HEADER REPLICATION, TRANSFERASE/DNA 11-SEP-07 2R8J TITLE STRUCTURE OF THE EUKARYOTIC DNA POLYMERASE ETA IN COMPLEX WITH 1,2- TITLE 2 D(GPG)-CISPLATIN CONTAINING DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*DGP*DTP*DGP*DGP*DAP*DTP*DGP*DAP*DG)-3'); COMPND 3 CHAIN: Q, P; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SYN; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*DGP*DGP*DCP*DTP*DCP*DAP*DTP*DCP*DCP*DAP*DC)- COMPND 8 3'); COMPND 9 CHAIN: U, T; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: SYN; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA POLYMERASE ETA; COMPND 14 CHAIN: A, B; COMPND 15 FRAGMENT: CATALYTIC DOMAIN; COMPND 16 SYNONYM: RADIATION SENSITIVE PROTEIN 30; COMPND 17 EC: 2.7.7.7; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: MAN SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 STRAIN: YPH499 (ATCC 76625); SOURCE 10 GENE: RAD30, DBH1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 ROSETTA; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PEXP007 KEYWDS PROTEIN-CISPLATIN-DNA-DNTP COMPLEX, REPLICATION, TRANSFERASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.CARELL,A.ALT,K.LAMMENS REVDAT 5 30-AUG-23 2R8J 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2R8J 1 VERSN REVDAT 3 23-JUN-10 2R8J 1 HET REVDAT 2 24-FEB-09 2R8J 1 VERSN REVDAT 1 11-DEC-07 2R8J 0 JRNL AUTH A.ALT,K.LAMMENS,C.CHIOCCHINI,A.LAMMENS,J.C.PIECK,D.KUCH, JRNL AUTH 2 K.P.HOPFNER,T.CARELL JRNL TITL BYPASS OF DNA LESIONS GENERATED DURING ANTICANCER TREATMENT JRNL TITL 2 WITH CISPLATIN BY DNA POLYMERASE ETA JRNL REF SCIENCE V. 318 967 2007 JRNL REFN ISSN 0036-8075 JRNL PMID 17991862 JRNL DOI 10.1126/SCIENCE.1148242 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 30031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 12.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2412 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8103 REMARK 3 NUCLEIC ACID ATOMS : 818 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 1.203 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.344 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.372 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.920 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.150 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2R8J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30191 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15400 REMARK 200 FOR THE DATA SET : 16.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44300 REMARK 200 FOR SHELL : 5.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1JIH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 170 MM CALCIUM CHLORIDE, 16% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.52500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.04500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.26250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.04500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 219.78750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.04500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.04500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.26250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.04500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.04500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 219.78750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 146.52500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: Q, U, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, T, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 ALA A -21 REMARK 465 SER A -20 REMARK 465 TRP A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 PRO A -16 REMARK 465 GLN A -15 REMARK 465 PHE A -14 REMARK 465 GLU A -13 REMARK 465 LYS A -12 REMARK 465 GLY A -11 REMARK 465 ALA A -10 REMARK 465 SER A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 ALA A -2 REMARK 465 ASP A 510 REMARK 465 LEU A 511 REMARK 465 GLN A 512 REMARK 465 LYS A 513 REMARK 465 THR A 514 REMARK 465 VAL A 515 REMARK 465 VAL A 516 REMARK 465 ASP A 517 REMARK 465 MET A 518 REMARK 465 PHE A 519 REMARK 465 GLY A 520 REMARK 465 ASN A 521 REMARK 465 GLN A 522 REMARK 465 VAL A 523 REMARK 465 HIS A 524 REMARK 465 THR A 525 REMARK 465 PHE A 526 REMARK 465 LYS A 527 REMARK 465 SER A 528 REMARK 465 SER A 529 REMARK 465 ALA A 530 REMARK 465 GLY A 531 REMARK 465 MET B -22 REMARK 465 ALA B -21 REMARK 465 SER B -20 REMARK 465 TRP B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 PRO B -16 REMARK 465 GLN B -15 REMARK 465 PHE B -14 REMARK 465 GLU B -13 REMARK 465 LYS B -12 REMARK 465 GLY B -11 REMARK 465 ALA B -10 REMARK 465 SER B -9 REMARK 465 THR B -8 REMARK 465 SER B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 LYS B -4 REMARK 465 LYS B -3 REMARK 465 ALA B -2 REMARK 465 GLY B -1 REMARK 465 ARG B 0 REMARK 465 ASP B 510 REMARK 465 LEU B 511 REMARK 465 GLN B 512 REMARK 465 LYS B 513 REMARK 465 THR B 514 REMARK 465 VAL B 515 REMARK 465 VAL B 516 REMARK 465 ASP B 517 REMARK 465 MET B 518 REMARK 465 PHE B 519 REMARK 465 GLY B 520 REMARK 465 ASN B 521 REMARK 465 GLN B 522 REMARK 465 VAL B 523 REMARK 465 HIS B 524 REMARK 465 THR B 525 REMARK 465 PHE B 526 REMARK 465 LYS B 527 REMARK 465 SER B 528 REMARK 465 SER B 529 REMARK 465 ALA B 530 REMARK 465 GLY B 531 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG Q 13 O3' REMARK 470 DG P 13 O3' REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 LYS A 464 REMARK 475 GLY A 465 REMARK 475 ILE A 466 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 0 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU A 20 CG CD OE1 OE2 REMARK 480 ILE A 77 CD1 REMARK 480 GLU A 122 CG CD OE1 OE2 REMARK 480 ASP A 180 CG OD1 OD2 REMARK 480 LYS A 182 CG CD CE NZ REMARK 480 GLU A 192 CD OE1 OE2 REMARK 480 ASP A 200 CG OD1 OD2 REMARK 480 ASP A 318 CG OD1 OD2 REMARK 480 LYS A 343 CD CE NZ REMARK 480 ASP A 354 CB CG OD1 OD2 REMARK 480 TYR A 355 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR A 355 OH REMARK 480 ARG A 357 CD NE CZ NH1 NH2 REMARK 480 THR A 359 CB OG1 CG2 REMARK 480 ASP A 363 CB CG OD1 OD2 REMARK 480 GLU A 372 CB CG CD OE1 OE2 REMARK 480 ARG A 389 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 393 CE NZ REMARK 480 ARG A 402 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 428 CG CD OE1 NE2 REMARK 480 LYS A 436 CG CD CE NZ REMARK 480 GLN A 469 CD OE1 NE2 REMARK 480 SER A 470 CB OG REMARK 480 LYS B 17 CG CD CE NZ REMARK 480 LYS B 47 CG CD CE NZ REMARK 480 SER B 72 OG REMARK 480 ILE B 77 CD1 REMARK 480 LYS B 82 CG CD CE NZ REMARK 480 SER B 110 OG REMARK 480 LYS B 117 NZ REMARK 480 LYS B 143 CE NZ REMARK 480 GLU B 174 OE2 REMARK 480 ASP B 180 CG OD1 OD2 REMARK 480 LYS B 182 CG CD CE NZ REMARK 480 LYS B 211 CE NZ REMARK 480 LYS B 278 CE NZ REMARK 480 GLU B 344 CG CD OE1 OE2 REMARK 480 LEU B 346 CG CD1 CD2 REMARK 480 SER B 353 CB OG REMARK 480 ASP B 354 CB CG OD1 OD2 REMARK 480 ASP B 356 CB CG OD1 OD2 REMARK 480 THR B 359 OG1 CG2 REMARK 480 LYS B 366 NZ REMARK 480 GLU B 372 CG CD OE1 OE2 REMARK 480 ARG B 402 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 464 CB CG CD CE NZ REMARK 480 ILE B 466 CD1 REMARK 480 ASN B 467 CG OD1 ND2 REMARK 480 PHE B 468 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 SER B 470 CB OG REMARK 480 LYS B 479 CD CE NZ REMARK 480 LYS B 489 CB CG CD CE NZ REMARK 480 ASN B 490 CB CG OD1 ND2 REMARK 480 LYS B 491 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG U 4 N3 DG U 4 C4 0.044 REMARK 500 DG U 4 N7 DG U 4 C8 -0.059 REMARK 500 DG T 5 O3' DG T 5 C3' 0.079 REMARK 500 DG T 5 N3 DG T 5 C4 0.049 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG U 4 C4' - C3' - C2' ANGL. DEV. = -6.8 DEGREES REMARK 500 DG U 4 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DG U 4 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG U 4 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 DG U 5 N3 - C2 - N2 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG T 4 O4' - C1' - N9 ANGL. DEV. = 7.3 DEGREES REMARK 500 DG T 5 O3' - P - O5' ANGL. DEV. = -24.0 DEGREES REMARK 500 DG T 5 O3' - P - OP1 ANGL. DEV. = 7.5 DEGREES REMARK 500 DG T 5 O5' - P - OP1 ANGL. DEV. = -23.1 DEGREES REMARK 500 DG T 5 O5' - P - OP2 ANGL. DEV. = -18.7 DEGREES REMARK 500 DG T 5 N3 - C2 - N2 ANGL. DEV. = 5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 139.47 179.61 REMARK 500 ALA A 33 57.28 31.15 REMARK 500 PHE A 34 -74.40 -39.51 REMARK 500 TRP A 56 -101.96 67.00 REMARK 500 HIS A 105 60.28 -110.30 REMARK 500 LYS A 117 85.83 -69.56 REMARK 500 ASP A 147 35.23 -89.89 REMARK 500 LEU A 148 100.88 179.05 REMARK 500 THR A 178 -135.49 -152.43 REMARK 500 LEU A 181 117.06 -164.75 REMARK 500 LEU A 187 60.09 -111.37 REMARK 500 PHE A 222 91.72 -56.33 REMARK 500 SER A 265 -174.97 -179.91 REMARK 500 ASP A 281 58.71 37.89 REMARK 500 THR A 307 15.87 56.32 REMARK 500 VAL A 319 -64.88 -90.72 REMARK 500 LEU A 320 4.05 -68.84 REMARK 500 LYS A 351 56.49 -104.24 REMARK 500 SER A 353 47.86 -91.47 REMARK 500 ARG A 357 33.03 -73.81 REMARK 500 SER A 358 -61.61 -123.01 REMARK 500 LEU A 365 3.96 -66.43 REMARK 500 LYS A 404 35.60 -97.77 REMARK 500 SER A 405 -83.10 -56.31 REMARK 500 CYS A 406 80.94 -69.46 REMARK 500 ASN A 467 44.77 37.95 REMARK 500 PHE A 468 83.58 -62.04 REMARK 500 GLN A 469 35.25 -75.01 REMARK 500 SER A 470 10.66 -143.93 REMARK 500 HIS A 471 -61.08 -139.69 REMARK 500 TYR A 493 -88.54 -144.42 REMARK 500 ASN A 505 82.27 48.84 REMARK 500 ILE A 508 47.32 -72.78 REMARK 500 SER B 22 -20.09 84.34 REMARK 500 ALA B 33 59.02 36.93 REMARK 500 PHE B 34 -79.05 -44.84 REMARK 500 TRP B 56 -95.77 63.93 REMARK 500 ASN B 86 31.61 -95.40 REMARK 500 ASP B 100 52.48 -95.94 REMARK 500 SER B 120 108.54 -52.78 REMARK 500 LEU B 148 95.18 -160.69 REMARK 500 SER B 153 -163.72 -179.68 REMARK 500 THR B 178 -107.98 -137.98 REMARK 500 ASP B 180 10.60 -153.63 REMARK 500 LEU B 187 50.81 -118.32 REMARK 500 TYR B 199 139.49 -172.72 REMARK 500 ASN B 223 61.87 -164.90 REMARK 500 SER B 265 -175.86 -175.98 REMARK 500 ASP B 281 -133.10 -81.20 REMARK 500 ALA B 282 152.59 67.53 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT U 45 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG U 4 N7 REMARK 620 2 CPT U 45 N1 89.5 REMARK 620 3 CPT U 45 N2 176.2 89.8 REMARK 620 4 DG U 5 N7 91.9 177.8 88.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT T 45 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG T 4 N7 REMARK 620 2 CPT T 45 N1 89.0 REMARK 620 3 CPT T 45 N2 176.7 90.1 REMARK 620 4 DG T 5 N7 90.0 178.6 91.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD2 REMARK 620 2 GLU A 156 OE1 65.9 REMARK 620 3 DCP A2001 O1A 70.4 94.2 REMARK 620 4 HOH A2004 O 62.5 95.1 122.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD1 REMARK 620 2 MET A 31 O 69.0 REMARK 620 3 ASP A 155 OD1 110.4 83.7 REMARK 620 4 DCP A2001 O2B 144.2 83.3 87.8 REMARK 620 5 DCP A2001 O3G 78.2 71.7 149.2 71.6 REMARK 620 6 DCP A2001 O1A 114.7 171.1 101.8 89.9 100.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 30 OD2 REMARK 620 2 ASP B 155 OD1 66.8 REMARK 620 3 ASP B 155 OD2 101.6 46.8 REMARK 620 4 GLU B 156 OE1 74.4 124.3 109.4 REMARK 620 5 DCP B3001 O1A 87.2 76.3 108.4 140.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 30 OD1 REMARK 620 2 ASP B 30 OD2 48.3 REMARK 620 3 MET B 31 O 61.2 104.7 REMARK 620 4 ASP B 155 OD1 98.1 73.1 96.3 REMARK 620 5 DCP B3001 O1G 71.5 88.9 91.8 161.6 REMARK 620 6 DCP B3001 O1A 127.3 87.6 166.4 92.8 82.4 REMARK 620 7 DCP B3001 O2B 126.7 170.1 75.3 116.8 81.2 91.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT U 45 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT T 45 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP B 3001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JIH RELATED DB: PDB REMARK 900 APOENZYME STRUCTURE REMARK 900 RELATED ID: 2R8K RELATED DB: PDB REMARK 900 DNA POLYMERASE ETA IN COMPLEX WITH 1,2-D(GPG)-CISPLATIN DBREF 2R8J A 1 531 UNP Q04049 POLH_YEAST 1 531 DBREF 2R8J B 1 531 UNP Q04049 POLH_YEAST 1 531 DBREF 2R8J P 5 13 PDB 2R8J 2R8J 5 13 DBREF 2R8J Q 5 13 PDB 2R8J 2R8J 5 13 DBREF 2R8J U 4 14 PDB 2R8J 2R8J 4 14 DBREF 2R8J T 4 14 PDB 2R8J 2R8J 4 14 SEQADV 2R8J MET A -22 UNP Q04049 EXPRESSION TAG SEQADV 2R8J ALA A -21 UNP Q04049 EXPRESSION TAG SEQADV 2R8J SER A -20 UNP Q04049 EXPRESSION TAG SEQADV 2R8J TRP A -19 UNP Q04049 EXPRESSION TAG SEQADV 2R8J SER A -18 UNP Q04049 EXPRESSION TAG SEQADV 2R8J HIS A -17 UNP Q04049 EXPRESSION TAG SEQADV 2R8J PRO A -16 UNP Q04049 EXPRESSION TAG SEQADV 2R8J GLN A -15 UNP Q04049 EXPRESSION TAG SEQADV 2R8J PHE A -14 UNP Q04049 EXPRESSION TAG SEQADV 2R8J GLU A -13 UNP Q04049 EXPRESSION TAG SEQADV 2R8J LYS A -12 UNP Q04049 EXPRESSION TAG SEQADV 2R8J GLY A -11 UNP Q04049 EXPRESSION TAG SEQADV 2R8J ALA A -10 UNP Q04049 EXPRESSION TAG SEQADV 2R8J SER A -9 UNP Q04049 EXPRESSION TAG SEQADV 2R8J THR A -8 UNP Q04049 EXPRESSION TAG SEQADV 2R8J SER A -7 UNP Q04049 EXPRESSION TAG SEQADV 2R8J LEU A -6 UNP Q04049 EXPRESSION TAG SEQADV 2R8J TYR A -5 UNP Q04049 EXPRESSION TAG SEQADV 2R8J LYS A -4 UNP Q04049 EXPRESSION TAG SEQADV 2R8J LYS A -3 UNP Q04049 EXPRESSION TAG SEQADV 2R8J ALA A -2 UNP Q04049 EXPRESSION TAG SEQADV 2R8J GLY A -1 UNP Q04049 EXPRESSION TAG SEQADV 2R8J ARG A 0 UNP Q04049 EXPRESSION TAG SEQADV 2R8J MET B -22 UNP Q04049 EXPRESSION TAG SEQADV 2R8J ALA B -21 UNP Q04049 EXPRESSION TAG SEQADV 2R8J SER B -20 UNP Q04049 EXPRESSION TAG SEQADV 2R8J TRP B -19 UNP Q04049 EXPRESSION TAG SEQADV 2R8J SER B -18 UNP Q04049 EXPRESSION TAG SEQADV 2R8J HIS B -17 UNP Q04049 EXPRESSION TAG SEQADV 2R8J PRO B -16 UNP Q04049 EXPRESSION TAG SEQADV 2R8J GLN B -15 UNP Q04049 EXPRESSION TAG SEQADV 2R8J PHE B -14 UNP Q04049 EXPRESSION TAG SEQADV 2R8J GLU B -13 UNP Q04049 EXPRESSION TAG SEQADV 2R8J LYS B -12 UNP Q04049 EXPRESSION TAG SEQADV 2R8J GLY B -11 UNP Q04049 EXPRESSION TAG SEQADV 2R8J ALA B -10 UNP Q04049 EXPRESSION TAG SEQADV 2R8J SER B -9 UNP Q04049 EXPRESSION TAG SEQADV 2R8J THR B -8 UNP Q04049 EXPRESSION TAG SEQADV 2R8J SER B -7 UNP Q04049 EXPRESSION TAG SEQADV 2R8J LEU B -6 UNP Q04049 EXPRESSION TAG SEQADV 2R8J TYR B -5 UNP Q04049 EXPRESSION TAG SEQADV 2R8J LYS B -4 UNP Q04049 EXPRESSION TAG SEQADV 2R8J LYS B -3 UNP Q04049 EXPRESSION TAG SEQADV 2R8J ALA B -2 UNP Q04049 EXPRESSION TAG SEQADV 2R8J GLY B -1 UNP Q04049 EXPRESSION TAG SEQADV 2R8J ARG B 0 UNP Q04049 EXPRESSION TAG SEQRES 1 Q 9 DG DT DG DG DA DT DG DA DG SEQRES 1 U 11 DG DG DC DT DC DA DT DC DC DA DC SEQRES 1 P 9 DG DT DG DG DA DT DG DA DG SEQRES 1 T 11 DG DG DC DT DC DA DT DC DC DA DC SEQRES 1 A 554 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 554 SER THR SER LEU TYR LYS LYS ALA GLY ARG MET SER LYS SEQRES 3 A 554 PHE THR TRP LYS GLU LEU ILE GLN LEU GLY SER PRO SER SEQRES 4 A 554 LYS ALA TYR GLU SER SER LEU ALA CYS ILE ALA HIS ILE SEQRES 5 A 554 ASP MET ASN ALA PHE PHE ALA GLN VAL GLU GLN MET ARG SEQRES 6 A 554 CYS GLY LEU SER LYS GLU ASP PRO VAL VAL CYS VAL GLN SEQRES 7 A 554 TRP ASN SER ILE ILE ALA VAL SER TYR ALA ALA ARG LYS SEQRES 8 A 554 TYR GLY ILE SER ARG MET ASP THR ILE GLN GLU ALA LEU SEQRES 9 A 554 LYS LYS CYS SER ASN LEU ILE PRO ILE HIS THR ALA VAL SEQRES 10 A 554 PHE LYS LYS GLY GLU ASP PHE TRP GLN TYR HIS ASP GLY SEQRES 11 A 554 CYS GLY SER TRP VAL GLN ASP PRO ALA LYS GLN ILE SER SEQRES 12 A 554 VAL GLU ASP HIS LYS VAL SER LEU GLU PRO TYR ARG ARG SEQRES 13 A 554 GLU SER ARG LYS ALA LEU LYS ILE PHE LYS SER ALA CYS SEQRES 14 A 554 ASP LEU VAL GLU ARG ALA SER ILE ASP GLU VAL PHE LEU SEQRES 15 A 554 ASP LEU GLY ARG ILE CYS PHE ASN MET LEU MET PHE ASP SEQRES 16 A 554 ASN GLU TYR GLU LEU THR GLY ASP LEU LYS LEU LYS ASP SEQRES 17 A 554 ALA LEU SER ASN ILE ARG GLU ALA PHE ILE GLY GLY ASN SEQRES 18 A 554 TYR ASP ILE ASN SER HIS LEU PRO LEU ILE PRO GLU LYS SEQRES 19 A 554 ILE LYS SER LEU LYS PHE GLU GLY ASP VAL PHE ASN PRO SEQRES 20 A 554 GLU GLY ARG ASP LEU ILE THR ASP TRP ASP ASP VAL ILE SEQRES 21 A 554 LEU ALA LEU GLY SER GLN VAL CYS LYS GLY ILE ARG ASP SEQRES 22 A 554 SER ILE LYS ASP ILE LEU GLY TYR THR THR SER CYS GLY SEQRES 23 A 554 LEU SER SER THR LYS ASN VAL CYS LYS LEU ALA SER ASN SEQRES 24 A 554 TYR LYS LYS PRO ASP ALA GLN THR ILE VAL LYS ASN ASP SEQRES 25 A 554 CYS LEU LEU ASP PHE LEU ASP CYS GLY LYS PHE GLU ILE SEQRES 26 A 554 THR SER PHE TRP THR LEU GLY GLY VAL LEU GLY LYS GLU SEQRES 27 A 554 LEU ILE ASP VAL LEU ASP LEU PRO HIS GLU ASN SER ILE SEQRES 28 A 554 LYS HIS ILE ARG GLU THR TRP PRO ASP ASN ALA GLY GLN SEQRES 29 A 554 LEU LYS GLU PHE LEU ASP ALA LYS VAL LYS GLN SER ASP SEQRES 30 A 554 TYR ASP ARG SER THR SER ASN ILE ASP PRO LEU LYS THR SEQRES 31 A 554 ALA ASP LEU ALA GLU LYS LEU PHE LYS LEU SER ARG GLY SEQRES 32 A 554 ARG TYR GLY LEU PRO LEU SER SER ARG PRO VAL VAL LYS SEQRES 33 A 554 SER MET MET SER ASN LYS ASN LEU ARG GLY LYS SER CYS SEQRES 34 A 554 ASN SER ILE VAL ASP CYS ILE SER TRP LEU GLU VAL PHE SEQRES 35 A 554 CYS ALA GLU LEU THR SER ARG ILE GLN ASP LEU GLU GLN SEQRES 36 A 554 GLU TYR ASN LYS ILE VAL ILE PRO ARG THR VAL SER ILE SEQRES 37 A 554 SER LEU LYS THR LYS SER TYR GLU VAL TYR ARG LYS SER SEQRES 38 A 554 GLY PRO VAL ALA TYR LYS GLY ILE ASN PHE GLN SER HIS SEQRES 39 A 554 GLU LEU LEU LYS VAL GLY ILE LYS PHE VAL THR ASP LEU SEQRES 40 A 554 ASP ILE LYS GLY LYS ASN LYS SER TYR TYR PRO LEU THR SEQRES 41 A 554 LYS LEU SER MET THR ILE THR ASN PHE ASP ILE ILE ASP SEQRES 42 A 554 LEU GLN LYS THR VAL VAL ASP MET PHE GLY ASN GLN VAL SEQRES 43 A 554 HIS THR PHE LYS SER SER ALA GLY SEQRES 1 B 554 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 B 554 SER THR SER LEU TYR LYS LYS ALA GLY ARG MET SER LYS SEQRES 3 B 554 PHE THR TRP LYS GLU LEU ILE GLN LEU GLY SER PRO SER SEQRES 4 B 554 LYS ALA TYR GLU SER SER LEU ALA CYS ILE ALA HIS ILE SEQRES 5 B 554 ASP MET ASN ALA PHE PHE ALA GLN VAL GLU GLN MET ARG SEQRES 6 B 554 CYS GLY LEU SER LYS GLU ASP PRO VAL VAL CYS VAL GLN SEQRES 7 B 554 TRP ASN SER ILE ILE ALA VAL SER TYR ALA ALA ARG LYS SEQRES 8 B 554 TYR GLY ILE SER ARG MET ASP THR ILE GLN GLU ALA LEU SEQRES 9 B 554 LYS LYS CYS SER ASN LEU ILE PRO ILE HIS THR ALA VAL SEQRES 10 B 554 PHE LYS LYS GLY GLU ASP PHE TRP GLN TYR HIS ASP GLY SEQRES 11 B 554 CYS GLY SER TRP VAL GLN ASP PRO ALA LYS GLN ILE SER SEQRES 12 B 554 VAL GLU ASP HIS LYS VAL SER LEU GLU PRO TYR ARG ARG SEQRES 13 B 554 GLU SER ARG LYS ALA LEU LYS ILE PHE LYS SER ALA CYS SEQRES 14 B 554 ASP LEU VAL GLU ARG ALA SER ILE ASP GLU VAL PHE LEU SEQRES 15 B 554 ASP LEU GLY ARG ILE CYS PHE ASN MET LEU MET PHE ASP SEQRES 16 B 554 ASN GLU TYR GLU LEU THR GLY ASP LEU LYS LEU LYS ASP SEQRES 17 B 554 ALA LEU SER ASN ILE ARG GLU ALA PHE ILE GLY GLY ASN SEQRES 18 B 554 TYR ASP ILE ASN SER HIS LEU PRO LEU ILE PRO GLU LYS SEQRES 19 B 554 ILE LYS SER LEU LYS PHE GLU GLY ASP VAL PHE ASN PRO SEQRES 20 B 554 GLU GLY ARG ASP LEU ILE THR ASP TRP ASP ASP VAL ILE SEQRES 21 B 554 LEU ALA LEU GLY SER GLN VAL CYS LYS GLY ILE ARG ASP SEQRES 22 B 554 SER ILE LYS ASP ILE LEU GLY TYR THR THR SER CYS GLY SEQRES 23 B 554 LEU SER SER THR LYS ASN VAL CYS LYS LEU ALA SER ASN SEQRES 24 B 554 TYR LYS LYS PRO ASP ALA GLN THR ILE VAL LYS ASN ASP SEQRES 25 B 554 CYS LEU LEU ASP PHE LEU ASP CYS GLY LYS PHE GLU ILE SEQRES 26 B 554 THR SER PHE TRP THR LEU GLY GLY VAL LEU GLY LYS GLU SEQRES 27 B 554 LEU ILE ASP VAL LEU ASP LEU PRO HIS GLU ASN SER ILE SEQRES 28 B 554 LYS HIS ILE ARG GLU THR TRP PRO ASP ASN ALA GLY GLN SEQRES 29 B 554 LEU LYS GLU PHE LEU ASP ALA LYS VAL LYS GLN SER ASP SEQRES 30 B 554 TYR ASP ARG SER THR SER ASN ILE ASP PRO LEU LYS THR SEQRES 31 B 554 ALA ASP LEU ALA GLU LYS LEU PHE LYS LEU SER ARG GLY SEQRES 32 B 554 ARG TYR GLY LEU PRO LEU SER SER ARG PRO VAL VAL LYS SEQRES 33 B 554 SER MET MET SER ASN LYS ASN LEU ARG GLY LYS SER CYS SEQRES 34 B 554 ASN SER ILE VAL ASP CYS ILE SER TRP LEU GLU VAL PHE SEQRES 35 B 554 CYS ALA GLU LEU THR SER ARG ILE GLN ASP LEU GLU GLN SEQRES 36 B 554 GLU TYR ASN LYS ILE VAL ILE PRO ARG THR VAL SER ILE SEQRES 37 B 554 SER LEU LYS THR LYS SER TYR GLU VAL TYR ARG LYS SER SEQRES 38 B 554 GLY PRO VAL ALA TYR LYS GLY ILE ASN PHE GLN SER HIS SEQRES 39 B 554 GLU LEU LEU LYS VAL GLY ILE LYS PHE VAL THR ASP LEU SEQRES 40 B 554 ASP ILE LYS GLY LYS ASN LYS SER TYR TYR PRO LEU THR SEQRES 41 B 554 LYS LEU SER MET THR ILE THR ASN PHE ASP ILE ILE ASP SEQRES 42 B 554 LEU GLN LYS THR VAL VAL ASP MET PHE GLY ASN GLN VAL SEQRES 43 B 554 HIS THR PHE LYS SER SER ALA GLY HET CPT U 45 3 HET CPT T 45 3 HET CA A1501 1 HET CA A1502 1 HET DCP A2001 28 HET CA B1701 1 HET CA B1702 1 HET DCP B3001 28 HETNAM CPT CISPLATIN HETNAM CA CALCIUM ION HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETSYN CPT DIAMMINE(DICHLORO)PLATINUM FORMUL 7 CPT 2(CL2 H6 N2 PT) FORMUL 9 CA 4(CA 2+) FORMUL 11 DCP 2(C9 H16 N3 O13 P3) FORMUL 15 HOH *121(H2 O) HELIX 1 1 THR A 5 GLN A 11 1 7 HELIX 2 2 LEU A 12 SER A 14 5 3 HELIX 3 3 ALA A 33 CYS A 43 1 11 HELIX 4 4 ALA A 65 GLY A 70 5 6 HELIX 5 5 THR A 76 LYS A 82 1 7 HELIX 6 6 SER A 120 GLU A 122 5 3 HELIX 7 7 LEU A 128 CYS A 146 1 19 HELIX 8 8 LEU A 161 ASP A 172 1 12 HELIX 9 9 LYS A 182 LEU A 187 1 6 HELIX 10 10 LEU A 187 GLY A 197 1 11 HELIX 11 11 PRO A 209 LEU A 215 5 7 HELIX 12 12 ASP A 232 LEU A 256 1 25 HELIX 13 13 THR A 267 LYS A 278 1 12 HELIX 14 14 LYS A 287 ASP A 289 5 3 HELIX 15 15 CYS A 290 ASP A 296 1 7 HELIX 16 16 GLU A 301 PHE A 305 5 5 HELIX 17 17 GLY A 310 ASP A 321 1 12 HELIX 18 18 ASN A 326 THR A 334 1 9 HELIX 19 19 ASN A 338 VAL A 350 1 13 HELIX 20 20 ASP A 363 LEU A 365 5 3 HELIX 21 21 LYS A 366 SER A 378 1 13 HELIX 22 22 SER A 408 ASN A 435 1 28 HELIX 23 23 HIS A 471 GLY A 488 1 18 HELIX 24 24 THR B 5 LEU B 12 1 8 HELIX 25 25 ALA B 33 CYS B 43 1 11 HELIX 26 26 SER B 63 LYS B 68 1 6 HELIX 27 27 THR B 76 CYS B 84 1 9 HELIX 28 28 SER B 120 GLU B 122 5 3 HELIX 29 29 LEU B 128 CYS B 146 1 19 HELIX 30 30 LEU B 161 ASP B 172 1 12 HELIX 31 31 LYS B 182 LEU B 187 1 6 HELIX 32 32 LEU B 187 GLY B 197 1 11 HELIX 33 33 PRO B 209 LEU B 215 5 7 HELIX 34 34 ASP B 232 LEU B 256 1 25 HELIX 35 35 THR B 267 TYR B 277 1 11 HELIX 36 36 LYS B 287 ASP B 289 5 3 HELIX 37 37 CYS B 290 ASP B 296 1 7 HELIX 38 38 GLU B 301 PHE B 305 5 5 HELIX 39 39 GLY B 310 LEU B 320 1 11 HELIX 40 40 ASN B 326 TRP B 335 1 10 HELIX 41 41 ASN B 338 LYS B 351 1 14 HELIX 42 42 ASP B 356 SER B 360 5 5 HELIX 43 43 LYS B 366 ARG B 379 1 14 HELIX 44 44 SER B 408 TYR B 434 1 27 HELIX 45 45 SER B 470 GLY B 488 1 19 SHEET 1 A 6 VAL A 149 SER A 153 0 SHEET 2 A 6 GLU A 156 ASP A 160 -1 O PHE A 158 N GLU A 150 SHEET 3 A 6 ILE A 26 MET A 31 -1 N ALA A 27 O LEU A 159 SHEET 4 A 6 THR A 260 SER A 265 -1 O SER A 261 N ASP A 30 SHEET 5 A 6 GLN A 283 ILE A 285 1 O THR A 284 N LEU A 264 SHEET 6 A 6 ASP A 220 VAL A 221 1 N ASP A 220 O ILE A 285 SHEET 1 B 3 SER A 58 VAL A 62 0 SHEET 2 B 3 VAL A 51 GLN A 55 -1 N GLN A 55 O SER A 58 SHEET 3 B 3 ILE A 88 HIS A 91 1 O ILE A 90 N VAL A 54 SHEET 1 C 3 TRP A 102 GLN A 103 0 SHEET 2 C 3 VAL A 94 LYS A 96 -1 N VAL A 94 O GLN A 103 SHEET 3 C 3 HIS A 124 VAL A 126 -1 O LYS A 125 N PHE A 95 SHEET 1 D 4 MET A 395 LYS A 399 0 SHEET 2 D 4 LYS A 498 PHE A 506 -1 O MET A 501 N SER A 397 SHEET 3 D 4 PRO A 440 LYS A 448 -1 N SER A 446 O SER A 500 SHEET 4 D 4 VAL A 454 PRO A 460 -1 O LYS A 457 N ILE A 445 SHEET 1 E 6 VAL B 149 ARG B 151 0 SHEET 2 E 6 GLU B 156 ASP B 160 -1 O PHE B 158 N GLU B 150 SHEET 3 E 6 ILE B 26 MET B 31 -1 N ALA B 27 O LEU B 159 SHEET 4 E 6 THR B 260 SER B 265 -1 O SER B 265 N ILE B 26 SHEET 5 E 6 GLN B 283 ILE B 285 1 O THR B 284 N CYS B 262 SHEET 6 E 6 ASP B 220 VAL B 221 1 N ASP B 220 O ILE B 285 SHEET 1 F 3 SER B 58 VAL B 62 0 SHEET 2 F 3 VAL B 51 GLN B 55 -1 N CYS B 53 O ILE B 60 SHEET 3 F 3 ILE B 88 HIS B 91 1 O ILE B 90 N VAL B 52 SHEET 1 G 2 VAL B 94 LYS B 96 0 SHEET 2 G 2 HIS B 124 VAL B 126 -1 O LYS B 125 N PHE B 95 SHEET 1 H 4 SER B 394 ASN B 400 0 SHEET 2 H 4 LYS B 498 ILE B 509 -1 O MET B 501 N SER B 397 SHEET 3 H 4 ILE B 437 LYS B 448 -1 N ILE B 437 O ILE B 509 SHEET 4 H 4 VAL B 454 LYS B 457 -1 O TYR B 455 N LEU B 447 LINK N7 DG U 4 PT1 CPT U 45 1555 1555 1.96 LINK N7 DG U 5 PT1 CPT U 45 1555 1555 2.01 LINK N7 DG T 4 PT1 CPT T 45 1555 1555 1.96 LINK N7 DG T 5 PT1 CPT T 45 1555 1555 1.99 LINK OD2 ASP A 30 CA CA A1501 1555 1555 2.70 LINK OD1 ASP A 30 CA CA A1502 1555 1555 2.09 LINK O MET A 31 CA CA A1502 1555 1555 2.46 LINK OD1 ASP A 155 CA CA A1502 1555 1555 2.26 LINK OE1 GLU A 156 CA CA A1501 1555 1555 2.64 LINK CA CA A1501 O1A DCP A2001 1555 1555 3.14 LINK CA CA A1501 O HOH A2004 1555 1555 2.68 LINK CA CA A1502 O2B DCP A2001 1555 1555 2.68 LINK CA CA A1502 O3G DCP A2001 1555 1555 2.74 LINK CA CA A1502 O1A DCP A2001 1555 1555 2.30 LINK OD2 ASP B 30 CA CA B1701 1555 1555 2.76 LINK OD1 ASP B 30 CA CA B1702 1555 1555 2.38 LINK OD2 ASP B 30 CA CA B1702 1555 1555 2.88 LINK O MET B 31 CA CA B1702 1555 1555 2.60 LINK OD1 ASP B 155 CA CA B1701 1555 1555 2.79 LINK OD2 ASP B 155 CA CA B1701 1555 1555 2.75 LINK OD1 ASP B 155 CA CA B1702 1555 1555 2.15 LINK OE1 GLU B 156 CA CA B1701 1555 1555 2.47 LINK CA CA B1701 O1A DCP B3001 1555 1555 2.56 LINK CA CA B1702 O1G DCP B3001 1555 1555 2.54 LINK CA CA B1702 O1A DCP B3001 1555 1555 2.41 LINK CA CA B1702 O2B DCP B3001 1555 1555 2.42 CISPEP 1 LYS A 279 PRO A 280 0 -0.23 CISPEP 2 TYR A 494 PRO A 495 0 -0.31 CISPEP 3 LYS B 279 PRO B 280 0 0.12 CISPEP 4 TYR B 494 PRO B 495 0 -0.07 SITE 1 AC1 4 DG Q 13 DG U 4 DG U 5 DC U 6 SITE 1 AC2 4 DG P 13 DG T 4 DG T 5 DC T 6 SITE 1 AC3 5 ASP A 30 GLU A 156 DCP A2001 HOH A2004 SITE 2 AC3 5 DG Q 13 SITE 1 AC4 4 ASP A 30 MET A 31 ASP A 155 DCP A2001 SITE 1 AC5 5 ASP B 30 ASP B 155 GLU B 156 CA B1702 SITE 2 AC5 5 DCP B3001 SITE 1 AC6 5 ASP B 30 MET B 31 ASP B 155 CA B1701 SITE 2 AC6 5 DCP B3001 SITE 1 AC7 16 ASP A 30 MET A 31 ASN A 32 ALA A 33 SITE 2 AC7 16 PHE A 34 PHE A 35 ILE A 60 TYR A 64 SITE 3 AC7 16 ARG A 67 ARG A 73 ASP A 155 LYS A 279 SITE 4 AC7 16 CA A1501 CA A1502 DG Q 13 DG U 5 SITE 1 AC8 17 ASP B 30 MET B 31 ASN B 32 ALA B 33 SITE 2 AC8 17 PHE B 34 PHE B 35 ILE B 60 TYR B 64 SITE 3 AC8 17 ARG B 67 ARG B 73 ASP B 155 LYS B 279 SITE 4 AC8 17 CA B1701 CA B1702 HOH B3056 DG P 13 SITE 5 AC8 17 DG T 5 CRYST1 104.090 104.090 293.050 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009607 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009607 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003412 0.00000