data_2R8G # _entry.id 2R8G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2R8G NDB PD1039 RCSB RCSB044555 WWPDB D_1000044555 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2R8H . unspecified PDB 2R8I . unspecified # _pdbx_database_status.entry_id 2R8G _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-09-10 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, Y.' 1 'Saleh, S.' 2 'Marnette, L.J.' 3 'Egli, M.' 4 'Stone, M.P.' 5 # _citation.id primary _citation.title 'Insertion of dNTPs opposite the 1,N2-propanodeoxyguanosine adduct by Sulfolobus solfataricus P2 DNA polymerase IV' _citation.journal_abbrev Biochemistry _citation.journal_volume 47 _citation.page_first 7322 _citation.page_last 7334 _citation.year 2008 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18563918 _citation.pdbx_database_id_DOI 10.1021/bi800152j # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wang, Y.' 1 primary 'Musser, S.K.' 2 primary 'Saleh, S.' 3 primary 'Marnett, L.J.' 4 primary 'Egli, M.' 5 primary 'Stone, M.P.' 6 # _cell.entry_id 2R8G _cell.length_a 93.5 _cell.length_b 103.3 _cell.length_c 52.8 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2R8G _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 18 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*DGP*DGP*DGP*DGP*DGP*DAP*DAP*DGP*DGP*DAP*DTP*DTP*DT)-3'" 4111.681 1 ? ? ? ? 2 polymer syn "5'-D(*DTP*DCP*DAP*DCP*(P)P*DGP*DAP*DAP*DAP*DTP*DCP*DCP*DTP*DTP*DCP*DCP*DCP*DCP*DC)-3'" 5725.751 1 ? ? ? ? 3 polymer man 'DNA polymerase IV' 40257.879 1 2.7.7.7 R332A ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 3 ? ? ? ? 5 non-polymer syn "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" 507.181 1 ? ? ? ? 6 water nat water 18.015 116 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'dpo4, Pol IV' # _entity_name_sys.entity_id 3 _entity_name_sys.name E.C.2.7.7.7 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DG)(DG)(DA)(DA)(DG)(DG)(DA)(DT)(DT)(DT)' GGGGGAAGGATTT P ? 2 polydeoxyribonucleotide no yes '(DT)(DC)(DA)(DC)P(DG)(DA)(DA)(DA)(DT)(DC)(DC)(DT)(DT)(DC)(DC)(DC)(DC)(DC)' TCACPGAAATCCTTCCCCC T ? 3 'polypeptide(L)' no no ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFIEAIGLDKFFDT ; ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFIEAIGLDKFFDT ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DA n 1 8 DG n 1 9 DG n 1 10 DA n 1 11 DT n 1 12 DT n 1 13 DT n 2 1 DT n 2 2 DC n 2 3 DA n 2 4 DC n 2 5 P n 2 6 DG n 2 7 DA n 2 8 DA n 2 9 DA n 2 10 DT n 2 11 DC n 2 12 DC n 2 13 DT n 2 14 DT n 2 15 DC n 2 16 DC n 2 17 DC n 2 18 DC n 2 19 DC n 3 1 MET n 3 2 ILE n 3 3 VAL n 3 4 LEU n 3 5 PHE n 3 6 VAL n 3 7 ASP n 3 8 PHE n 3 9 ASP n 3 10 TYR n 3 11 PHE n 3 12 TYR n 3 13 ALA n 3 14 GLN n 3 15 VAL n 3 16 GLU n 3 17 GLU n 3 18 VAL n 3 19 LEU n 3 20 ASN n 3 21 PRO n 3 22 SER n 3 23 LEU n 3 24 LYS n 3 25 GLY n 3 26 LYS n 3 27 PRO n 3 28 VAL n 3 29 VAL n 3 30 VAL n 3 31 CYS n 3 32 VAL n 3 33 PHE n 3 34 SER n 3 35 GLY n 3 36 ARG n 3 37 PHE n 3 38 GLU n 3 39 ASP n 3 40 SER n 3 41 GLY n 3 42 ALA n 3 43 VAL n 3 44 ALA n 3 45 THR n 3 46 ALA n 3 47 ASN n 3 48 TYR n 3 49 GLU n 3 50 ALA n 3 51 ARG n 3 52 LYS n 3 53 PHE n 3 54 GLY n 3 55 VAL n 3 56 LYS n 3 57 ALA n 3 58 GLY n 3 59 ILE n 3 60 PRO n 3 61 ILE n 3 62 VAL n 3 63 GLU n 3 64 ALA n 3 65 LYS n 3 66 LYS n 3 67 ILE n 3 68 LEU n 3 69 PRO n 3 70 ASN n 3 71 ALA n 3 72 VAL n 3 73 TYR n 3 74 LEU n 3 75 PRO n 3 76 MET n 3 77 ARG n 3 78 LYS n 3 79 GLU n 3 80 VAL n 3 81 TYR n 3 82 GLN n 3 83 GLN n 3 84 VAL n 3 85 SER n 3 86 SER n 3 87 ARG n 3 88 ILE n 3 89 MET n 3 90 ASN n 3 91 LEU n 3 92 LEU n 3 93 ARG n 3 94 GLU n 3 95 TYR n 3 96 SER n 3 97 GLU n 3 98 LYS n 3 99 ILE n 3 100 GLU n 3 101 ILE n 3 102 ALA n 3 103 SER n 3 104 ILE n 3 105 ASP n 3 106 GLU n 3 107 ALA n 3 108 TYR n 3 109 LEU n 3 110 ASP n 3 111 ILE n 3 112 SER n 3 113 ASP n 3 114 LYS n 3 115 VAL n 3 116 ARG n 3 117 ASP n 3 118 TYR n 3 119 ARG n 3 120 GLU n 3 121 ALA n 3 122 TYR n 3 123 ASN n 3 124 LEU n 3 125 GLY n 3 126 LEU n 3 127 GLU n 3 128 ILE n 3 129 LYS n 3 130 ASN n 3 131 LYS n 3 132 ILE n 3 133 LEU n 3 134 GLU n 3 135 LYS n 3 136 GLU n 3 137 LYS n 3 138 ILE n 3 139 THR n 3 140 VAL n 3 141 THR n 3 142 VAL n 3 143 GLY n 3 144 ILE n 3 145 SER n 3 146 LYS n 3 147 ASN n 3 148 LYS n 3 149 VAL n 3 150 PHE n 3 151 ALA n 3 152 LYS n 3 153 ILE n 3 154 ALA n 3 155 ALA n 3 156 ASP n 3 157 MET n 3 158 ALA n 3 159 LYS n 3 160 PRO n 3 161 ASN n 3 162 GLY n 3 163 ILE n 3 164 LYS n 3 165 VAL n 3 166 ILE n 3 167 ASP n 3 168 ASP n 3 169 GLU n 3 170 GLU n 3 171 VAL n 3 172 LYS n 3 173 ARG n 3 174 LEU n 3 175 ILE n 3 176 ARG n 3 177 GLU n 3 178 LEU n 3 179 ASP n 3 180 ILE n 3 181 ALA n 3 182 ASP n 3 183 VAL n 3 184 PRO n 3 185 GLY n 3 186 ILE n 3 187 GLY n 3 188 ASN n 3 189 ILE n 3 190 THR n 3 191 ALA n 3 192 GLU n 3 193 LYS n 3 194 LEU n 3 195 LYS n 3 196 LYS n 3 197 LEU n 3 198 GLY n 3 199 ILE n 3 200 ASN n 3 201 LYS n 3 202 LEU n 3 203 VAL n 3 204 ASP n 3 205 THR n 3 206 LEU n 3 207 SER n 3 208 ILE n 3 209 GLU n 3 210 PHE n 3 211 ASP n 3 212 LYS n 3 213 LEU n 3 214 LYS n 3 215 GLY n 3 216 MET n 3 217 ILE n 3 218 GLY n 3 219 GLU n 3 220 ALA n 3 221 LYS n 3 222 ALA n 3 223 LYS n 3 224 TYR n 3 225 LEU n 3 226 ILE n 3 227 SER n 3 228 LEU n 3 229 ALA n 3 230 ARG n 3 231 ASP n 3 232 GLU n 3 233 TYR n 3 234 ASN n 3 235 GLU n 3 236 PRO n 3 237 ILE n 3 238 ARG n 3 239 THR n 3 240 ARG n 3 241 VAL n 3 242 ARG n 3 243 LYS n 3 244 SER n 3 245 ILE n 3 246 GLY n 3 247 ARG n 3 248 ILE n 3 249 VAL n 3 250 THR n 3 251 MET n 3 252 LYS n 3 253 ARG n 3 254 ASN n 3 255 SER n 3 256 ARG n 3 257 ASN n 3 258 LEU n 3 259 GLU n 3 260 GLU n 3 261 ILE n 3 262 LYS n 3 263 PRO n 3 264 TYR n 3 265 LEU n 3 266 PHE n 3 267 ARG n 3 268 ALA n 3 269 ILE n 3 270 GLU n 3 271 GLU n 3 272 SER n 3 273 TYR n 3 274 TYR n 3 275 LYS n 3 276 LEU n 3 277 ASP n 3 278 LYS n 3 279 ARG n 3 280 ILE n 3 281 PRO n 3 282 LYS n 3 283 ALA n 3 284 ILE n 3 285 HIS n 3 286 VAL n 3 287 VAL n 3 288 ALA n 3 289 VAL n 3 290 THR n 3 291 GLU n 3 292 ASP n 3 293 LEU n 3 294 ASP n 3 295 ILE n 3 296 VAL n 3 297 SER n 3 298 ARG n 3 299 GLY n 3 300 ARG n 3 301 THR n 3 302 PHE n 3 303 PRO n 3 304 HIS n 3 305 GLY n 3 306 ILE n 3 307 SER n 3 308 LYS n 3 309 GLU n 3 310 THR n 3 311 ALA n 3 312 TYR n 3 313 SER n 3 314 GLU n 3 315 SER n 3 316 VAL n 3 317 LYS n 3 318 LEU n 3 319 LEU n 3 320 GLN n 3 321 LYS n 3 322 ILE n 3 323 LEU n 3 324 GLU n 3 325 GLU n 3 326 ASP n 3 327 GLU n 3 328 ARG n 3 329 LYS n 3 330 ILE n 3 331 ARG n 3 332 ARG n 3 333 ILE n 3 334 GLY n 3 335 VAL n 3 336 ARG n 3 337 PHE n 3 338 SER n 3 339 LYS n 3 340 PHE n 3 341 ILE n 3 342 GLU n 3 343 ALA n 3 344 ILE n 3 345 GLY n 3 346 LEU n 3 347 ASP n 3 348 LYS n 3 349 PHE n 3 350 PHE n 3 351 ASP n 3 352 THR n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dbh, dpo4' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus solfataricus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'purified using heat denaturation, Ni2+-nitriloacetate chromatography, and ion-exchange chromatography' # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 PDB 2R8G 2R8G 501 GGGGGAAGGATTT ? 2 2 PDB 2R8G 2R8G 601 TCACPAAATCCTTCCCCC ? 3 3 UNP DPO42_SULSO Q97W02 1 ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFIEAIGLDKFFDT ; ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2R8G P 1 ? 13 ? 2R8G 501 ? 513 ? 501 513 2 2 2R8G T 1 ? 19 ? 2R8G 601 ? 618 ? 601 618 3 3 2R8G A 1 ? 352 ? Q97W02 1 ? 352 ? 1 352 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DGT non-polymer . "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O13 P3' 507.181 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 P 'DNA linking' n ;2'-DEOXY-N1,N2-PROPANO GUANOSINE MONOPHOSPHATE ; ? 'C13 H18 N5 O7 P' 387.285 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2R8G _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_percent_sol 51.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.pdbx_details 'pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.92 # _reflns.entry_id 2R8G _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.70 _reflns.d_resolution_low 50.0 _reflns.number_all 25290 _reflns.number_obs 17770 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2R8G _refine.ls_d_res_high 2.70 _refine.ls_d_res_low 50.0 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 25290 _refine.ls_number_reflns_obs 17770 _refine.ls_number_reflns_R_free 17770 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2081 _refine.ls_R_factor_R_work 0.208 _refine.ls_R_factor_R_free 0.258 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2743 _refine_hist.pdbx_number_atoms_nucleic_acid 615 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 116 _refine_hist.number_atoms_total 3508 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 50.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.37 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.61 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.11 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2R8G _struct.title ;Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase ; _struct.pdbx_descriptor 'DNA polymerase IV (E.C.2.7.7.7)/DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2R8G _struct_keywords.pdbx_keywords 'REPLICATION, TRANSFERASE/DNA' _struct_keywords.text 'exocyclic adducts, replication bypass, translesion, polymerase, frameshifting, REPLICATION, TRANSFERASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 6 ? I N N 6 ? J N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR C 10 ? LEU C 19 ? TYR A 10 LEU A 19 1 ? 10 HELX_P HELX_P2 2 ASN C 20 ? LYS C 24 ? ASN A 20 LYS A 24 5 ? 5 HELX_P HELX_P3 3 ASN C 47 ? LYS C 52 ? ASN A 47 LYS A 52 1 ? 6 HELX_P HELX_P4 4 PRO C 60 ? LEU C 68 ? PRO A 60 LEU A 68 1 ? 9 HELX_P HELX_P5 5 ARG C 77 ? GLU C 94 ? ARG A 77 GLU A 94 1 ? 18 HELX_P HELX_P6 6 ALA C 121 ? GLU C 136 ? ALA A 121 GLU A 136 1 ? 16 HELX_P HELX_P7 7 ASN C 147 ? LYS C 159 ? ASN A 147 LYS A 159 1 ? 13 HELX_P HELX_P8 8 ASP C 168 ? LEU C 178 ? ASP A 168 LEU A 178 1 ? 11 HELX_P HELX_P9 9 ASP C 179 ? VAL C 183 ? ASP A 179 VAL A 183 5 ? 5 HELX_P HELX_P10 10 GLY C 187 ? LEU C 194 ? GLY A 187 LEU A 194 1 ? 8 HELX_P HELX_P11 11 LEU C 202 ? LEU C 206 ? LEU A 202 LEU A 206 5 ? 5 HELX_P HELX_P12 12 GLU C 209 ? GLY C 218 ? GLU A 209 GLY A 218 1 ? 10 HELX_P HELX_P13 13 GLY C 218 ? ARG C 230 ? GLY A 218 ARG A 230 1 ? 13 HELX_P HELX_P14 14 ASN C 257 ? ASP C 277 ? ASN A 257 ASP A 277 1 ? 21 HELX_P HELX_P15 15 SER C 307 ? ASP C 326 ? SER A 307 ASP A 326 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? C ASP 7 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 7 A CA 8002 1_555 ? ? ? ? ? ? ? 2.729 ? metalc2 metalc ? ? C PHE 8 O ? ? ? 1_555 E CA . CA ? ? A PHE 8 A CA 8002 1_555 ? ? ? ? ? ? ? 2.507 ? metalc3 metalc ? ? C ASP 105 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 105 A CA 8002 1_555 ? ? ? ? ? ? ? 2.700 ? metalc4 metalc ? ? C ALA 181 O ? ? ? 1_555 D CA . CA ? ? A ALA 181 A CA 8001 1_555 ? ? ? ? ? ? ? 2.731 ? metalc5 metalc ? ? C ILE 186 O ? ? ? 1_555 D CA . CA ? ? A ILE 186 A CA 8001 1_555 ? ? ? ? ? ? ? 2.432 ? metalc6 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 8001 A HOH 9208 1_555 ? ? ? ? ? ? ? 2.812 ? metalc7 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 8001 A HOH 9083 1_555 ? ? ? ? ? ? ? 2.427 ? metalc8 metalc ? ? D CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 8001 P HOH 9610 1_555 ? ? ? ? ? ? ? 2.452 ? metalc9 metalc ? ? E CA . CA ? ? ? 1_555 G DGT . O3G ? ? A CA 8002 A DGT 7000 1_555 ? ? ? ? ? ? ? 2.515 ? metalc10 metalc ? ? E CA . CA ? ? ? 1_555 G DGT . O2G ? ? A CA 8002 A DGT 7000 1_555 ? ? ? ? ? ? ? 2.677 ? metalc11 metalc ? ? E CA . CA ? ? ? 1_555 G DGT . O2B ? ? A CA 8002 A DGT 7000 1_555 ? ? ? ? ? ? ? 2.857 ? metalc12 metalc ? ? E CA . CA ? ? ? 1_555 G DGT . O2A ? ? A CA 8002 A DGT 7000 1_555 ? ? ? ? ? ? ? 2.578 ? metalc13 metalc ? ? F CA . CA ? ? ? 1_555 G DGT . O2A ? ? A CA 8003 A DGT 7000 1_555 ? ? ? ? ? ? ? 2.974 ? covale1 covale ? ? B DC 4 "O3'" ? ? ? 1_555 B P 5 P ? ? T DC 604 T P 605 1_555 ? ? ? ? ? ? ? 1.601 ? covale2 covale ? ? B P 5 "O3'" ? ? ? 1_555 B DA 7 P ? ? T P 605 T DA 606 1_555 ? ? ? ? ? ? ? 1.600 ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 19 N3 ? ? P DG 501 T DC 618 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 19 O2 ? ? P DG 501 T DC 618 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 19 N4 ? ? P DG 501 T DC 618 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 18 N3 ? ? P DG 502 T DC 617 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 18 O2 ? ? P DG 502 T DC 617 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 18 N4 ? ? P DG 502 T DC 617 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 17 N3 ? ? P DG 503 T DC 616 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 17 O2 ? ? P DG 503 T DC 616 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 17 N4 ? ? P DG 503 T DC 616 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 16 N3 ? ? P DG 504 T DC 615 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 16 O2 ? ? P DG 504 T DC 615 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 16 N4 ? ? P DG 504 T DC 615 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 15 N3 ? ? P DG 505 T DC 614 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 15 O2 ? ? P DG 505 T DC 614 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 15 N4 ? ? P DG 505 T DC 614 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 14 N3 ? ? P DA 506 T DT 613 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 14 O4 ? ? P DA 506 T DT 613 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 13 N3 ? ? P DA 507 T DT 612 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 13 O4 ? ? P DA 507 T DT 612 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 12 N3 ? ? P DG 508 T DC 611 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 12 O2 ? ? P DG 508 T DC 611 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 12 N4 ? ? P DG 508 T DC 611 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 11 N3 ? ? P DG 509 T DC 610 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 11 O2 ? ? P DG 509 T DC 610 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 11 N4 ? ? P DG 509 T DC 610 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 10 N3 ? ? P DA 510 T DT 609 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 10 O4 ? ? P DA 510 T DT 609 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 9 N1 ? ? P DT 511 T DA 608 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 9 N6 ? ? P DT 511 T DA 608 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 8 N1 ? ? P DT 512 T DA 607 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 8 N6 ? ? P DT 512 T DA 607 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 7 N1 ? ? P DT 513 T DA 606 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 7 N6 ? ? P DT 513 T DA 606 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 159 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 159 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 160 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 160 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.10 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE C 99 ? SER C 103 ? ILE A 99 SER A 103 A 2 GLU C 106 ? ASP C 110 ? GLU A 106 ASP A 110 A 3 VAL C 3 ? PHE C 8 ? VAL A 3 PHE A 8 A 4 VAL C 140 ? SER C 145 ? VAL A 140 SER A 145 A 5 ILE C 163 ? VAL C 165 ? ILE A 163 VAL A 165 B 1 GLY C 41 ? ALA C 46 ? GLY A 41 ALA A 46 B 2 VAL C 28 ? PHE C 33 ? VAL A 28 PHE A 33 B 3 VAL C 72 ? PRO C 75 ? VAL A 72 PRO A 75 C 1 SER C 244 ? SER C 255 ? SER A 244 SER A 255 C 2 ILE C 330 ? PHE C 340 ? ILE A 330 PHE A 340 C 3 PRO C 281 ? THR C 290 ? PRO A 281 THR A 290 C 4 ILE C 295 ? THR C 301 ? ILE A 295 THR A 301 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU C 100 ? N GLU A 100 O TYR C 108 ? O TYR A 108 A 2 3 O ALA C 107 ? O ALA A 107 N VAL C 6 ? N VAL A 6 A 3 4 N PHE C 5 ? N PHE A 5 O GLY C 143 ? O GLY A 143 A 4 5 N ILE C 144 ? N ILE A 144 O LYS C 164 ? O LYS A 164 B 1 2 O ALA C 44 ? O ALA A 44 N VAL C 30 ? N VAL A 30 B 2 3 N CYS C 31 ? N CYS A 31 O LEU C 74 ? O LEU A 74 C 1 2 N ILE C 245 ? N ILE A 245 O PHE C 337 ? O PHE A 337 C 2 3 O ARG C 332 ? O ARG A 332 N VAL C 289 ? N VAL A 289 C 3 4 N ALA C 288 ? N ALA A 288 O VAL C 296 ? O VAL A 296 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CA A 8001' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CA A 8002' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CA A 8003' AC4 Software ? ? ? ? 17 'BINDING SITE FOR RESIDUE DGT A 7000' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ALA C 181 ? ALA A 181 . ? 1_555 ? 2 AC1 6 ILE C 186 ? ILE A 186 . ? 1_555 ? 3 AC1 6 HOH J . ? HOH A 9083 . ? 1_555 ? 4 AC1 6 HOH J . ? HOH A 9208 . ? 1_555 ? 5 AC1 6 DT A 13 ? DT P 513 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH P 9610 . ? 1_555 ? 7 AC2 3 ASP C 7 ? ASP A 7 . ? 1_555 ? 8 AC2 3 PHE C 8 ? PHE A 8 . ? 1_555 ? 9 AC2 3 ASP C 105 ? ASP A 105 . ? 1_555 ? 10 AC3 2 ASP C 7 ? ASP A 7 . ? 1_555 ? 11 AC3 2 GLU C 106 ? GLU A 106 . ? 1_555 ? 12 AC4 17 ASP C 7 ? ASP A 7 . ? 1_555 ? 13 AC4 17 PHE C 8 ? PHE A 8 . ? 1_555 ? 14 AC4 17 ASP C 9 ? ASP A 9 . ? 1_555 ? 15 AC4 17 TYR C 10 ? TYR A 10 . ? 1_555 ? 16 AC4 17 PHE C 11 ? PHE A 11 . ? 1_555 ? 17 AC4 17 TYR C 12 ? TYR A 12 . ? 1_555 ? 18 AC4 17 ALA C 44 ? ALA A 44 . ? 1_555 ? 19 AC4 17 THR C 45 ? THR A 45 . ? 1_555 ? 20 AC4 17 TYR C 48 ? TYR A 48 . ? 1_555 ? 21 AC4 17 ARG C 51 ? ARG A 51 . ? 1_555 ? 22 AC4 17 ASP C 105 ? ASP A 105 . ? 1_555 ? 23 AC4 17 LYS C 159 ? LYS A 159 . ? 1_555 ? 24 AC4 17 HOH J . ? HOH A 8601 . ? 1_555 ? 25 AC4 17 HOH J . ? HOH A 8602 . ? 1_555 ? 26 AC4 17 HOH J . ? HOH A 8622 . ? 1_555 ? 27 AC4 17 HOH J . ? HOH A 8802 . ? 1_555 ? 28 AC4 17 DC B 4 ? DC T 604 . ? 1_555 ? # _atom_sites.entry_id 2R8G _atom_sites.fract_transf_matrix[1][1] 0.010695 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009681 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018939 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 501 501 DG DG P . n A 1 2 DG 2 502 502 DG DG P . n A 1 3 DG 3 503 503 DG DG P . n A 1 4 DG 4 504 504 DG DG P . n A 1 5 DG 5 505 505 DG DG P . n A 1 6 DA 6 506 506 DA DA P . n A 1 7 DA 7 507 507 DA DA P . n A 1 8 DG 8 508 508 DG DG P . n A 1 9 DG 9 509 509 DG DG P . n A 1 10 DA 10 510 510 DA DA P . n A 1 11 DT 11 511 511 DT DT P . n A 1 12 DT 12 512 512 DT DT P . n A 1 13 DT 13 513 513 DT DT P . n B 2 1 DT 1 601 601 DT DT T . n B 2 2 DC 2 602 602 DC DC T . n B 2 3 DA 3 603 603 DA DA T . n B 2 4 DC 4 604 604 DC DC T . n B 2 5 P 5 605 605 P P T . n B 2 6 DG 6 605 ? ? ? T A n B 2 7 DA 7 606 606 DA DA T . n B 2 8 DA 8 607 607 DA DA T . n B 2 9 DA 9 608 608 DA DA T . n B 2 10 DT 10 609 609 DT DT T . n B 2 11 DC 11 610 610 DC DC T . n B 2 12 DC 12 611 611 DC DC T . n B 2 13 DT 13 612 612 DT DT T . n B 2 14 DT 14 613 613 DT DT T . n B 2 15 DC 15 614 614 DC DC T . n B 2 16 DC 16 615 615 DC DC T . n B 2 17 DC 17 616 616 DC DC T . n B 2 18 DC 18 617 617 DC DC T . n B 2 19 DC 19 618 618 DC DC T . n C 3 1 MET 1 1 1 MET MET A . n C 3 2 ILE 2 2 2 ILE ILE A . n C 3 3 VAL 3 3 3 VAL VAL A . n C 3 4 LEU 4 4 4 LEU LEU A . n C 3 5 PHE 5 5 5 PHE PHE A . n C 3 6 VAL 6 6 6 VAL VAL A . n C 3 7 ASP 7 7 7 ASP ASP A . n C 3 8 PHE 8 8 8 PHE PHE A . n C 3 9 ASP 9 9 9 ASP ASP A . n C 3 10 TYR 10 10 10 TYR TYR A . n C 3 11 PHE 11 11 11 PHE PHE A . n C 3 12 TYR 12 12 12 TYR TYR A . n C 3 13 ALA 13 13 13 ALA ALA A . n C 3 14 GLN 14 14 14 GLN GLN A . n C 3 15 VAL 15 15 15 VAL VAL A . n C 3 16 GLU 16 16 16 GLU GLU A . n C 3 17 GLU 17 17 17 GLU GLU A . n C 3 18 VAL 18 18 18 VAL VAL A . n C 3 19 LEU 19 19 19 LEU LEU A . n C 3 20 ASN 20 20 20 ASN ASN A . n C 3 21 PRO 21 21 21 PRO PRO A . n C 3 22 SER 22 22 22 SER SER A . n C 3 23 LEU 23 23 23 LEU LEU A . n C 3 24 LYS 24 24 24 LYS LYS A . n C 3 25 GLY 25 25 25 GLY GLY A . n C 3 26 LYS 26 26 26 LYS LYS A . n C 3 27 PRO 27 27 27 PRO PRO A . n C 3 28 VAL 28 28 28 VAL VAL A . n C 3 29 VAL 29 29 29 VAL VAL A . n C 3 30 VAL 30 30 30 VAL VAL A . n C 3 31 CYS 31 31 31 CYS CYS A . n C 3 32 VAL 32 32 32 VAL VAL A . n C 3 33 PHE 33 33 33 PHE PHE A . n C 3 34 SER 34 34 34 SER SER A . n C 3 35 GLY 35 35 35 GLY GLY A . n C 3 36 ARG 36 36 36 ARG ARG A . n C 3 37 PHE 37 37 37 PHE PHE A . n C 3 38 GLU 38 38 38 GLU GLU A . n C 3 39 ASP 39 39 39 ASP ASP A . n C 3 40 SER 40 40 40 SER SER A . n C 3 41 GLY 41 41 41 GLY GLY A . n C 3 42 ALA 42 42 42 ALA ALA A . n C 3 43 VAL 43 43 43 VAL VAL A . n C 3 44 ALA 44 44 44 ALA ALA A . n C 3 45 THR 45 45 45 THR THR A . n C 3 46 ALA 46 46 46 ALA ALA A . n C 3 47 ASN 47 47 47 ASN ASN A . n C 3 48 TYR 48 48 48 TYR TYR A . n C 3 49 GLU 49 49 49 GLU GLU A . n C 3 50 ALA 50 50 50 ALA ALA A . n C 3 51 ARG 51 51 51 ARG ARG A . n C 3 52 LYS 52 52 52 LYS LYS A . n C 3 53 PHE 53 53 53 PHE PHE A . n C 3 54 GLY 54 54 54 GLY GLY A . n C 3 55 VAL 55 55 55 VAL VAL A . n C 3 56 LYS 56 56 56 LYS LYS A . n C 3 57 ALA 57 57 57 ALA ALA A . n C 3 58 GLY 58 58 58 GLY GLY A . n C 3 59 ILE 59 59 59 ILE ILE A . n C 3 60 PRO 60 60 60 PRO PRO A . n C 3 61 ILE 61 61 61 ILE ILE A . n C 3 62 VAL 62 62 62 VAL VAL A . n C 3 63 GLU 63 63 63 GLU GLU A . n C 3 64 ALA 64 64 64 ALA ALA A . n C 3 65 LYS 65 65 65 LYS LYS A . n C 3 66 LYS 66 66 66 LYS LYS A . n C 3 67 ILE 67 67 67 ILE ILE A . n C 3 68 LEU 68 68 68 LEU LEU A . n C 3 69 PRO 69 69 69 PRO PRO A . n C 3 70 ASN 70 70 70 ASN ASN A . n C 3 71 ALA 71 71 71 ALA ALA A . n C 3 72 VAL 72 72 72 VAL VAL A . n C 3 73 TYR 73 73 73 TYR TYR A . n C 3 74 LEU 74 74 74 LEU LEU A . n C 3 75 PRO 75 75 75 PRO PRO A . n C 3 76 MET 76 76 76 MET MET A . n C 3 77 ARG 77 77 77 ARG ARG A . n C 3 78 LYS 78 78 78 LYS LYS A . n C 3 79 GLU 79 79 79 GLU GLU A . n C 3 80 VAL 80 80 80 VAL VAL A . n C 3 81 TYR 81 81 81 TYR TYR A . n C 3 82 GLN 82 82 82 GLN GLN A . n C 3 83 GLN 83 83 83 GLN GLN A . n C 3 84 VAL 84 84 84 VAL VAL A . n C 3 85 SER 85 85 85 SER SER A . n C 3 86 SER 86 86 86 SER SER A . n C 3 87 ARG 87 87 87 ARG ARG A . n C 3 88 ILE 88 88 88 ILE ILE A . n C 3 89 MET 89 89 89 MET MET A . n C 3 90 ASN 90 90 90 ASN ASN A . n C 3 91 LEU 91 91 91 LEU LEU A . n C 3 92 LEU 92 92 92 LEU LEU A . n C 3 93 ARG 93 93 93 ARG ARG A . n C 3 94 GLU 94 94 94 GLU GLU A . n C 3 95 TYR 95 95 95 TYR TYR A . n C 3 96 SER 96 96 96 SER SER A . n C 3 97 GLU 97 97 97 GLU GLU A . n C 3 98 LYS 98 98 98 LYS LYS A . n C 3 99 ILE 99 99 99 ILE ILE A . n C 3 100 GLU 100 100 100 GLU GLU A . n C 3 101 ILE 101 101 101 ILE ILE A . n C 3 102 ALA 102 102 102 ALA ALA A . n C 3 103 SER 103 103 103 SER SER A . n C 3 104 ILE 104 104 104 ILE ILE A . n C 3 105 ASP 105 105 105 ASP ASP A . n C 3 106 GLU 106 106 106 GLU GLU A . n C 3 107 ALA 107 107 107 ALA ALA A . n C 3 108 TYR 108 108 108 TYR TYR A . n C 3 109 LEU 109 109 109 LEU LEU A . n C 3 110 ASP 110 110 110 ASP ASP A . n C 3 111 ILE 111 111 111 ILE ILE A . n C 3 112 SER 112 112 112 SER SER A . n C 3 113 ASP 113 113 113 ASP ASP A . n C 3 114 LYS 114 114 114 LYS LYS A . n C 3 115 VAL 115 115 115 VAL VAL A . n C 3 116 ARG 116 116 116 ARG ARG A . n C 3 117 ASP 117 117 117 ASP ASP A . n C 3 118 TYR 118 118 118 TYR TYR A . n C 3 119 ARG 119 119 119 ARG ARG A . n C 3 120 GLU 120 120 120 GLU GLU A . n C 3 121 ALA 121 121 121 ALA ALA A . n C 3 122 TYR 122 122 122 TYR TYR A . n C 3 123 ASN 123 123 123 ASN ASN A . n C 3 124 LEU 124 124 124 LEU LEU A . n C 3 125 GLY 125 125 125 GLY GLY A . n C 3 126 LEU 126 126 126 LEU LEU A . n C 3 127 GLU 127 127 127 GLU GLU A . n C 3 128 ILE 128 128 128 ILE ILE A . n C 3 129 LYS 129 129 129 LYS LYS A . n C 3 130 ASN 130 130 130 ASN ASN A . n C 3 131 LYS 131 131 131 LYS LYS A . n C 3 132 ILE 132 132 132 ILE ILE A . n C 3 133 LEU 133 133 133 LEU LEU A . n C 3 134 GLU 134 134 134 GLU GLU A . n C 3 135 LYS 135 135 135 LYS LYS A . n C 3 136 GLU 136 136 136 GLU GLU A . n C 3 137 LYS 137 137 137 LYS LYS A . n C 3 138 ILE 138 138 138 ILE ILE A . n C 3 139 THR 139 139 139 THR THR A . n C 3 140 VAL 140 140 140 VAL VAL A . n C 3 141 THR 141 141 141 THR THR A . n C 3 142 VAL 142 142 142 VAL VAL A . n C 3 143 GLY 143 143 143 GLY GLY A . n C 3 144 ILE 144 144 144 ILE ILE A . n C 3 145 SER 145 145 145 SER SER A . n C 3 146 LYS 146 146 146 LYS LYS A . n C 3 147 ASN 147 147 147 ASN ASN A . n C 3 148 LYS 148 148 148 LYS LYS A . n C 3 149 VAL 149 149 149 VAL VAL A . n C 3 150 PHE 150 150 150 PHE PHE A . n C 3 151 ALA 151 151 151 ALA ALA A . n C 3 152 LYS 152 152 152 LYS LYS A . n C 3 153 ILE 153 153 153 ILE ILE A . n C 3 154 ALA 154 154 154 ALA ALA A . n C 3 155 ALA 155 155 155 ALA ALA A . n C 3 156 ASP 156 156 156 ASP ASP A . n C 3 157 MET 157 157 157 MET MET A . n C 3 158 ALA 158 158 158 ALA ALA A . n C 3 159 LYS 159 159 159 LYS LYS A . n C 3 160 PRO 160 160 160 PRO PRO A . n C 3 161 ASN 161 161 161 ASN ASN A . n C 3 162 GLY 162 162 162 GLY GLY A . n C 3 163 ILE 163 163 163 ILE ILE A . n C 3 164 LYS 164 164 164 LYS LYS A . n C 3 165 VAL 165 165 165 VAL VAL A . n C 3 166 ILE 166 166 166 ILE ILE A . n C 3 167 ASP 167 167 167 ASP ASP A . n C 3 168 ASP 168 168 168 ASP ASP A . n C 3 169 GLU 169 169 169 GLU GLU A . n C 3 170 GLU 170 170 170 GLU GLU A . n C 3 171 VAL 171 171 171 VAL VAL A . n C 3 172 LYS 172 172 172 LYS LYS A . n C 3 173 ARG 173 173 173 ARG ARG A . n C 3 174 LEU 174 174 174 LEU LEU A . n C 3 175 ILE 175 175 175 ILE ILE A . n C 3 176 ARG 176 176 176 ARG ARG A . n C 3 177 GLU 177 177 177 GLU GLU A . n C 3 178 LEU 178 178 178 LEU LEU A . n C 3 179 ASP 179 179 179 ASP ASP A . n C 3 180 ILE 180 180 180 ILE ILE A . n C 3 181 ALA 181 181 181 ALA ALA A . n C 3 182 ASP 182 182 182 ASP ASP A . n C 3 183 VAL 183 183 183 VAL VAL A . n C 3 184 PRO 184 184 184 PRO PRO A . n C 3 185 GLY 185 185 185 GLY GLY A . n C 3 186 ILE 186 186 186 ILE ILE A . n C 3 187 GLY 187 187 187 GLY GLY A . n C 3 188 ASN 188 188 188 ASN ASN A . n C 3 189 ILE 189 189 189 ILE ILE A . n C 3 190 THR 190 190 190 THR THR A . n C 3 191 ALA 191 191 191 ALA ALA A . n C 3 192 GLU 192 192 192 GLU GLU A . n C 3 193 LYS 193 193 193 LYS LYS A . n C 3 194 LEU 194 194 194 LEU LEU A . n C 3 195 LYS 195 195 195 LYS LYS A . n C 3 196 LYS 196 196 196 LYS LYS A . n C 3 197 LEU 197 197 197 LEU LEU A . n C 3 198 GLY 198 198 198 GLY GLY A . n C 3 199 ILE 199 199 199 ILE ILE A . n C 3 200 ASN 200 200 200 ASN ASN A . n C 3 201 LYS 201 201 201 LYS LYS A . n C 3 202 LEU 202 202 202 LEU LEU A . n C 3 203 VAL 203 203 203 VAL VAL A . n C 3 204 ASP 204 204 204 ASP ASP A . n C 3 205 THR 205 205 205 THR THR A . n C 3 206 LEU 206 206 206 LEU LEU A . n C 3 207 SER 207 207 207 SER SER A . n C 3 208 ILE 208 208 208 ILE ILE A . n C 3 209 GLU 209 209 209 GLU GLU A . n C 3 210 PHE 210 210 210 PHE PHE A . n C 3 211 ASP 211 211 211 ASP ASP A . n C 3 212 LYS 212 212 212 LYS LYS A . n C 3 213 LEU 213 213 213 LEU LEU A . n C 3 214 LYS 214 214 214 LYS LYS A . n C 3 215 GLY 215 215 215 GLY GLY A . n C 3 216 MET 216 216 216 MET MET A . n C 3 217 ILE 217 217 217 ILE ILE A . n C 3 218 GLY 218 218 218 GLY GLY A . n C 3 219 GLU 219 219 219 GLU GLU A . n C 3 220 ALA 220 220 220 ALA ALA A . n C 3 221 LYS 221 221 221 LYS LYS A . n C 3 222 ALA 222 222 222 ALA ALA A . n C 3 223 LYS 223 223 223 LYS LYS A . n C 3 224 TYR 224 224 224 TYR TYR A . n C 3 225 LEU 225 225 225 LEU LEU A . n C 3 226 ILE 226 226 226 ILE ILE A . n C 3 227 SER 227 227 227 SER SER A . n C 3 228 LEU 228 228 228 LEU LEU A . n C 3 229 ALA 229 229 229 ALA ALA A . n C 3 230 ARG 230 230 230 ARG ARG A . n C 3 231 ASP 231 231 231 ASP ASP A . n C 3 232 GLU 232 232 232 GLU GLU A . n C 3 233 TYR 233 233 233 TYR TYR A . n C 3 234 ASN 234 234 234 ASN ASN A . n C 3 235 GLU 235 235 235 GLU GLU A . n C 3 236 PRO 236 236 236 PRO PRO A . n C 3 237 ILE 237 237 237 ILE ILE A . n C 3 238 ARG 238 238 238 ARG ARG A . n C 3 239 THR 239 239 239 THR THR A . n C 3 240 ARG 240 240 240 ARG ARG A . n C 3 241 VAL 241 241 241 VAL VAL A . n C 3 242 ARG 242 242 242 ARG ARG A . n C 3 243 LYS 243 243 243 LYS LYS A . n C 3 244 SER 244 244 244 SER SER A . n C 3 245 ILE 245 245 245 ILE ILE A . n C 3 246 GLY 246 246 246 GLY GLY A . n C 3 247 ARG 247 247 247 ARG ARG A . n C 3 248 ILE 248 248 248 ILE ILE A . n C 3 249 VAL 249 249 249 VAL VAL A . n C 3 250 THR 250 250 250 THR THR A . n C 3 251 MET 251 251 251 MET MET A . n C 3 252 LYS 252 252 252 LYS LYS A . n C 3 253 ARG 253 253 253 ARG ARG A . n C 3 254 ASN 254 254 254 ASN ASN A . n C 3 255 SER 255 255 255 SER SER A . n C 3 256 ARG 256 256 256 ARG ARG A . n C 3 257 ASN 257 257 257 ASN ASN A . n C 3 258 LEU 258 258 258 LEU LEU A . n C 3 259 GLU 259 259 259 GLU GLU A . n C 3 260 GLU 260 260 260 GLU GLU A . n C 3 261 ILE 261 261 261 ILE ILE A . n C 3 262 LYS 262 262 262 LYS LYS A . n C 3 263 PRO 263 263 263 PRO PRO A . n C 3 264 TYR 264 264 264 TYR TYR A . n C 3 265 LEU 265 265 265 LEU LEU A . n C 3 266 PHE 266 266 266 PHE PHE A . n C 3 267 ARG 267 267 267 ARG ARG A . n C 3 268 ALA 268 268 268 ALA ALA A . n C 3 269 ILE 269 269 269 ILE ILE A . n C 3 270 GLU 270 270 270 GLU GLU A . n C 3 271 GLU 271 271 271 GLU GLU A . n C 3 272 SER 272 272 272 SER SER A . n C 3 273 TYR 273 273 273 TYR TYR A . n C 3 274 TYR 274 274 274 TYR TYR A . n C 3 275 LYS 275 275 275 LYS LYS A . n C 3 276 LEU 276 276 276 LEU LEU A . n C 3 277 ASP 277 277 277 ASP ASP A . n C 3 278 LYS 278 278 278 LYS LYS A . n C 3 279 ARG 279 279 279 ARG ARG A . n C 3 280 ILE 280 280 280 ILE ILE A . n C 3 281 PRO 281 281 281 PRO PRO A . n C 3 282 LYS 282 282 282 LYS LYS A . n C 3 283 ALA 283 283 283 ALA ALA A . n C 3 284 ILE 284 284 284 ILE ILE A . n C 3 285 HIS 285 285 285 HIS HIS A . n C 3 286 VAL 286 286 286 VAL VAL A . n C 3 287 VAL 287 287 287 VAL VAL A . n C 3 288 ALA 288 288 288 ALA ALA A . n C 3 289 VAL 289 289 289 VAL VAL A . n C 3 290 THR 290 290 290 THR THR A . n C 3 291 GLU 291 291 291 GLU GLU A . n C 3 292 ASP 292 292 292 ASP ASP A . n C 3 293 LEU 293 293 293 LEU LEU A . n C 3 294 ASP 294 294 294 ASP ASP A . n C 3 295 ILE 295 295 295 ILE ILE A . n C 3 296 VAL 296 296 296 VAL VAL A . n C 3 297 SER 297 297 297 SER SER A . n C 3 298 ARG 298 298 298 ARG ARG A . n C 3 299 GLY 299 299 299 GLY GLY A . n C 3 300 ARG 300 300 300 ARG ARG A . n C 3 301 THR 301 301 301 THR THR A . n C 3 302 PHE 302 302 302 PHE PHE A . n C 3 303 PRO 303 303 303 PRO PRO A . n C 3 304 HIS 304 304 304 HIS HIS A . n C 3 305 GLY 305 305 305 GLY GLY A . n C 3 306 ILE 306 306 306 ILE ILE A . n C 3 307 SER 307 307 307 SER SER A . n C 3 308 LYS 308 308 308 LYS LYS A . n C 3 309 GLU 309 309 309 GLU GLU A . n C 3 310 THR 310 310 310 THR THR A . n C 3 311 ALA 311 311 311 ALA ALA A . n C 3 312 TYR 312 312 312 TYR TYR A . n C 3 313 SER 313 313 313 SER SER A . n C 3 314 GLU 314 314 314 GLU GLU A . n C 3 315 SER 315 315 315 SER SER A . n C 3 316 VAL 316 316 316 VAL VAL A . n C 3 317 LYS 317 317 317 LYS LYS A . n C 3 318 LEU 318 318 318 LEU LEU A . n C 3 319 LEU 319 319 319 LEU LEU A . n C 3 320 GLN 320 320 320 GLN GLN A . n C 3 321 LYS 321 321 321 LYS LYS A . n C 3 322 ILE 322 322 322 ILE ILE A . n C 3 323 LEU 323 323 323 LEU LEU A . n C 3 324 GLU 324 324 324 GLU GLU A . n C 3 325 GLU 325 325 325 GLU GLU A . n C 3 326 ASP 326 326 326 ASP ASP A . n C 3 327 GLU 327 327 327 GLU GLU A . n C 3 328 ARG 328 328 328 ARG ARG A . n C 3 329 LYS 329 329 329 LYS LYS A . n C 3 330 ILE 330 330 330 ILE ILE A . n C 3 331 ARG 331 331 331 ARG ARG A . n C 3 332 ARG 332 332 332 ARG ARG A . n C 3 333 ILE 333 333 333 ILE ILE A . n C 3 334 GLY 334 334 334 GLY GLY A . n C 3 335 VAL 335 335 335 VAL VAL A . n C 3 336 ARG 336 336 336 ARG ARG A . n C 3 337 PHE 337 337 337 PHE PHE A . n C 3 338 SER 338 338 338 SER SER A . n C 3 339 LYS 339 339 339 LYS LYS A . n C 3 340 PHE 340 340 340 PHE PHE A . n C 3 341 ILE 341 341 341 ILE ILE A . n C 3 342 GLU 342 342 ? ? ? A . n C 3 343 ALA 343 343 ? ? ? A . n C 3 344 ILE 344 344 ? ? ? A . n C 3 345 GLY 345 345 ? ? ? A . n C 3 346 LEU 346 346 ? ? ? A . n C 3 347 ASP 347 347 ? ? ? A . n C 3 348 LYS 348 348 ? ? ? A . n C 3 349 PHE 349 349 ? ? ? A . n C 3 350 PHE 350 350 ? ? ? A . n C 3 351 ASP 351 351 ? ? ? A . n C 3 352 THR 352 352 ? ? ? A . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id P _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id T _pdbx_struct_mod_residue.auth_comp_id P _pdbx_struct_mod_residue.auth_seq_id 605 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6180 ? 1 MORE -70 ? 1 'SSA (A^2)' 19870 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O ? C PHE 8 ? A PHE 8 ? 1_555 117.9 ? 2 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 87.8 ? 3 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 78.9 ? 4 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O3G ? G DGT . ? A DGT 7000 ? 1_555 143.3 ? 5 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O3G ? G DGT . ? A DGT 7000 ? 1_555 72.7 ? 6 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O3G ? G DGT . ? A DGT 7000 ? 1_555 128.7 ? 7 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2G ? G DGT . ? A DGT 7000 ? 1_555 102.0 ? 8 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2G ? G DGT . ? A DGT 7000 ? 1_555 132.3 ? 9 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2G ? G DGT . ? A DGT 7000 ? 1_555 130.3 ? 10 O3G ? G DGT . ? A DGT 7000 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2G ? G DGT . ? A DGT 7000 ? 1_555 59.6 ? 11 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2B ? G DGT . ? A DGT 7000 ? 1_555 156.9 ? 12 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2B ? G DGT . ? A DGT 7000 ? 1_555 77.3 ? 13 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2B ? G DGT . ? A DGT 7000 ? 1_555 77.8 ? 14 O3G ? G DGT . ? A DGT 7000 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2B ? G DGT . ? A DGT 7000 ? 1_555 54.9 ? 15 O2G ? G DGT . ? A DGT 7000 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2B ? G DGT . ? A DGT 7000 ? 1_555 75.0 ? 16 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2A ? G DGT . ? A DGT 7000 ? 1_555 93.5 ? 17 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2A ? G DGT . ? A DGT 7000 ? 1_555 134.4 ? 18 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2A ? G DGT . ? A DGT 7000 ? 1_555 69.5 ? 19 O3G ? G DGT . ? A DGT 7000 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2A ? G DGT . ? A DGT 7000 ? 1_555 102.3 ? 20 O2G ? G DGT . ? A DGT 7000 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2A ? G DGT . ? A DGT 7000 ? 1_555 61.4 ? 21 O2B ? G DGT . ? A DGT 7000 ? 1_555 CA ? E CA . ? A CA 8002 ? 1_555 O2A ? G DGT . ? A DGT 7000 ? 1_555 64.7 ? 22 O ? C ALA 181 ? A ALA 181 ? 1_555 CA ? D CA . ? A CA 8001 ? 1_555 O ? C ILE 186 ? A ILE 186 ? 1_555 86.2 ? 23 O ? C ALA 181 ? A ALA 181 ? 1_555 CA ? D CA . ? A CA 8001 ? 1_555 O ? J HOH . ? A HOH 9208 ? 1_555 68.4 ? 24 O ? C ILE 186 ? A ILE 186 ? 1_555 CA ? D CA . ? A CA 8001 ? 1_555 O ? J HOH . ? A HOH 9208 ? 1_555 129.1 ? 25 O ? C ALA 181 ? A ALA 181 ? 1_555 CA ? D CA . ? A CA 8001 ? 1_555 O ? J HOH . ? A HOH 9083 ? 1_555 55.9 ? 26 O ? C ILE 186 ? A ILE 186 ? 1_555 CA ? D CA . ? A CA 8001 ? 1_555 O ? J HOH . ? A HOH 9083 ? 1_555 70.9 ? 27 O ? J HOH . ? A HOH 9208 ? 1_555 CA ? D CA . ? A CA 8001 ? 1_555 O ? J HOH . ? A HOH 9083 ? 1_555 58.3 ? 28 O ? C ALA 181 ? A ALA 181 ? 1_555 CA ? D CA . ? A CA 8001 ? 1_555 O ? H HOH . ? P HOH 9610 ? 1_555 114.5 ? 29 O ? C ILE 186 ? A ILE 186 ? 1_555 CA ? D CA . ? A CA 8001 ? 1_555 O ? H HOH . ? P HOH 9610 ? 1_555 88.3 ? 30 O ? J HOH . ? A HOH 9208 ? 1_555 CA ? D CA . ? A CA 8001 ? 1_555 O ? H HOH . ? P HOH 9610 ? 1_555 65.9 ? 31 O ? J HOH . ? A HOH 9083 ? 1_555 CA ? D CA . ? A CA 8001 ? 1_555 O ? H HOH . ? P HOH 9610 ? 1_555 60.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-22 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASN 254 ? ? O A HOH 8809 ? ? 2.17 2 1 OP2 T DA 608 ? ? O T HOH 8607 ? ? 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 T _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 601 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 T _pdbx_validate_rmsd_bond.auth_comp_id_2 DC _pdbx_validate_rmsd_bond.auth_seq_id_2 602 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.524 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.083 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 10 ? ? 26.43 51.38 2 1 ASN A 20 ? ? -150.07 76.54 3 1 PHE A 37 ? ? -127.22 -140.02 4 1 GLU A 94 ? ? -76.00 29.89 5 1 TYR A 95 ? ? -149.00 -3.62 6 1 SER A 96 ? ? 172.87 160.92 7 1 ASP A 105 ? ? -151.82 29.70 8 1 ASP A 113 ? ? -71.04 -78.89 9 1 LYS A 114 ? ? -48.87 12.05 10 1 VAL A 115 ? ? -148.11 -159.74 11 1 ARG A 116 ? ? -177.34 -12.28 12 1 ASN A 161 ? ? 30.69 61.61 13 1 ASP A 167 ? ? -64.98 -118.72 14 1 ASP A 168 ? ? -132.18 -39.39 15 1 LYS A 196 ? ? -64.81 1.03 16 1 GLU A 232 ? ? -143.10 35.32 17 1 ASN A 234 ? ? -145.49 29.31 18 1 ASP A 277 ? ? 27.64 86.88 19 1 LYS A 278 ? ? 84.16 -21.52 20 1 GLU A 325 ? ? -72.58 -90.86 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 T DT 601 ? "O5'" ? B DT 1 "O5'" 2 1 Y 1 T DT 601 ? "C5'" ? B DT 1 "C5'" 3 1 Y 1 T DT 601 ? "C4'" ? B DT 1 "C4'" 4 1 Y 1 T DT 601 ? "O4'" ? B DT 1 "O4'" 5 1 Y 1 T DT 601 ? "C3'" ? B DT 1 "C3'" 6 1 Y 1 T DT 601 ? "C2'" ? B DT 1 "C2'" 7 1 Y 1 T DT 601 ? "C1'" ? B DT 1 "C1'" 8 1 Y 1 T DT 601 ? N1 ? B DT 1 N1 9 1 Y 1 T DT 601 ? C2 ? B DT 1 C2 10 1 Y 1 T DT 601 ? O2 ? B DT 1 O2 11 1 Y 1 T DT 601 ? N3 ? B DT 1 N3 12 1 Y 1 T DT 601 ? C4 ? B DT 1 C4 13 1 Y 1 T DT 601 ? O4 ? B DT 1 O4 14 1 Y 1 T DT 601 ? C5 ? B DT 1 C5 15 1 Y 1 T DT 601 ? C7 ? B DT 1 C7 16 1 Y 1 T DT 601 ? C6 ? B DT 1 C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 T DG 605 A B DG 6 2 1 Y 1 A GLU 342 ? C GLU 342 3 1 Y 1 A ALA 343 ? C ALA 343 4 1 Y 1 A ILE 344 ? C ILE 344 5 1 Y 1 A GLY 345 ? C GLY 345 6 1 Y 1 A LEU 346 ? C LEU 346 7 1 Y 1 A ASP 347 ? C ASP 347 8 1 Y 1 A LYS 348 ? C LYS 348 9 1 Y 1 A PHE 349 ? C PHE 349 10 1 Y 1 A PHE 350 ? C PHE 350 11 1 Y 1 A ASP 351 ? C ASP 351 12 1 Y 1 A THR 352 ? C THR 352 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2R8G 'double helix' 2R8G 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 19 1_555 -0.404 -0.254 -0.362 -7.829 -7.714 2.240 1 P_DG501:DC618_T P 501 ? T 618 ? 19 1 1 A DG 2 1_555 B DC 18 1_555 -0.233 -0.074 -0.180 -1.776 0.390 5.236 2 P_DG502:DC617_T P 502 ? T 617 ? 19 1 1 A DG 3 1_555 B DC 17 1_555 -0.122 -0.302 -0.089 -1.137 -8.796 -5.957 3 P_DG503:DC616_T P 503 ? T 616 ? 19 1 1 A DG 4 1_555 B DC 16 1_555 -0.332 -0.253 0.076 12.454 -4.740 2.806 4 P_DG504:DC615_T P 504 ? T 615 ? 19 1 1 A DG 5 1_555 B DC 15 1_555 -0.070 0.082 0.064 2.278 -2.689 0.430 5 P_DG505:DC614_T P 505 ? T 614 ? 19 1 1 A DA 6 1_555 B DT 14 1_555 0.828 -0.225 0.054 4.383 -9.944 6.664 6 P_DA506:DT613_T P 506 ? T 613 ? 20 1 1 A DA 7 1_555 B DT 13 1_555 0.549 -0.068 -0.042 3.672 -8.894 -2.188 7 P_DA507:DT612_T P 507 ? T 612 ? 20 1 1 A DG 8 1_555 B DC 12 1_555 0.408 -0.263 0.070 4.501 -5.170 -0.052 8 P_DG508:DC611_T P 508 ? T 611 ? 19 1 1 A DG 9 1_555 B DC 11 1_555 -0.604 -0.166 -0.314 -10.643 -10.129 7.516 9 P_DG509:DC610_T P 509 ? T 610 ? 19 1 1 A DA 10 1_555 B DT 10 1_555 0.171 -0.053 -0.286 -11.648 -11.096 2.293 10 P_DA510:DT609_T P 510 ? T 609 ? 20 1 1 A DT 11 1_555 B DA 9 1_555 -0.138 -0.144 -0.289 2.304 -3.813 0.318 11 P_DT511:DA608_T P 511 ? T 608 ? 20 1 1 A DT 12 1_555 B DA 8 1_555 -0.201 -0.120 -0.389 5.634 -1.234 -3.311 12 P_DT512:DA607_T P 512 ? T 607 ? 20 1 1 A DT 13 1_555 B DA 7 1_555 -0.137 -0.156 -0.935 22.327 -5.276 -0.682 13 P_DT513:DA606_T P 513 ? T 606 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 19 1_555 A DG 2 1_555 B DC 18 1_555 0.971 0.190 3.194 -0.094 2.530 33.600 -0.075 -1.690 3.197 4.368 0.162 33.692 1 PP_DG501DG502:DC617DC618_TT P 501 ? T 618 ? P 502 ? T 617 ? 1 A DG 2 1_555 B DC 18 1_555 A DG 3 1_555 B DC 17 1_555 -1.922 -0.338 3.335 -4.412 8.142 31.157 -2.101 2.626 3.376 14.754 7.995 32.471 2 PP_DG502DG503:DC616DC617_TT P 502 ? T 617 ? P 503 ? T 616 ? 1 A DG 3 1_555 B DC 17 1_555 A DG 4 1_555 B DC 16 1_555 1.133 -0.133 3.042 -0.587 7.451 28.301 -1.753 -2.361 2.890 14.912 1.175 29.252 3 PP_DG503DG504:DC615DC616_TT P 503 ? T 616 ? P 504 ? T 615 ? 1 A DG 4 1_555 B DC 16 1_555 A DG 5 1_555 B DC 15 1_555 -0.551 -0.351 3.476 -2.094 8.967 33.101 -2.078 0.587 3.299 15.372 3.590 34.323 4 PP_DG504DG505:DC614DC615_TT P 504 ? T 615 ? P 505 ? T 614 ? 1 A DG 5 1_555 B DC 15 1_555 A DA 6 1_555 B DT 14 1_555 -0.158 -0.620 3.235 0.366 6.275 38.992 -1.638 0.276 3.100 9.326 -0.543 39.476 5 PP_DG505DA506:DT613DC614_TT P 505 ? T 614 ? P 506 ? T 613 ? 1 A DA 6 1_555 B DT 14 1_555 A DA 7 1_555 B DT 13 1_555 -0.594 -0.529 3.269 -0.748 2.342 26.629 -1.748 1.091 3.226 5.071 1.619 26.740 6 PP_DA506DA507:DT612DT613_TT P 506 ? T 613 ? P 507 ? T 612 ? 1 A DA 7 1_555 B DT 13 1_555 A DG 8 1_555 B DC 12 1_555 -0.016 0.075 3.300 -1.084 6.689 34.750 -0.873 -0.135 3.257 11.070 1.794 35.384 7 PP_DA507DG508:DC611DT612_TT P 507 ? T 612 ? P 508 ? T 611 ? 1 A DG 8 1_555 B DC 12 1_555 A DG 9 1_555 B DC 11 1_555 0.473 -1.283 3.736 1.681 5.709 27.398 -4.143 -0.537 3.426 11.877 -3.497 28.025 8 PP_DG508DG509:DC610DC611_TT P 508 ? T 611 ? P 509 ? T 610 ? 1 A DG 9 1_555 B DC 11 1_555 A DA 10 1_555 B DT 10 1_555 -0.600 -0.123 3.380 -0.520 -0.425 40.375 -0.128 0.809 3.388 -0.616 0.753 40.380 9 PP_DG509DA510:DT609DC610_TT P 509 ? T 610 ? P 510 ? T 609 ? 1 A DA 10 1_555 B DT 10 1_555 A DT 11 1_555 B DA 9 1_555 -0.063 -0.474 3.059 -0.531 4.208 25.164 -2.184 0.002 2.942 9.571 1.207 25.513 10 PP_DA510DT511:DA608DT609_TT P 510 ? T 609 ? P 511 ? T 608 ? 1 A DT 11 1_555 B DA 9 1_555 A DT 12 1_555 B DA 8 1_555 0.332 -0.505 3.261 1.538 2.191 35.132 -1.158 -0.321 3.236 3.623 -2.544 35.231 11 PP_DT511DT512:DA607DA608_TT P 511 ? T 608 ? P 512 ? T 607 ? 1 A DT 12 1_555 B DA 8 1_555 A DT 13 1_555 B DA 7 1_555 0.206 -0.054 2.932 5.047 5.713 27.237 -1.306 0.635 2.853 11.840 -10.461 28.265 12 PP_DT512DT513:DA606DA607_TT P 512 ? T 607 ? P 513 ? T 606 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'CALCIUM ION' CA 5 "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" DGT 6 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA 1 8001 8001 CA CA A . E 4 CA 1 8002 8002 CA CA A . F 4 CA 1 8003 8003 CA CA A . G 5 DGT 1 7000 7000 DGT DGT A . H 6 HOH 1 8605 8605 HOH HOH P . H 6 HOH 2 8606 8606 HOH HOH P . H 6 HOH 3 8808 8808 HOH HOH P . H 6 HOH 4 9002 9002 HOH HOH P . H 6 HOH 5 9007 9007 HOH HOH P . H 6 HOH 6 9008 9008 HOH HOH P . H 6 HOH 7 9009 9009 HOH HOH P . H 6 HOH 8 9011 9011 HOH HOH P . H 6 HOH 9 9018 9018 HOH HOH P . H 6 HOH 10 9047 9047 HOH HOH P . H 6 HOH 11 9049 9049 HOH HOH P . H 6 HOH 12 9050 9050 HOH HOH P . H 6 HOH 13 9051 9051 HOH HOH P . H 6 HOH 14 9052 9052 HOH HOH P . H 6 HOH 15 9071 9071 HOH HOH P . H 6 HOH 16 9072 9072 HOH HOH P . H 6 HOH 17 9088 9088 HOH HOH P . H 6 HOH 18 9090 9090 HOH HOH P . H 6 HOH 19 9092 9092 HOH HOH P . H 6 HOH 20 9093 9093 HOH HOH P . H 6 HOH 21 9101 9101 HOH HOH P . H 6 HOH 22 9102 9102 HOH HOH P . H 6 HOH 23 9106 9106 HOH HOH P . H 6 HOH 24 9107 9107 HOH HOH P . H 6 HOH 25 9145 9145 HOH HOH P . H 6 HOH 26 9303 9303 HOH HOH P . H 6 HOH 27 9304 9304 HOH HOH P . H 6 HOH 28 9601 9601 HOH HOH P . H 6 HOH 29 9602 9602 HOH HOH P . H 6 HOH 30 9603 9603 HOH HOH P . H 6 HOH 31 9610 9610 HOH HOH P . I 6 HOH 1 8607 8607 HOH HOH T . I 6 HOH 2 8614 8614 HOH HOH T . I 6 HOH 3 8615 8615 HOH HOH T . I 6 HOH 4 8616 8616 HOH HOH T . I 6 HOH 5 9004 9004 HOH HOH T . I 6 HOH 6 9006 9006 HOH HOH T . I 6 HOH 7 9012 9012 HOH HOH T . I 6 HOH 8 9013 9013 HOH HOH T . I 6 HOH 9 9026 9026 HOH HOH T . I 6 HOH 10 9027 9027 HOH HOH T . I 6 HOH 11 9031 9031 HOH HOH T . I 6 HOH 12 9038 9038 HOH HOH T . I 6 HOH 13 9128 9128 HOH HOH T . I 6 HOH 14 9607 9607 HOH HOH T . I 6 HOH 15 9608 9608 HOH HOH T . I 6 HOH 16 9611 9611 HOH HOH T . I 6 HOH 17 9619 9619 HOH HOH T . I 6 HOH 18 9701 9701 HOH HOH T . J 6 HOH 1 8601 8601 HOH HOH A . J 6 HOH 2 8602 8602 HOH HOH A . J 6 HOH 3 8603 8603 HOH HOH A . J 6 HOH 4 8608 8608 HOH HOH A . J 6 HOH 5 8611 8611 HOH HOH A . J 6 HOH 6 8612 8612 HOH HOH A . J 6 HOH 7 8617 8617 HOH HOH A . J 6 HOH 8 8618 8618 HOH HOH A . J 6 HOH 9 8619 8619 HOH HOH A . J 6 HOH 10 8620 8620 HOH HOH A . J 6 HOH 11 8622 8622 HOH HOH A . J 6 HOH 12 8801 8801 HOH HOH A . J 6 HOH 13 8802 8802 HOH HOH A . J 6 HOH 14 8803 8803 HOH HOH A . J 6 HOH 15 8804 8804 HOH HOH A . J 6 HOH 16 8805 8805 HOH HOH A . J 6 HOH 17 8806 8806 HOH HOH A . J 6 HOH 18 8807 8807 HOH HOH A . J 6 HOH 19 8809 8809 HOH HOH A . J 6 HOH 20 8810 8810 HOH HOH A . J 6 HOH 21 8811 8811 HOH HOH A . J 6 HOH 22 8812 8812 HOH HOH A . J 6 HOH 23 8814 8814 HOH HOH A . J 6 HOH 24 8815 8815 HOH HOH A . J 6 HOH 25 9005 9005 HOH HOH A . J 6 HOH 26 9021 9021 HOH HOH A . J 6 HOH 27 9025 9025 HOH HOH A . J 6 HOH 28 9028 9028 HOH HOH A . J 6 HOH 29 9029 9029 HOH HOH A . J 6 HOH 30 9033 9033 HOH HOH A . J 6 HOH 31 9044 9044 HOH HOH A . J 6 HOH 32 9054 9054 HOH HOH A . J 6 HOH 33 9057 9057 HOH HOH A . J 6 HOH 34 9058 9058 HOH HOH A . J 6 HOH 35 9059 9059 HOH HOH A . J 6 HOH 36 9063 9063 HOH HOH A . J 6 HOH 37 9064 9064 HOH HOH A . J 6 HOH 38 9066 9066 HOH HOH A . J 6 HOH 39 9067 9067 HOH HOH A . J 6 HOH 40 9070 9070 HOH HOH A . J 6 HOH 41 9078 9078 HOH HOH A . J 6 HOH 42 9083 9083 HOH HOH A . J 6 HOH 43 9084 9084 HOH HOH A . J 6 HOH 44 9086 9086 HOH HOH A . J 6 HOH 45 9087 9087 HOH HOH A . J 6 HOH 46 9112 9112 HOH HOH A . J 6 HOH 47 9114 9114 HOH HOH A . J 6 HOH 48 9115 9115 HOH HOH A . J 6 HOH 49 9116 9116 HOH HOH A . J 6 HOH 50 9125 9125 HOH HOH A . J 6 HOH 51 9131 9131 HOH HOH A . J 6 HOH 52 9132 9132 HOH HOH A . J 6 HOH 53 9139 9139 HOH HOH A . J 6 HOH 54 9146 9146 HOH HOH A . J 6 HOH 55 9153 9153 HOH HOH A . J 6 HOH 56 9202 9202 HOH HOH A . J 6 HOH 57 9208 9208 HOH HOH A . J 6 HOH 58 9307 9307 HOH HOH A . J 6 HOH 59 9309 9309 HOH HOH A . J 6 HOH 60 9310 9310 HOH HOH A . J 6 HOH 61 9406 9406 HOH HOH A . J 6 HOH 62 9407 9407 HOH HOH A . J 6 HOH 63 9609 9609 HOH HOH A . J 6 HOH 64 9627 9627 HOH HOH A . J 6 HOH 65 9709 9709 HOH HOH A . J 6 HOH 66 9712 9712 HOH HOH A . J 6 HOH 67 9716 9716 HOH HOH A . #