HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 10-SEP-07 2R8B TITLE THE CRYSTAL STRUCTURE OF THE PROTEIN ATU2452 OF UNKNOWN FUNCTION FROM TITLE 2 AGROBACTERIUM TUMEFACIENS STR. C58 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN ATU2452; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AGR_C_4453P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 ATCC: 33970; SOURCE 6 GENE: AGR_C_4453, ATU2452; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS APC6088, PROTEIN ATU2452, AGROBACTERIUM TUMEFACIENS STR. C58, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,X.XU,H.ZHENG,A.SAVCHENKO,A.M.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 6 13-JUL-11 2R8B 1 VERSN REVDAT 5 17-MAR-09 2R8B 1 JRNL REVDAT 4 24-FEB-09 2R8B 1 VERSN REVDAT 3 10-JUN-08 2R8B 1 JRNL REVDAT 2 20-NOV-07 2R8B 1 JRNL REVDAT 1 25-SEP-07 2R8B 0 JRNL AUTH K.TAN,X.XU,H.ZHENG,A.SAVCHENKO,A.M.EDWARDS,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE PROTEIN ATU2452 OF UNKNOWN JRNL TITL 2 FUNCTION FROM AGROBACTERIUM TUMEFACIENS STR. C58. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 16991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 924 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 690 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 52.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3108 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 54.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.435 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.289 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.249 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.219 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3192 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4326 ; 1.908 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 406 ; 7.742 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;38.584 ;23.239 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;22.655 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;27.195 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 468 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2464 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1415 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2159 ; 0.330 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 118 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.274 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.042 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2051 ; 0.670 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3228 ; 1.175 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1242 ; 2.108 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1098 ; 3.354 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3570 39.1790 4.6780 REMARK 3 T TENSOR REMARK 3 T11: 0.0179 T22: 0.0198 REMARK 3 T33: -0.1943 T12: -0.1012 REMARK 3 T13: 0.0440 T23: -0.0967 REMARK 3 L TENSOR REMARK 3 L11: 3.9040 L22: 4.7491 REMARK 3 L33: 6.3186 L12: -1.7625 REMARK 3 L13: -1.5171 L23: 3.9394 REMARK 3 S TENSOR REMARK 3 S11: -0.2007 S12: 0.0527 S13: -0.4614 REMARK 3 S21: -0.1894 S22: 0.0490 S23: 0.2010 REMARK 3 S31: 0.0805 S32: 0.1583 S33: 0.1517 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 245 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9380 53.3850 36.5700 REMARK 3 T TENSOR REMARK 3 T11: 0.0517 T22: -0.0185 REMARK 3 T33: -0.2016 T12: -0.0876 REMARK 3 T13: 0.1120 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 4.7232 L22: 3.5209 REMARK 3 L33: 6.7586 L12: -1.7414 REMARK 3 L13: -3.5588 L23: 1.7442 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: -0.2010 S13: -0.1985 REMARK 3 S21: 0.1542 S22: -0.1750 S23: 0.4664 REMARK 3 S31: -0.1595 S32: -0.1689 S33: 0.1546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY REMARK 4 REMARK 4 2R8B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-07. REMARK 100 THE RCSB ID CODE IS RCSB044550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18017 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 82.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE, DM, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA CITRATE, 0.2M K/NA TARTRATE, REMARK 280 2.0M AMMONIUM SULFATE, PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.45200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.57750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.36350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.57750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.45200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.36350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS EXPERIMENTALLY REMARK 300 UNKNOWN. FROM MOLECULAR PACKING, IT SEEMS TO BE MONOMERIC. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 GLY A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 LEU A 18 REMARK 465 HIS A 19 REMARK 465 GLU A 20 REMARK 465 ILE A 21 REMARK 465 ALA A 22 REMARK 465 PRO A 23 REMARK 465 PRO A 24 REMARK 465 ALA A 25 REMARK 465 GLU A 26 REMARK 465 LYS A 27 REMARK 465 ALA A 28 REMARK 465 VAL A 29 REMARK 465 ARG A 30 REMARK 465 LYS A 31 REMARK 465 PRO A 32 REMARK 465 LEU A 33 REMARK 465 ASN A 34 REMARK 465 LEU A 35 REMARK 465 LEU A 36 REMARK 465 PRO A 37 REMARK 465 PHE A 38 REMARK 465 ARG A 39 REMARK 465 LYS A 40 REMARK 465 ASP A 41 REMARK 465 THR A 42 REMARK 465 GLY A 247 REMARK 465 GLY A 248 REMARK 465 SER A 249 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 PRO B 2 REMARK 465 ARG B 3 REMARK 465 PRO B 4 REMARK 465 SER B 5 REMARK 465 LEU B 6 REMARK 465 ARG B 7 REMARK 465 ARG B 8 REMARK 465 GLY B 9 REMARK 465 GLU B 10 REMARK 465 GLU B 11 REMARK 465 THR B 12 REMARK 465 SER B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 ARG B 16 REMARK 465 SER B 17 REMARK 465 LEU B 18 REMARK 465 HIS B 19 REMARK 465 GLU B 20 REMARK 465 ILE B 21 REMARK 465 ALA B 22 REMARK 465 PRO B 23 REMARK 465 PRO B 24 REMARK 465 ALA B 25 REMARK 465 GLU B 26 REMARK 465 LYS B 27 REMARK 465 ALA B 28 REMARK 465 VAL B 29 REMARK 465 ARG B 30 REMARK 465 LYS B 31 REMARK 465 PRO B 32 REMARK 465 LEU B 33 REMARK 465 ASN B 34 REMARK 465 LEU B 35 REMARK 465 LEU B 36 REMARK 465 PRO B 37 REMARK 465 PHE B 38 REMARK 465 ARG B 39 REMARK 465 LYS B 40 REMARK 465 ASP B 41 REMARK 465 THR B 42 REMARK 465 GLY B 247 REMARK 465 GLY B 248 REMARK 465 SER B 249 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 PRO B 175 C - N - CA ANGL. DEV. = 13.3 DEGREES REMARK 500 PRO B 175 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 72 -160.40 -166.89 REMARK 500 HIS A 99 85.10 17.12 REMARK 500 SER A 147 -114.05 58.70 REMARK 500 PRO A 225 -178.35 -67.36 REMARK 500 HIS B 99 87.11 21.98 REMARK 500 SER B 147 -111.15 53.04 REMARK 500 ALA B 244 -29.78 -35.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 45 24.3 L L OUTSIDE RANGE REMARK 500 VAL A 189 22.9 L L OUTSIDE RANGE REMARK 500 THR B 45 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 250 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6088 RELATED DB: TARGETDB DBREF 2R8B A 1 247 UNP Q8UCN1 Q8UCN1_AGRT5 1 247 DBREF 2R8B B 1 247 UNP Q8UCN1 Q8UCN1_AGRT5 1 247 SEQADV 2R8B GLY A -1 UNP Q8UCN1 EXPRESSION TAG SEQADV 2R8B HIS A 0 UNP Q8UCN1 EXPRESSION TAG SEQADV 2R8B GLY A 248 UNP Q8UCN1 EXPRESSION TAG SEQADV 2R8B SER A 249 UNP Q8UCN1 EXPRESSION TAG SEQADV 2R8B GLY B -1 UNP Q8UCN1 EXPRESSION TAG SEQADV 2R8B HIS B 0 UNP Q8UCN1 EXPRESSION TAG SEQADV 2R8B GLY B 248 UNP Q8UCN1 EXPRESSION TAG SEQADV 2R8B SER B 249 UNP Q8UCN1 EXPRESSION TAG SEQRES 1 A 251 GLY HIS MSE PRO ARG PRO SER LEU ARG ARG GLY GLU GLU SEQRES 2 A 251 THR SER GLY ALA ARG SER LEU HIS GLU ILE ALA PRO PRO SEQRES 3 A 251 ALA GLU LYS ALA VAL ARG LYS PRO LEU ASN LEU LEU PRO SEQRES 4 A 251 PHE ARG LYS ASP THR PRO MSE THR LYS ASP SER TYR PHE SEQRES 5 A 251 HIS LYS SER ARG ALA GLY VAL ALA GLY ALA PRO LEU PHE SEQRES 6 A 251 VAL LEU LEU HIS GLY THR GLY GLY ASP GLU ASN GLN PHE SEQRES 7 A 251 PHE ASP PHE GLY ALA ARG LEU LEU PRO GLN ALA THR ILE SEQRES 8 A 251 LEU SER PRO VAL GLY ASP VAL SER GLU HIS GLY ALA ALA SEQRES 9 A 251 ARG PHE PHE ARG ARG THR GLY GLU GLY VAL TYR ASP MSE SEQRES 10 A 251 VAL ASP LEU GLU ARG ALA THR GLY LYS MSE ALA ASP PHE SEQRES 11 A 251 ILE LYS ALA ASN ARG GLU HIS TYR GLN ALA GLY PRO VAL SEQRES 12 A 251 ILE GLY LEU GLY PHE SER ASN GLY ALA ASN ILE LEU ALA SEQRES 13 A 251 ASN VAL LEU ILE GLU GLN PRO GLU LEU PHE ASP ALA ALA SEQRES 14 A 251 VAL LEU MSE HIS PRO LEU ILE PRO PHE GLU PRO LYS ILE SEQRES 15 A 251 SER PRO ALA LYS PRO THR ARG ARG VAL LEU ILE THR ALA SEQRES 16 A 251 GLY GLU ARG ASP PRO ILE CYS PRO VAL GLN LEU THR LYS SEQRES 17 A 251 ALA LEU GLU GLU SER LEU LYS ALA GLN GLY GLY THR VAL SEQRES 18 A 251 GLU THR VAL TRP HIS PRO GLY GLY HIS GLU ILE ARG SER SEQRES 19 A 251 GLY GLU ILE ASP ALA VAL ARG GLY PHE LEU ALA ALA TYR SEQRES 20 A 251 GLY GLY GLY SER SEQRES 1 B 251 GLY HIS MSE PRO ARG PRO SER LEU ARG ARG GLY GLU GLU SEQRES 2 B 251 THR SER GLY ALA ARG SER LEU HIS GLU ILE ALA PRO PRO SEQRES 3 B 251 ALA GLU LYS ALA VAL ARG LYS PRO LEU ASN LEU LEU PRO SEQRES 4 B 251 PHE ARG LYS ASP THR PRO MSE THR LYS ASP SER TYR PHE SEQRES 5 B 251 HIS LYS SER ARG ALA GLY VAL ALA GLY ALA PRO LEU PHE SEQRES 6 B 251 VAL LEU LEU HIS GLY THR GLY GLY ASP GLU ASN GLN PHE SEQRES 7 B 251 PHE ASP PHE GLY ALA ARG LEU LEU PRO GLN ALA THR ILE SEQRES 8 B 251 LEU SER PRO VAL GLY ASP VAL SER GLU HIS GLY ALA ALA SEQRES 9 B 251 ARG PHE PHE ARG ARG THR GLY GLU GLY VAL TYR ASP MSE SEQRES 10 B 251 VAL ASP LEU GLU ARG ALA THR GLY LYS MSE ALA ASP PHE SEQRES 11 B 251 ILE LYS ALA ASN ARG GLU HIS TYR GLN ALA GLY PRO VAL SEQRES 12 B 251 ILE GLY LEU GLY PHE SER ASN GLY ALA ASN ILE LEU ALA SEQRES 13 B 251 ASN VAL LEU ILE GLU GLN PRO GLU LEU PHE ASP ALA ALA SEQRES 14 B 251 VAL LEU MSE HIS PRO LEU ILE PRO PHE GLU PRO LYS ILE SEQRES 15 B 251 SER PRO ALA LYS PRO THR ARG ARG VAL LEU ILE THR ALA SEQRES 16 B 251 GLY GLU ARG ASP PRO ILE CYS PRO VAL GLN LEU THR LYS SEQRES 17 B 251 ALA LEU GLU GLU SER LEU LYS ALA GLN GLY GLY THR VAL SEQRES 18 B 251 GLU THR VAL TRP HIS PRO GLY GLY HIS GLU ILE ARG SER SEQRES 19 B 251 GLY GLU ILE ASP ALA VAL ARG GLY PHE LEU ALA ALA TYR SEQRES 20 B 251 GLY GLY GLY SER MODRES 2R8B MSE A 44 MET SELENOMETHIONINE MODRES 2R8B MSE A 115 MET SELENOMETHIONINE MODRES 2R8B MSE A 125 MET SELENOMETHIONINE MODRES 2R8B MSE A 170 MET SELENOMETHIONINE MODRES 2R8B MSE B 44 MET SELENOMETHIONINE MODRES 2R8B MSE B 115 MET SELENOMETHIONINE MODRES 2R8B MSE B 125 MET SELENOMETHIONINE MODRES 2R8B MSE B 170 MET SELENOMETHIONINE HET MSE A 44 8 HET MSE A 115 8 HET MSE A 125 8 HET MSE A 170 8 HET MSE B 44 8 HET MSE B 115 8 HET MSE B 125 8 HET MSE B 170 8 HET SO4 A 250 5 HET SO4 B 250 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *17(H2 O) HELIX 1 1 PHE A 76 LEU A 84 1 9 HELIX 2 2 THR A 108 VAL A 112 5 5 HELIX 3 3 ASP A 114 GLN A 137 1 24 HELIX 4 4 SER A 147 GLN A 160 1 14 HELIX 5 5 PRO A 201 GLY A 216 1 16 HELIX 6 6 ARG A 231 ALA A 243 1 13 HELIX 7 7 ALA A 244 GLY A 246 5 3 HELIX 8 8 MSE B 44 SER B 48 5 5 HELIX 9 9 PHE B 76 ARG B 82 1 7 HELIX 10 10 ASP B 114 GLN B 137 1 24 HELIX 11 11 SER B 147 GLN B 160 1 14 HELIX 12 12 PRO B 201 GLY B 216 1 16 HELIX 13 13 ARG B 231 LEU B 242 1 12 HELIX 14 14 ALA B 243 GLY B 246 5 4 SHEET 1 A 7 HIS A 51 ARG A 54 0 SHEET 2 A 7 THR A 88 PRO A 92 -1 O SER A 91 N LYS A 52 SHEET 3 A 7 LEU A 62 LEU A 66 1 N PHE A 63 O THR A 88 SHEET 4 A 7 VAL A 141 PHE A 146 1 O ILE A 142 N LEU A 62 SHEET 5 A 7 ALA A 166 MSE A 170 1 O MSE A 170 N GLY A 145 SHEET 6 A 7 ARG A 188 GLY A 194 1 O LEU A 190 N LEU A 169 SHEET 7 A 7 THR A 218 HIS A 224 1 O GLU A 220 N ILE A 191 SHEET 1 B 2 VAL A 96 GLU A 98 0 SHEET 2 B 2 ALA A 101 ARG A 103 -1 O ALA A 101 N GLU A 98 SHEET 1 C 7 HIS B 51 ARG B 54 0 SHEET 2 C 7 THR B 88 PRO B 92 -1 O SER B 91 N LYS B 52 SHEET 3 C 7 LEU B 62 LEU B 66 1 N PHE B 63 O THR B 88 SHEET 4 C 7 VAL B 141 PHE B 146 1 O ILE B 142 N LEU B 62 SHEET 5 C 7 ALA B 166 MSE B 170 1 O MSE B 170 N GLY B 145 SHEET 6 C 7 ARG B 188 GLY B 194 1 O LEU B 190 N LEU B 169 SHEET 7 C 7 THR B 218 HIS B 224 1 O GLU B 220 N ILE B 191 SHEET 1 D 2 VAL B 96 GLU B 98 0 SHEET 2 D 2 ALA B 101 ARG B 103 -1 O ARG B 103 N VAL B 96 LINK C PRO A 43 N MSE A 44 1555 1555 1.34 LINK C MSE A 44 N THR A 45 1555 1555 1.33 LINK C ASP A 114 N MSE A 115 1555 1555 1.34 LINK C MSE A 115 N VAL A 116 1555 1555 1.34 LINK C LYS A 124 N MSE A 125 1555 1555 1.34 LINK C MSE A 125 N ALA A 126 1555 1555 1.33 LINK C LEU A 169 N MSE A 170 1555 1555 1.32 LINK C MSE A 170 N HIS A 171 1555 1555 1.33 LINK C PRO B 43 N MSE B 44 1555 1555 1.35 LINK C MSE B 44 N THR B 45 1555 1555 1.33 LINK C ASP B 114 N MSE B 115 1555 1555 1.33 LINK C MSE B 115 N VAL B 116 1555 1555 1.34 LINK C LYS B 124 N MSE B 125 1555 1555 1.33 LINK C MSE B 125 N ALA B 126 1555 1555 1.33 LINK C LEU B 169 N MSE B 170 1555 1555 1.32 LINK C MSE B 170 N HIS B 171 1555 1555 1.33 SITE 1 AC1 6 THR A 69 ARG A 103 PHE A 105 TYR A 113 SITE 2 AC1 6 ASN A 148 ASN A 151 SITE 1 AC2 5 ARG B 103 PHE B 105 TYR B 113 ASN B 148 SITE 2 AC2 5 ASN B 151 CRYST1 58.904 58.727 165.155 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016977 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006055 0.00000