOMONAS AERUGINOSA REMARK 900 RELATED ID: 3DWN RELATED DB: PDB REMARK 900 FADL MUTANT A77E/S100R DBREF 2R89 A 4 421 UNP P10384 FADL_ECOLI 26 446 DBREF 2R89 B 4 421 UNP P10384 FADL_ECOLI 26 446 SEQADV 2R89 A UNP P10384 PHE 28 DELETION SEQADV 2R89 A UNP P10384 GLN 29 DELETION SEQADV 2R89 A UNP P10384 LEU 30 DELETION SEQADV 2R89 THR A 197 UNP P10384 ILE 222 CONFLICT SEQADV 2R89 HIS A 422 UNP P10384 EXPRESSION TAG SEQADV 2R89 HIS A 423 UNP P10384 EXPRESSION TAG SEQADV 2R89 HIS A 424 UNP P10384 EXPRESSION TAG SEQADV 2R89 HIS A 425 UNP P10384 EXPRESSION TAG SEQADV 2R89 HIS A 426 UNP P10384 EXPRESSION TAG SEQADV 2R89 HIS A 427 UNP P10384 EXPRESSION TAG SEQADV 2R89 B UNP P10384 PHE 28 DELETION SEQADV 2R89 B UNP P10384 GLN 29 DELETION SEQADV 2R89 B UNP P10384 LEU 30 DELETION SEQADV 2R89 THR B 197 UNP P10384 ILE 222 CONFLICT SEQADV 2R89 HIS B 422 UNP P10384 EXPRESSION TAG SEQADV 2R89 HIS B 423 UNP P10384 EXPRESSION TAG SEQADV 2R89 HIS B 424 UNP P10384 EXPRESSION TAG SEQADV 2R89 HIS B 425 UNP P10384 EXPRESSION TAG SEQADV 2R89 HIS B 426 UNP P10384 EXPRESSION TAG SEQADV 2R89 HIS B 427 UNP P10384 EXPRESSION TAG SEQRES 1 A 424 ALA GLY ASN GLU PHE SER SER SER GLY LEU GLY ARG ALA SEQRES 2 A 424 TYR SER GLY GLU GLY ALA ILE ALA ASP ASP ALA GLY ASN SEQRES 3 A 424 VAL SER ARG ASN PRO ALA LEU ILE THR MET PHE ASP ARG SEQRES 4 A 424 PRO THR PHE SER ALA GLY ALA VAL TYR ILE ASP PRO ASP SEQRES 5 A 424 VAL ASN ILE SER GLY THR SER PRO SER GLY ARG SER LEU SEQRES 6 A 424 LYS ALA ASP ASN ILE ALA PRO THR ALA TRP VAL PRO ASN SEQRES 7 A 424 MET HIS PHE VAL ALA PRO ILE ASN ASP GLN PHE GLY TRP SEQRES 8 A 424 GLY ALA SER ILE THR SER ASN TYR GLY LEU ALA THR GLU SEQRES 9 A 424 PHE ASN ASP THR TYR ALA GLY GLY SER VAL GLY GLY THR SEQRES 10 A 424 THR ASP LEU GLU THR MET ASN LEU ASN LEU SER GLY ALA SEQRES 11 A 424 TYR ARG LEU ASN ASN ALA TRP SER PHE GLY LEU GLY PHE SEQRES 12 A 424 ASN ALA VAL TYR ALA ARG ALA LYS ILE GLU ARG PHE ALA SEQRES 13 A 424 GLY ASP LEU GLY GLN LEU VAL ALA GLY GLN ILE MET GLN SEQRES 14 A 424 SER PRO ALA GLY GLN THR GLN GLN GLY GLN ALA LEU ALA SEQRES 15 A 424 ALA THR ALA ASN GLY ILE ASP SER ASN THR LYS THR ALA SEQRES 16 A 424 HIS LEU ASN GLY ASN GLN TRP GLY PHE GLY TRP ASN ALA SEQRES 17 A 424 GLY ILE LEU TYR GLU LEU ASP LYS ASN ASN ARG TYR ALA SEQRES 18 A 424 LEU THR TYR ARG SER GLU VAL LYS ILE ASP PHE LYS GLY SEQRES 19 A 424 ASN TYR SER SER ASP LEU ASN ARG ALA PHE ASN ASN TYR SEQRES 20 A 424 GLY LEU PRO ILE PRO THR ALA THR GLY GLY ALA THR GLN SEQRES 21 A 424 SER GLY TYR LEU THR LEU ASN LEU PRO GLU MET TRP GLU SEQRES 22 A 424 VAL SER GLY TYR ASN ARG VAL ASP PRO GLN TRP ALA ILE SEQRES 23 A 424 HIS TYR SER LEU ALA TYR THR SER TRP SER GLN PHE GLN SEQRES 24 A 424 GLN LEU LYS ALA THR SER THR SER GLY ASP THR LEU PHE SEQRES 25 A 424 GLN LYS HIS GLU GLY PHE LYS ASP ALA TYR ARG ILE ALA SEQRES 26 A 424 LEU GLY THR THR TYR TYR TYR ASP ASP ASN TRP THR PHE SEQRES 27 A 424 ARG THR GLY ILE ALA PHE ASP ASP SER PRO VAL PRO ALA SEQRES 28 A 424 GLN ASN ARG SER ILE SER ILE PRO ASP GLN ASP ARG PHE SEQRES 29 A 424 TRP LEU SER ALA GLY THR THR TYR ALA PHE ASN LYS ASP SEQRES 30 A 424 ALA SER VAL ASP VAL GLY VAL SER TYR MET HIS GLY GLN SEQRES 31 A 424 SER VAL LYS ILE ASN GLU GLY PRO TYR GLN PHE GLU SER SEQRES 32 A 424 GLU GLY LYS ALA TRP LEU PHE GLY THR ASN PHE ASN TYR SEQRES 33 A 424 ALA PHE HIS HIS HIS HIS HIS HIS SEQRES 1 B 424 ALA GLY ASN GLU PHE SER SER SER GLY LEU GLY ARG ALA SEQRES 2 B 424 TYR SER GLY GLU GLY ALA ILE ALA ASP ASP ALA GLY ASN SEQRES 3 B 424 VAL SER ARG ASN PRO ALA LEU ILE THR MET PHE ASP ARG SEQRES 4 B 424 PRO THR PHE SER ALA GLY ALA VAL TYR ILE ASP PRO ASP SEQRES 5 B 424 VAL ASN ILE SER GLY THR SER PRO SER GLY ARG SER LEU SEQRES 6 B 424 LYS ALA ASP ASN ILE ALA PRO THR ALA TRP VAL PRO ASN SEQRES 7 B 424 MET HIS PHE VAL ALA PRO ILE ASN ASP GLN PHE GLY TRP SEQRES 8 B 424 GLY ALA SER ILE THR SER ASN TYR GLY LEU ALA THR GLU SEQRES 9 B 424 PHE ASN ASP THR TYR ALA GLY GLY SER VAL GLY GLY THR SEQRES 10 B 424 THR ASP LEU GLU THR MET ASN LEU ASN LEU SER GLY ALA SEQRES 11 B 424 TYR ARG LEU ASN ASN ALA TRP SER PHE GLY LEU GLY PHE SEQRES 12 B 424 ASN ALA VAL TYR ALA ARG ALA LYS ILE GLU ARG PHE ALA SEQRES 13 B 424 GLY ASP LEU GLY GLN LEU VAL ALA GLY GLN ILE MET GLN SEQRES 14 B 424 SER PRO ALA GLY GLN THR GLN GLN GLY GLN ALA LEU ALA SEQRES 15 B 424 ALA THR ALA ASN GLY ILE ASP SER ASN THR LYS THR ALA SEQRES 16 B 424 HIS LEU ASN GLY ASN GLN TRP GLY PHE GLY TRP ASN ALA SEQRES 17 B 424 GLY ILE LEU TYR GLU LEU ASP LYS ASN ASN ARG TYR ALA SEQRES 18 B 424 LEU THR TYR ARG SER GLU VAL LYS ILE ASP PHE LYS GLY SEQRES 19 B 424 ASN TYR SER SER ASP LEU ASN ARG ALA PHE ASN ASN TYR SEQRES 20 B 424 GLY LEU PRO ILE PRO THR ALA THR GLY GLY ALA THR GLN SEQRES 21 B 424 SER GLY TYR LEU THR LEU ASN LEU PRO GLU MET TRP GLU SEQRES 22 B 424 VAL SER GLY TYR ASN ARG VAL ASP PRO GLN TRP ALA ILE SEQRES 23 B 424 HIS TYR SER LEU ALA TYR THR SER TRP SER GLN PHE GLN SEQRES 24 B 424 GLN LEU LYS ALA THR SER THR SER GLY ASP THR LEU PHE SEQRES 25 B 424 GLN LYS HIS GLU GLY PHE LYS ASP ALA TYR ARG ILE ALA SEQRES 26 B 424 LEU GLY THR THR TYR TYR TYR ASP ASP ASN TRP THR PHE SEQRES 27 B 424 ARG THR GLY ILE ALA PHE ASP ASP SER PRO VAL PRO ALA SEQRES 28 B 424 GLN ASN ARG SER ILE SER ILE PRO ASP GLN ASP ARG PHE SEQRES 29 B 424 TRP LEU SER ALA GLY THR THR TYR ALA PHE ASN LYS ASP SEQRES 30 B 424 ALA SER VAL ASP VAL GLY VAL SER TYR MET HIS GLY GLN SEQRES 31 B 424 SER VAL LYS ILE ASN GLU GLY PRO TYR GLN PHE GLU SER SEQRES 32 B 424 GLU GLY LYS ALA TRP LEU PHE GLY THR ASN PHE ASN TYR SEQRES 33 B 424 ALA PHE HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 9 ARG A 15 1 7 HELIX 2 2 ASP A 26 ARG A 32 5 7 HELIX 3 3 ASN A 33 PHE A 40 5 8 HELIX 4 4 LEU A 162 MET A 171 1 10 HELIX 5 5 THR A 178 ALA A 186 1 9 HELIX 6 6 PRO A 353 ARG A 357 5 5 HELIX 7 7 SER B 9 ARG B 15 1 7 HELIX 8 8 ASP B 26 ARG B 32 5 7 HELIX 9 9 ASN B 33 PHE B 40 5 8 HELIX 10 10 LEU B 162 MET B 171 1 10 HELIX 11 11 THR B 178 ALA B 186 1 9 HELIX 12 12 PRO B 353 ARG B 357 5 5 SHEET 1 A14 GLY A 103 GLU A 107 0 SHEET 2 A14 THR A 120 ARG A 135 -1 O THR A 121 N THR A 106 SHEET 3 A14 PHE A 92 THR A 99 -1 N THR A 99 O ASN A 127 SHEET 4 A14 ALA A 77 PRO A 87 -1 N PHE A 84 O ALA A 96 SHEET 5 A14 THR A 44 THR A 61 -1 N GLY A 48 O ASN A 81 SHEET 6 A14 GLN A 403 ALA A 420 -1 O PHE A 413 N TYR A 51 SHEET 7 A14 ALA A 381 ILE A 397 -1 N SER A 388 O LEU A 412 SHEET 8 A14 ARG A 366 ASN A 378 -1 N TYR A 375 O VAL A 383 SHEET 9 A14 TRP A 339 ASP A 348 -1 N ALA A 346 O TRP A 368 SHEET 10 A14 ALA A 324 TYR A 333 -1 N ILE A 327 O PHE A 347 SHEET 11 A14 TRP A 287 SER A 297 -1 N ALA A 294 O ARG A 326 SHEET 12 A14 GLU A 273 ASP A 284 -1 N TRP A 275 O TYR A 295 SHEET 13 A14 ASN A 221 ARG A 228 -1 N THR A 226 O GLU A 276 SHEET 14 A14 TYR A 215 ASP A 218 -1 N TYR A 215 O TYR A 223 SHEET 1 B 6 GLY A 103 GLU A 107 0 SHEET 2 B 6 THR A 120 ARG A 135 -1 O THR A 121 N THR A 106 SHEET 3 B 6 SER A 141 PHE A 158 -1 O PHE A 142 N TYR A 134 SHEET 4 B 6 LYS A 196 GLY A 212 -1 O GLY A 206 N VAL A 149 SHEET 5 B 6 ASN A 221 ARG A 228 -1 O TYR A 227 N ALA A 211 SHEET 6 B 6 TYR A 215 ASP A 218 -1 N TYR A 215 O TYR A 223 SHEET 1 C 2 VAL A 231 ILE A 233 0 SHEET 2 C 2 LEU A 269 LEU A 271 -1 O LEU A 269 N ILE A 233 SHEET 1 D14 GLY B 103 GLU B 107 0 SHEET 2 D14 THR B 120 ARG B 135 -1 O THR B 121 N THR B 106 SHEET 3 D14 PHE B 92 THR B 99 -1 N THR B 99 O ASN B 127 SHEET 4 D14 ALA B 77 PRO B 87 -1 N PHE B 84 O ALA B 96 SHEET 5 D14 THR B 44 THR B 61 -1 N GLY B 48 O ASN B 81 SHEET 6 D14 GLN B 403 ALA B 420 -1 O PHE B 413 N TYR B 51 SHEET 7 D14 ALA B 381 ILE B 397 -1 N SER B 388 O LEU B 412 SHEET 8 D14 ARG B 366 ASN B 378 -1 N TYR B 375 O VAL B 383 SHEET 9 D14 TRP B 339 ASP B 348 -1 N ALA B 346 O TRP B 368 SHEET 10 D14 ALA B 324 TYR B 333 -1 N ILE B 327 O PHE B 347 SHEET 11 D14 TRP B 287 SER B 297 -1 N ALA B 294 O ARG B 326 SHEET 12 D14 GLU B 273 ASP B 284 -1 N TRP B 275 O TYR B 295 SHEET 13 D14 ASN B 221 ARG B 228 -1 N ALA B 224 O SER B 278 SHEET 14 D14 TYR B 215 ASP B 218 -1 N TYR B 215 O TYR B 223 SHEET 1 E 6 GLY B 103 GLU B 107 0 SHEET 2 E 6 THR B 120 ARG B 135 -1 O THR B 121 N THR B 106 SHEET 3 E 6 SER B 141 PHE B 158 -1 O PHE B 142 N TYR B 134 SHEET 4 E 6 LYS B 196 GLY B 212 -1 O GLY B 206 N VAL B 149 SHEET 5 E 6 ASN B 221 ARG B 228 -1 O TYR B 227 N ALA B 211 SHEET 6 E 6 TYR B 215 ASP B 218 -1 N TYR B 215 O TYR B 223 SHEET 1 F 2 VAL B 231 ILE B 233 0 SHEET 2 F 2 LEU B 269 LEU B 271 -1 O LEU B 269 N ILE B 233 CRYST1 92.015 91.912 289.190 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010868 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003458 0.00000