HEADER TRANSFERASE/DNA 13-SEP-07 2R9L TITLE POLYMERASE DOMAIN FROM MYCOBACTERIUM TUBERCULOSIS LIGASE D IN COMPLEX TITLE 2 WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(P*DGP*DCP*DGP*DGP*DC)-3'); COMPND 3 CHAIN: C, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*DGP*DCP*DCP*DGP*DCP*DAP*DAP*DCP*DGP*DCP*DA)-3'); COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'- COMPND 11 D(*DGP*DCP*DCP*DGP*DCP*DAP*DAP*DCP*DGP*DCP*DAP*DCP*DG)-3'); COMPND 12 CHAIN: F; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: PUTATIVE DNA LIGASE-LIKE PROTEIN; COMPND 16 CHAIN: A, B; COMPND 17 FRAGMENT: LIGD POLYMERASE DOMAIN RESIDUES 1-300; COMPND 18 EC: 2.7.7.-; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 15 ORGANISM_TAXID: 83332; SOURCE 16 STRAIN: H37RV; SOURCE 17 GENE: RV0938; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSFERASE, PROTEIN-DNA COMPLEX, ATP-BINDING, LIGASE, NUCLEOTIDE- KEYWDS 2 BINDING, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.C.BRISSETT,G.C.FOX,R.S.PITCHER,A.J.DOHERTY REVDAT 5 30-AUG-23 2R9L 1 REMARK SEQADV REVDAT 4 25-OCT-17 2R9L 1 SOURCE REMARK REVDAT 3 13-JUL-11 2R9L 1 VERSN REVDAT 2 24-FEB-09 2R9L 1 VERSN REVDAT 1 08-JAN-08 2R9L 0 JRNL AUTH N.C.BRISSETT,R.S.PITCHER,R.JUAREZ,A.J.PICHER,A.J.GREEN, JRNL AUTH 2 T.R.DAFFORN,G.C.FOX,L.BLANCO,A.J.DOHERTY JRNL TITL STRUCTURE OF A NHEJ POLYMERASE-MEDIATED DNA SYNAPTIC COMPLEX JRNL REF SCIENCE V. 318 456 2007 JRNL REFN ISSN 0036-8075 JRNL PMID 17947582 JRNL DOI 10.1126/SCIENCE.1145112 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 29486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1502 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2037 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4348 REMARK 3 NUCLEIC ACID ATOMS : 693 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.77000 REMARK 3 B22 (A**2) : -7.02000 REMARK 3 B33 (A**2) : 2.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.471 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.289 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.231 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.383 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5249 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7286 ; 1.015 ; 2.138 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 5.572 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;29.146 ;22.597 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 695 ;14.560 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;15.472 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 835 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3745 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2297 ; 0.220 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3475 ; 0.322 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 409 ; 0.213 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.223 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.472 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2899 ; 0.681 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4588 ; 1.048 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2910 ; 1.576 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2698 ; 2.173 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 8 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 9 A 81 1 REMARK 3 1 B 9 B 81 1 REMARK 3 2 A 82 A 87 6 REMARK 3 2 B 82 B 87 6 REMARK 3 3 A 88 A 118 1 REMARK 3 3 B 88 B 118 1 REMARK 3 4 A 126 A 140 1 REMARK 3 4 B 126 B 140 1 REMARK 3 5 A 153 A 183 1 REMARK 3 5 B 153 B 183 1 REMARK 3 6 A 186 A 202 1 REMARK 3 6 B 186 B 202 1 REMARK 3 7 A 226 A 255 1 REMARK 3 7 B 226 B 255 1 REMARK 3 8 A 268 A 289 5 REMARK 3 8 B 268 B 289 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1510 ; 0.030 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 88 ; 0.260 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 132 ; 0.710 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 1510 ; 0.080 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 88 ; 0.570 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 132 ; 2.000 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 1 C 5 1 REMARK 3 1 E 1 E 5 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 C (A): 105 ; 0.030 ; 0.050 REMARK 3 TIGHT THERMAL 2 C (A**2): 105 ; 0.050 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : D F REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 D 1 D 5 4 REMARK 3 1 F 1 F 5 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 D (A): 98 ; 0.250 ; 0.500 REMARK 3 MEDIUM THERMAL 3 D (A**2): 98 ; 0.510 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0339 -11.8104 -13.8771 REMARK 3 T TENSOR REMARK 3 T11: -0.2939 T22: -0.2495 REMARK 3 T33: -0.3297 T12: -0.0857 REMARK 3 T13: -0.0813 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.9635 L22: 10.7638 REMARK 3 L33: 4.3118 L12: -0.2897 REMARK 3 L13: -0.8570 L23: 1.3682 REMARK 3 S TENSOR REMARK 3 S11: 0.0716 S12: -0.0658 S13: 0.5187 REMARK 3 S21: 0.0992 S22: -0.1229 S23: -0.3499 REMARK 3 S31: -0.6329 S32: 0.3137 S33: 0.0513 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): -17.4047 -20.3539 -56.5617 REMARK 3 T TENSOR REMARK 3 T11: 0.1279 T22: -0.0889 REMARK 3 T33: -0.2107 T12: -0.0944 REMARK 3 T13: -0.3089 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 5.9609 L22: 10.0354 REMARK 3 L33: 3.4649 L12: 1.8110 REMARK 3 L13: -0.2070 L23: 0.0352 REMARK 3 S TENSOR REMARK 3 S11: -0.2277 S12: 0.6817 S13: -0.3046 REMARK 3 S21: -1.2175 S22: 0.2945 S23: 0.7960 REMARK 3 S31: 0.5779 S32: -0.0933 S33: -0.0669 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 5 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9965 4.0545 -18.4468 REMARK 3 T TENSOR REMARK 3 T11: 0.3082 T22: -0.2158 REMARK 3 T33: -0.0087 T12: -0.1003 REMARK 3 T13: -0.0504 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.3065 L22: 18.9171 REMARK 3 L33: 9.4954 L12: -2.7870 REMARK 3 L13: 3.5106 L23: -8.3908 REMARK 3 S TENSOR REMARK 3 S11: 0.3016 S12: 0.2152 S13: 0.6349 REMARK 3 S21: -0.6782 S22: -0.4069 S23: -0.7085 REMARK 3 S31: -1.2342 S32: 0.8317 S33: 0.1054 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 5 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7334 5.1346 -20.8041 REMARK 3 T TENSOR REMARK 3 T11: 0.4018 T22: -0.1584 REMARK 3 T33: 0.2128 T12: -0.0438 REMARK 3 T13: -0.3446 T23: 0.0664 REMARK 3 L TENSOR REMARK 3 L11: 0.6830 L22: 64.5998 REMARK 3 L33: 3.8745 L12: -4.6216 REMARK 3 L13: -0.3277 L23: 13.3478 REMARK 3 S TENSOR REMARK 3 S11: 0.2583 S12: 0.1972 S13: 0.4480 REMARK 3 S21: -0.8303 S22: -1.0966 S23: 1.6984 REMARK 3 S31: -1.0556 S32: -0.5104 S33: 0.8383 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 5 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7992 -34.6475 -53.7896 REMARK 3 T TENSOR REMARK 3 T11: 0.4412 T22: -0.1897 REMARK 3 T33: 0.3257 T12: -0.0593 REMARK 3 T13: -0.1236 T23: -0.0721 REMARK 3 L TENSOR REMARK 3 L11: 17.1830 L22: 12.8025 REMARK 3 L33: 6.9118 L12: -13.2779 REMARK 3 L13: 7.6925 L23: -4.1245 REMARK 3 S TENSOR REMARK 3 S11: 0.7233 S12: 0.8576 S13: -1.9864 REMARK 3 S21: -1.7531 S22: -0.6473 S23: -0.1737 REMARK 3 S31: 0.9203 S32: 0.2769 S33: -0.0760 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 7 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0872 -29.1904 -45.3880 REMARK 3 T TENSOR REMARK 3 T11: 0.2831 T22: -0.1729 REMARK 3 T33: -0.1319 T12: 0.0766 REMARK 3 T13: -0.2915 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 5.6570 L22: 38.1132 REMARK 3 L33: 3.0213 L12: -4.0490 REMARK 3 L13: -4.1339 L23: 2.8238 REMARK 3 S TENSOR REMARK 3 S11: -0.2855 S12: -0.2589 S13: -0.3745 REMARK 3 S21: 1.8461 S22: -0.3175 S23: -1.9801 REMARK 3 S31: 0.7842 S32: 0.1691 S33: 0.6030 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 105 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): -19.0044 -1.5714 -49.4339 REMARK 3 T TENSOR REMARK 3 T11: -0.2437 T22: -0.1865 REMARK 3 T33: 0.1114 T12: -0.0255 REMARK 3 T13: -0.2965 T23: 0.1635 REMARK 3 L TENSOR REMARK 3 L11: 3.4183 L22: 12.7765 REMARK 3 L33: 2.6386 L12: 0.7287 REMARK 3 L13: 0.6235 L23: 2.6807 REMARK 3 S TENSOR REMARK 3 S11: -0.2077 S12: 0.2941 S13: 0.8550 REMARK 3 S21: -0.6979 S22: 0.2121 S23: 1.9824 REMARK 3 S31: 0.0325 S32: -0.2765 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 174 B 216 REMARK 3 ORIGIN FOR THE GROUP (A): -17.3168 4.3106 -42.1757 REMARK 3 T TENSOR REMARK 3 T11: -0.2693 T22: -0.2927 REMARK 3 T33: 0.1387 T12: 0.0169 REMARK 3 T13: -0.0243 T23: 0.0771 REMARK 3 L TENSOR REMARK 3 L11: 10.6664 L22: 14.0631 REMARK 3 L33: 6.3835 L12: 2.2682 REMARK 3 L13: -2.3403 L23: 1.4935 REMARK 3 S TENSOR REMARK 3 S11: 0.1980 S12: -0.4707 S13: 0.4632 REMARK 3 S21: 0.3502 S22: -0.0863 S23: 2.2706 REMARK 3 S31: -0.3526 S32: -0.0976 S33: -0.1117 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 217 B 289 REMARK 3 ORIGIN FOR THE GROUP (A): -27.4927 -6.5164 -48.4460 REMARK 3 T TENSOR REMARK 3 T11: -0.2147 T22: -0.0569 REMARK 3 T33: 0.5706 T12: -0.0614 REMARK 3 T13: -0.2505 T23: 0.0993 REMARK 3 L TENSOR REMARK 3 L11: 6.4538 L22: 8.9819 REMARK 3 L33: 3.2152 L12: 2.4767 REMARK 3 L13: 1.6017 L23: 1.6203 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: 0.0258 S13: 0.6531 REMARK 3 S21: -0.1873 S22: -0.0525 S23: 2.6091 REMARK 3 S31: 0.2535 S32: -0.6926 S33: 0.0234 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 11 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8491 -16.5133 -31.8618 REMARK 3 T TENSOR REMARK 3 T11: 0.2260 T22: 0.0697 REMARK 3 T33: -0.0360 T12: 0.0656 REMARK 3 T13: -0.4005 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 3.3330 L22: 2.5695 REMARK 3 L33: 4.1559 L12: 1.3871 REMARK 3 L13: 2.1147 L23: -0.9244 REMARK 3 S TENSOR REMARK 3 S11: -0.3554 S12: -0.3061 S13: 0.5544 REMARK 3 S21: -1.1257 S22: 0.0344 S23: 1.1889 REMARK 3 S31: -0.4446 S32: -0.8871 S33: 0.3210 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 8 F 13 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1885 -12.1801 -34.2900 REMARK 3 T TENSOR REMARK 3 T11: 0.0439 T22: 0.1125 REMARK 3 T33: 0.1021 T12: 0.0988 REMARK 3 T13: -0.4262 T23: 0.0777 REMARK 3 L TENSOR REMARK 3 L11: 5.8902 L22: 14.5290 REMARK 3 L33: 8.1284 L12: -0.9967 REMARK 3 L13: 3.4013 L23: 7.5048 REMARK 3 S TENSOR REMARK 3 S11: 0.4052 S12: -0.8985 S13: 1.1070 REMARK 3 S21: -0.1477 S22: 0.2422 S23: 1.1699 REMARK 3 S31: -0.2506 S32: -0.4867 S33: -0.6475 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8224 -30.1594 -20.0025 REMARK 3 T TENSOR REMARK 3 T11: -0.4436 T22: -0.2354 REMARK 3 T33: -0.3862 T12: 0.0482 REMARK 3 T13: -0.0557 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.2545 L22: 11.0391 REMARK 3 L33: 2.8639 L12: -0.2709 REMARK 3 L13: 0.7253 L23: 0.6683 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: 0.0323 S13: -0.1141 REMARK 3 S21: 0.0138 S22: -0.0922 S23: 0.6790 REMARK 3 S31: -0.0492 S32: -0.0832 S33: 0.0463 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3721 -35.2255 -25.4391 REMARK 3 T TENSOR REMARK 3 T11: -0.2215 T22: -0.1899 REMARK 3 T33: -0.0394 T12: 0.0243 REMARK 3 T13: -0.2244 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: 8.9156 L22: 8.9231 REMARK 3 L33: 6.4238 L12: 0.7542 REMARK 3 L13: 0.0117 L23: 0.6918 REMARK 3 S TENSOR REMARK 3 S11: 0.4015 S12: 0.4766 S13: -0.5138 REMARK 3 S21: -1.0823 S22: -0.1941 S23: 1.6501 REMARK 3 S31: 0.0797 S32: -0.7813 S33: -0.2074 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 217 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7795 -28.1014 -11.3980 REMARK 3 T TENSOR REMARK 3 T11: -0.3261 T22: -0.1825 REMARK 3 T33: -0.3098 T12: -0.0706 REMARK 3 T13: 0.1130 T23: -0.0689 REMARK 3 L TENSOR REMARK 3 L11: 2.2938 L22: 11.0962 REMARK 3 L33: 5.9778 L12: 1.4341 REMARK 3 L13: 0.3272 L23: 2.7629 REMARK 3 S TENSOR REMARK 3 S11: 0.1765 S12: -0.1615 S13: 0.0176 REMARK 3 S21: 1.1910 S22: -0.6398 S23: 1.0188 REMARK 3 S31: 0.5004 S32: -0.5053 S33: 0.4633 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.60 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2R9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000044596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29540 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2IRU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(W/V)PEG 3350, 0.2 M AMMONIUM REMARK 280 CHLORIDE, 10MM MNCL2, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.26550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.77100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.89400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.77100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.26550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.89400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 SER A 5 REMARK 465 VAL A 293 REMARK 465 ALA A 294 REMARK 465 ASP A 295 REMARK 465 ARG A 296 REMARK 465 LEU A 297 REMARK 465 THR A 298 REMARK 465 ARG A 299 REMARK 465 TYR A 300 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 ALA B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 GLN B 7 REMARK 465 ASP B 290 REMARK 465 ALA B 291 REMARK 465 PRO B 292 REMARK 465 VAL B 293 REMARK 465 ALA B 294 REMARK 465 ASP B 295 REMARK 465 ARG B 296 REMARK 465 LEU B 297 REMARK 465 THR B 298 REMARK 465 ARG B 299 REMARK 465 TYR B 300 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 480 SER A 123 CB OG REMARK 480 GLU A 142 CB CG CD OE1 OE2 REMARK 480 ALA A 147 CB REMARK 480 ALA A 209 CB REMARK 480 LEU A 219 CB CG CD1 CD2 REMARK 480 VAL B 17 CG2 REMARK 480 GLU B 38 CG CD OE1 OE2 REMARK 480 PRO B 74 CB CG REMARK 480 ALA B 96 CB REMARK 480 THR B 97 CG2 REMARK 480 ALA B 100 CB REMARK 480 PRO B 121 CG CD REMARK 480 ALA B 147 CB REMARK 480 ALA B 209 CB REMARK 480 LEU B 210 CD1 CD2 REMARK 480 THR B 216 CG2 REMARK 480 LEU B 219 CD1 CD2 REMARK 480 ALA B 258 CB REMARK 480 ASP B 261 OD2 REMARK 480 PRO B 263 CG REMARK 480 LEU B 283 CD2 REMARK 480 GLU B 285 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 198 O1 PEG A 297 2.00 REMARK 500 OP2 DG C 3 O HOH C 16 2.05 REMARK 500 O ALA B 278 O HOH B 315 2.14 REMARK 500 O6 DG E 3 O HOH E 31 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 184 NH1 ARG B 198 3544 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 1 P DG C 1 OP3 -0.121 REMARK 500 DG E 1 P DG E 1 OP3 -0.134 REMARK 500 ALA B 278 C ALA B 278 O 0.125 REMARK 500 ARG B 279 CZ ARG B 279 NH1 0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 1 OP1 - P - OP2 ANGL. DEV. = -11.4 DEGREES REMARK 500 DG C 1 O4' - C1' - N9 ANGL. DEV. = -5.1 DEGREES REMARK 500 DC D 5 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG E 1 OP1 - P - OP2 ANGL. DEV. = -11.7 DEGREES REMARK 500 DG E 1 O4' - C1' - N9 ANGL. DEV. = -4.2 DEGREES REMARK 500 DC F 5 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA F 6 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DG F 9 O4' - C1' - N9 ANGL. DEV. = -4.6 DEGREES REMARK 500 DC F 12 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 ARG B 279 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 66 -52.67 -123.47 REMARK 500 ASP A 94 18.68 -147.31 REMARK 500 PRO A 121 108.28 -57.75 REMARK 500 SER A 123 55.63 -158.43 REMARK 500 SER A 174 -105.08 -110.45 REMARK 500 THR A 216 111.83 -15.68 REMARK 500 LEU A 219 52.47 -97.61 REMARK 500 ARG A 220 49.18 -140.74 REMARK 500 TYR A 241 -8.23 83.07 REMARK 500 ALA A 252 87.39 -68.88 REMARK 500 ALA A 264 41.20 -89.33 REMARK 500 LYS B 66 -52.12 -121.21 REMARK 500 ASP B 94 17.19 -145.51 REMARK 500 SER B 174 -105.40 -111.44 REMARK 500 MET B 215 -71.39 -39.78 REMARK 500 THR B 216 92.10 4.42 REMARK 500 TYR B 241 -8.41 84.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 297 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IRU RELATED DB: PDB REMARK 900 THE SAME PROTEIN REMARK 900 RELATED ID: 2IRX RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH BOUND GTP AND MANGANESE REMARK 900 RELATED ID: 2IRY RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH BOUND DGTP AND MANGANESE DBREF 2R9L C 1 5 PDB 2R9L 2R9L 1 5 DBREF 2R9L D 1 11 PDB 2R9L 2R9L 1 11 DBREF 2R9L E 1 5 PDB 2R9L 2R9L 1 5 DBREF 2R9L F 1 13 PDB 2R9L 2R9L 1 13 DBREF 2R9L A 1 300 UNP P71571 Y938_MYCTU 1 300 DBREF 2R9L B 1 300 UNP P71571 Y938_MYCTU 1 300 SEQADV 2R9L GLY A -2 UNP P71571 EXPRESSION TAG SEQADV 2R9L SER A -1 UNP P71571 EXPRESSION TAG SEQADV 2R9L HIS A 0 UNP P71571 EXPRESSION TAG SEQADV 2R9L GLY B -2 UNP P71571 EXPRESSION TAG SEQADV 2R9L SER B -1 UNP P71571 EXPRESSION TAG SEQADV 2R9L HIS B 0 UNP P71571 EXPRESSION TAG SEQRES 1 C 5 DG DC DG DG DC SEQRES 1 D 11 DG DC DC DG DC DA DA DC DG DC DA SEQRES 1 E 5 DG DC DG DG DC SEQRES 1 F 13 DG DC DC DG DC DA DA DC DG DC DA DC DG SEQRES 1 A 303 GLY SER HIS MET GLY SER ALA SER GLU GLN ARG VAL THR SEQRES 2 A 303 LEU THR ASN ALA ASP LYS VAL LEU TYR PRO ALA THR GLY SEQRES 3 A 303 THR THR LYS SER ASP ILE PHE ASP TYR TYR ALA GLY VAL SEQRES 4 A 303 ALA GLU VAL MET LEU GLY HIS ILE ALA GLY ARG PRO ALA SEQRES 5 A 303 THR ARG LYS ARG TRP PRO ASN GLY VAL ASP GLN PRO ALA SEQRES 6 A 303 PHE PHE GLU LYS GLN LEU ALA LEU SER ALA PRO PRO TRP SEQRES 7 A 303 LEU SER ARG ALA THR VAL ALA HIS ARG SER GLY THR THR SEQRES 8 A 303 THR TYR PRO ILE ILE ASP SER ALA THR GLY LEU ALA TRP SEQRES 9 A 303 ILE ALA GLN GLN ALA ALA LEU GLU VAL HIS VAL PRO GLN SEQRES 10 A 303 TRP ARG PHE VAL ALA GLU PRO GLY SER GLY GLU LEU ASN SEQRES 11 A 303 PRO GLY PRO ALA THR ARG LEU VAL PHE ASP LEU ASP PRO SEQRES 12 A 303 GLY GLU GLY VAL MET MET ALA GLN LEU ALA GLU VAL ALA SEQRES 13 A 303 ARG ALA VAL ARG ASP LEU LEU ALA ASP ILE GLY LEU VAL SEQRES 14 A 303 THR PHE PRO VAL THR SER GLY SER LYS GLY LEU HIS LEU SEQRES 15 A 303 TYR THR PRO LEU ASP GLU PRO VAL SER SER ARG GLY ALA SEQRES 16 A 303 THR VAL LEU ALA LYS ARG VAL ALA GLN ARG LEU GLU GLN SEQRES 17 A 303 ALA MET PRO ALA LEU VAL THR SER THR MET THR LYS SER SEQRES 18 A 303 LEU ARG ALA GLY LYS VAL PHE VAL ASP TRP SER GLN ASN SEQRES 19 A 303 SER GLY SER LYS THR THR ILE ALA PRO TYR SER LEU ARG SEQRES 20 A 303 GLY ARG THR HIS PRO THR VAL ALA ALA PRO ARG THR TRP SEQRES 21 A 303 ALA GLU LEU ASP ASP PRO ALA LEU ARG GLN LEU SER TYR SEQRES 22 A 303 ASP GLU VAL LEU THR ARG ILE ALA ARG ASP GLY ASP LEU SEQRES 23 A 303 LEU GLU ARG LEU ASP ALA ASP ALA PRO VAL ALA ASP ARG SEQRES 24 A 303 LEU THR ARG TYR SEQRES 1 B 303 GLY SER HIS MET GLY SER ALA SER GLU GLN ARG VAL THR SEQRES 2 B 303 LEU THR ASN ALA ASP LYS VAL LEU TYR PRO ALA THR GLY SEQRES 3 B 303 THR THR LYS SER ASP ILE PHE ASP TYR TYR ALA GLY VAL SEQRES 4 B 303 ALA GLU VAL MET LEU GLY HIS ILE ALA GLY ARG PRO ALA SEQRES 5 B 303 THR ARG LYS ARG TRP PRO ASN GLY VAL ASP GLN PRO ALA SEQRES 6 B 303 PHE PHE GLU LYS GLN LEU ALA LEU SER ALA PRO PRO TRP SEQRES 7 B 303 LEU SER ARG ALA THR VAL ALA HIS ARG SER GLY THR THR SEQRES 8 B 303 THR TYR PRO ILE ILE ASP SER ALA THR GLY LEU ALA TRP SEQRES 9 B 303 ILE ALA GLN GLN ALA ALA LEU GLU VAL HIS VAL PRO GLN SEQRES 10 B 303 TRP ARG PHE VAL ALA GLU PRO GLY SER GLY GLU LEU ASN SEQRES 11 B 303 PRO GLY PRO ALA THR ARG LEU VAL PHE ASP LEU ASP PRO SEQRES 12 B 303 GLY GLU GLY VAL MET MET ALA GLN LEU ALA GLU VAL ALA SEQRES 13 B 303 ARG ALA VAL ARG ASP LEU LEU ALA ASP ILE GLY LEU VAL SEQRES 14 B 303 THR PHE PRO VAL THR SER GLY SER LYS GLY LEU HIS LEU SEQRES 15 B 303 TYR THR PRO LEU ASP GLU PRO VAL SER SER ARG GLY ALA SEQRES 16 B 303 THR VAL LEU ALA LYS ARG VAL ALA GLN ARG LEU GLU GLN SEQRES 17 B 303 ALA MET PRO ALA LEU VAL THR SER THR MET THR LYS SER SEQRES 18 B 303 LEU ARG ALA GLY LYS VAL PHE VAL ASP TRP SER GLN ASN SEQRES 19 B 303 SER GLY SER LYS THR THR ILE ALA PRO TYR SER LEU ARG SEQRES 20 B 303 GLY ARG THR HIS PRO THR VAL ALA ALA PRO ARG THR TRP SEQRES 21 B 303 ALA GLU LEU ASP ASP PRO ALA LEU ARG GLN LEU SER TYR SEQRES 22 B 303 ASP GLU VAL LEU THR ARG ILE ALA ARG ASP GLY ASP LEU SEQRES 23 B 303 LEU GLU ARG LEU ASP ALA ASP ALA PRO VAL ALA ASP ARG SEQRES 24 B 303 LEU THR ARG TYR HET EDO A 293 4 HET EDO A 294 4 HET EDO A 295 4 HET EDO A 296 4 HET PEG A 297 7 HET EDO B 293 4 HET EDO B 294 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 7 EDO 6(C2 H6 O2) FORMUL 11 PEG C4 H10 O3 FORMUL 14 HOH *97(H2 O) HELIX 1 1 THR A 25 ALA A 45 1 21 HELIX 2 2 SER A 95 GLN A 105 1 11 HELIX 3 3 MET A 145 ILE A 163 1 19 HELIX 4 4 SER A 188 MET A 207 1 20 HELIX 5 5 THR A 216 ARG A 220 5 5 HELIX 6 6 TRP A 228 SER A 232 5 5 HELIX 7 7 THR A 256 ASP A 261 1 6 HELIX 8 8 SER A 269 GLY A 281 1 13 HELIX 9 9 THR B 25 ALA B 45 1 21 HELIX 10 10 SER B 95 GLN B 105 1 11 HELIX 11 11 MET B 145 ILE B 163 1 19 HELIX 12 12 SER B 188 MET B 207 1 20 HELIX 13 13 THR B 216 ARG B 220 5 5 HELIX 14 14 TRP B 228 SER B 232 5 5 HELIX 15 15 THR B 256 ASP B 261 1 6 HELIX 16 16 TYR B 270 GLY B 281 1 12 SHEET 1 A 4 PHE A 63 GLU A 65 0 SHEET 2 A 4 THR A 50 ARG A 53 -1 N ARG A 51 O GLU A 65 SHEET 3 A 4 GLU A 109 VAL A 112 -1 O HIS A 111 N THR A 50 SHEET 4 A 4 THR A 237 ILE A 238 -1 O THR A 237 N VAL A 112 SHEET 1 B 2 SER A 77 HIS A 83 0 SHEET 2 B 2 GLY A 86 ILE A 92 -1 O THR A 88 N VAL A 81 SHEET 1 C 4 TRP A 115 ALA A 119 0 SHEET 2 C 4 LEU A 126 PRO A 140 -1 O ASN A 127 N VAL A 118 SHEET 3 C 4 VAL A 224 ASP A 227 -1 O ASP A 227 N ASP A 137 SHEET 4 C 4 VAL A 211 THR A 212 1 N THR A 212 O VAL A 224 SHEET 1 D 5 TRP A 115 ALA A 119 0 SHEET 2 D 5 LEU A 126 PRO A 140 -1 O ASN A 127 N VAL A 118 SHEET 3 D 5 LEU A 177 VAL A 187 -1 O LEU A 177 N LEU A 138 SHEET 4 D 5 PHE A 168 THR A 171 -1 N VAL A 170 O HIS A 178 SHEET 5 D 5 ALA A 253 PRO A 254 -1 O ALA A 253 N THR A 171 SHEET 1 E 4 PHE B 63 GLU B 65 0 SHEET 2 E 4 THR B 50 ARG B 53 -1 N ARG B 51 O GLU B 65 SHEET 3 E 4 GLU B 109 VAL B 112 -1 O HIS B 111 N THR B 50 SHEET 4 E 4 THR B 237 ILE B 238 -1 O THR B 237 N VAL B 112 SHEET 1 F 2 SER B 77 HIS B 83 0 SHEET 2 F 2 GLY B 86 ILE B 92 -1 O THR B 88 N VAL B 81 SHEET 1 G 4 TRP B 115 ALA B 119 0 SHEET 2 G 4 LEU B 126 PRO B 140 -1 O ASN B 127 N VAL B 118 SHEET 3 G 4 VAL B 224 ASP B 227 -1 O ASP B 227 N ASP B 137 SHEET 4 G 4 VAL B 211 THR B 212 1 N THR B 212 O VAL B 226 SHEET 1 H 5 TRP B 115 ALA B 119 0 SHEET 2 H 5 LEU B 126 PRO B 140 -1 O ASN B 127 N VAL B 118 SHEET 3 H 5 LEU B 177 VAL B 187 -1 O LEU B 177 N LEU B 138 SHEET 4 H 5 PHE B 168 THR B 171 -1 N VAL B 170 O HIS B 178 SHEET 5 H 5 ALA B 253 PRO B 254 -1 O ALA B 253 N THR B 171 SHEET 1 I 2 THR B 250 VAL B 251 0 SHEET 2 I 2 LEU B 268 SER B 269 -1 O LEU B 268 N VAL B 251 SITE 1 AC1 5 LEU A 183 LEU A 195 PEG A 297 HOH A 347 SITE 2 AC1 5 ARG B 198 SITE 1 AC2 3 HOH A 344 ILE B 163 LEU B 195 SITE 1 AC3 2 LYS B 235 THR B 236 SITE 1 AC4 5 LYS B 52 TRP B 54 GLU B 109 GLY B 245 SITE 2 AC4 5 ARG B 246 SITE 1 AC5 4 HIS A 111 THR A 236 THR A 237 ILE A 238 SITE 1 AC6 6 LYS A 52 TRP A 54 GLU A 109 ARG A 244 SITE 2 AC6 6 GLY A 245 ARG A 246 SITE 1 AC7 4 ILE A 163 LEU A 195 ARG A 198 EDO A 293 CRYST1 48.531 111.788 139.542 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020605 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007166 0.00000