HEADER HYDROLASE 13-SEP-07 2R9V TITLE CRYSTAL STRUCTURE OF ATP SYNTHASE SUBUNIT ALPHA (TM1612) FROM TITLE 2 THERMOTOGA MARITIMA AT 2.10 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATPASE SUBUNIT ALPHA, ATP SYNTHASE F1 SECTOR SUBUNIT ALPHA; COMPND 5 EC: 3.6.3.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8, DSM 3109, JCM 10099; SOURCE 5 ATCC: 43589; SOURCE 6 GENE: TM1612, ATPA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TM1612, ATP SYNTHASE SUBUNIT ALPHA, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 ATP SYNTHESIS, ATP-BINDING, CF1, HYDROGEN ION TRANSPORT, HYDROLASE, KEYWDS 4 INNER MEMBRANE, ION TRANSPORT, MEMBRANE, NUCLEOTIDE-BINDING, KEYWDS 5 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2R9V 1 SEQADV LINK REVDAT 5 24-JUL-19 2R9V 1 REMARK LINK REVDAT 4 25-OCT-17 2R9V 1 REMARK REVDAT 3 13-JUL-11 2R9V 1 VERSN REVDAT 2 24-FEB-09 2R9V 1 VERSN REVDAT 1 02-OCT-07 2R9V 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF ATP SYNTHASE SUBUNIT ALPHA (TM1612) JRNL TITL 2 FROM THERMOTOGA MARITIMA AT 2.10 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 62319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3176 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4282 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 237 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3802 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 465 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62000 REMARK 3 B22 (A**2) : 1.62000 REMARK 3 B33 (A**2) : -3.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.152 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3971 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2770 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5383 ; 1.644 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6758 ; 0.978 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 504 ; 4.831 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;31.171 ;23.729 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 718 ;13.231 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;18.325 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 611 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4386 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 788 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 855 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2985 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1998 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2084 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 297 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.009 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.310 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 58 ; 0.285 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.196 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2565 ; 2.401 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1002 ; 0.521 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3955 ; 3.365 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1645 ; 4.311 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1419 ; 5.390 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 503 REMARK 3 ORIGIN FOR THE GROUP (A): 51.8986 15.8776 81.6205 REMARK 3 T TENSOR REMARK 3 T11: -0.0956 T22: -0.0438 REMARK 3 T33: -0.0208 T12: -0.0223 REMARK 3 T13: 0.0356 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.4867 L22: 0.2466 REMARK 3 L33: 1.5962 L12: -0.0038 REMARK 3 L13: 0.4094 L23: 0.2937 REMARK 3 S TENSOR REMARK 3 S11: 0.0888 S12: -0.0210 S13: 0.0535 REMARK 3 S21: -0.0005 S22: -0.1393 S23: 0.0076 REMARK 3 S31: -0.0360 S32: 0.0062 S33: 0.0505 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. PG4 (PEG 200) AND CL IONS FROM THE CRYSTALLIZATION SOLUTION REMARK 3 ARE MODELED. ATP AND MAGNESIUM WERE MODELED BASED ON HOMOLOGS REMARK 3 AND DENSITY. RESIDUES 1-16 AS WELL AS PURIFICATION TAG ARE REMARK 3 DISORDERED. REMARK 4 REMARK 4 2R9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.21 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62330 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.679 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.170 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.29 REMARK 200 R MERGE FOR SHELL (I) : 0.89700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 1.3% PEG 6000, 0.1M CITRIC REMARK 280 ACID PH 4.21, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.69000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.70500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.84500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.70500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 164.53500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.70500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.70500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.84500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.70500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.70500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 164.53500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 109.69000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY AND CRYSTAL PACKING REMARK 300 ANALYSIS SUPPORT THE ASSIGNMENT OF A MONOMER AS A REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 LEU A 1 REMARK 465 ARG A 2 REMARK 465 ILE A 3 REMARK 465 ASN A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 ILE A 8 REMARK 465 THR A 9 REMARK 465 LYS A 10 REMARK 465 VAL A 11 REMARK 465 LEU A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 14 REMARK 465 LYS A 15 REMARK 465 ILE A 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 SER A 18 OG REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 ILE A 138 CD1 REMARK 470 LYS A 308 CD CE NZ REMARK 470 LYS A 492 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 68 O HOH A 777 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 280 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 280 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 71 48.69 -152.89 REMARK 500 ARG A 284 80.39 -158.69 REMARK 500 ALA A 357 49.93 -85.21 REMARK 500 ARG A 366 -74.11 -33.32 REMARK 500 HIS A 469 38.41 -144.07 REMARK 500 THR A 499 -38.71 -37.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 177 OG1 REMARK 620 2 ATP A 506 O2G 165.3 REMARK 620 3 ATP A 506 O2B 93.0 78.0 REMARK 620 4 HOH A 540 O 92.9 98.9 91.7 REMARK 620 5 HOH A 687 O 93.2 74.2 81.7 171.3 REMARK 620 6 HOH A 816 O 92.2 92.5 159.5 107.8 78.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283469 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHH FOLLOWED BY THE TARGET SEQUENCE. THIS GENE REMARK 999 USES AN ALTERNATE INITIATION CODON THAT RESULTS IN A REMARK 999 LEUCINE AT POSITION 1 WHEN EXPRESSED AS A FUSION. DBREF 2R9V A 2 503 UNP Q9X1U7 ATPA_THEMA 2 503 SEQADV 2R9V MSE A -11 UNP Q9X1U7 EXPRESSION TAG SEQADV 2R9V GLY A -10 UNP Q9X1U7 EXPRESSION TAG SEQADV 2R9V SER A -9 UNP Q9X1U7 EXPRESSION TAG SEQADV 2R9V ASP A -8 UNP Q9X1U7 EXPRESSION TAG SEQADV 2R9V LYS A -7 UNP Q9X1U7 EXPRESSION TAG SEQADV 2R9V ILE A -6 UNP Q9X1U7 EXPRESSION TAG SEQADV 2R9V HIS A -5 UNP Q9X1U7 EXPRESSION TAG SEQADV 2R9V HIS A -4 UNP Q9X1U7 EXPRESSION TAG SEQADV 2R9V HIS A -3 UNP Q9X1U7 EXPRESSION TAG SEQADV 2R9V HIS A -2 UNP Q9X1U7 EXPRESSION TAG SEQADV 2R9V HIS A -1 UNP Q9X1U7 EXPRESSION TAG SEQADV 2R9V HIS A 0 UNP Q9X1U7 EXPRESSION TAG SEQADV 2R9V LEU A 1 UNP Q9X1U7 EXPRESSION TAG SEQRES 1 A 515 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS LEU SEQRES 2 A 515 ARG ILE ASN PRO GLY GLU ILE THR LYS VAL LEU GLU GLU SEQRES 3 A 515 LYS ILE LYS SER PHE GLU GLU LYS ILE ASP LEU GLU ASP SEQRES 4 A 515 THR GLY LYS VAL ILE GLN VAL GLY ASP GLY ILE ALA ARG SEQRES 5 A 515 ALA TYR GLY LEU ASN LYS VAL MSE VAL SER GLU LEU VAL SEQRES 6 A 515 GLU PHE VAL GLU THR GLY VAL LYS GLY VAL ALA PHE ASN SEQRES 7 A 515 LEU GLU GLU ASP ASN VAL GLY ILE ILE ILE LEU GLY GLU SEQRES 8 A 515 TYR LYS ASP ILE LYS GLU GLY HIS THR VAL ARG ARG LEU SEQRES 9 A 515 LYS ARG ILE ILE GLU VAL PRO VAL GLY GLU GLU LEU LEU SEQRES 10 A 515 GLY ARG VAL VAL ASN PRO LEU GLY GLU PRO LEU ASP GLY SEQRES 11 A 515 LYS GLY PRO ILE ASN ALA LYS ASN PHE ARG PRO ILE GLU SEQRES 12 A 515 ILE LYS ALA PRO GLY VAL ILE TYR ARG LYS PRO VAL ASP SEQRES 13 A 515 THR PRO LEU GLN THR GLY ILE LYS ALA ILE ASP SER MSE SEQRES 14 A 515 ILE PRO ILE GLY ARG GLY GLN ARG GLU LEU ILE ILE GLY SEQRES 15 A 515 ASP ARG GLN THR GLY LYS THR ALA ILE ALA ILE ASP THR SEQRES 16 A 515 ILE ILE ASN GLN LYS GLY GLN GLY VAL TYR CYS ILE TYR SEQRES 17 A 515 VAL ALA ILE GLY GLN LYS LYS SER ALA ILE ALA ARG ILE SEQRES 18 A 515 ILE ASP LYS LEU ARG GLN TYR GLY ALA MSE GLU TYR THR SEQRES 19 A 515 THR VAL VAL VAL ALA SER ALA SER ASP PRO ALA SER LEU SEQRES 20 A 515 GLN TYR ILE ALA PRO TYR ALA GLY CYS ALA MSE GLY GLU SEQRES 21 A 515 TYR PHE ALA TYR SER GLY ARG ASP ALA LEU VAL VAL TYR SEQRES 22 A 515 ASP ASP LEU SER LYS HIS ALA VAL ALA TYR ARG GLN LEU SEQRES 23 A 515 SER LEU LEU MSE ARG ARG PRO PRO GLY ARG GLU ALA TYR SEQRES 24 A 515 PRO GLY ASP ILE PHE TYR LEU HIS SER ARG LEU LEU GLU SEQRES 25 A 515 ARG ALA VAL ARG LEU ASN ASP LYS LEU GLY GLY GLY SER SEQRES 26 A 515 LEU THR ALA LEU PRO ILE VAL GLU THR GLN ALA ASN ASP SEQRES 27 A 515 ILE SER ALA TYR ILE PRO THR ASN VAL ILE SER ILE THR SEQRES 28 A 515 ASP GLY GLN ILE TYR LEU GLU PRO GLY LEU PHE TYR ALA SEQRES 29 A 515 GLY GLN ARG PRO ALA ILE ASN VAL GLY LEU SER VAL SER SEQRES 30 A 515 ARG VAL GLY GLY SER ALA GLN ILE LYS ALA MSE LYS GLN SEQRES 31 A 515 VAL ALA GLY MSE LEU ARG ILE ASP LEU ALA GLN TYR ARG SEQRES 32 A 515 GLU LEU GLU THR PHE ALA GLN PHE ALA THR GLU LEU ASP SEQRES 33 A 515 PRO ALA THR ARG ALA GLN ILE ILE ARG GLY GLN ARG LEU SEQRES 34 A 515 MSE GLU LEU LEU LYS GLN GLU GLN TYR SER PRO MSE PRO SEQRES 35 A 515 VAL GLU GLU GLN VAL VAL VAL LEU PHE ALA GLY VAL ARG SEQRES 36 A 515 GLY TYR LEU ASP ASP LEU PRO VAL GLU GLU VAL ARG ARG SEQRES 37 A 515 PHE GLU LYS GLU PHE LEU ARG PHE MSE HIS GLU LYS HIS SEQRES 38 A 515 GLN ASP ILE LEU ASP ASP ILE LYS THR LYS LYS GLU LEU SEQRES 39 A 515 THR SER GLU THR GLU GLU LYS LEU LYS LYS ALA ILE GLU SEQRES 40 A 515 GLU PHE LYS THR THR PHE ARG VAL MODRES 2R9V MSE A 48 MET SELENOMETHIONINE MODRES 2R9V MSE A 157 MET SELENOMETHIONINE MODRES 2R9V MSE A 219 MET SELENOMETHIONINE MODRES 2R9V MSE A 246 MET SELENOMETHIONINE MODRES 2R9V MSE A 278 MET SELENOMETHIONINE MODRES 2R9V MSE A 376 MET SELENOMETHIONINE MODRES 2R9V MSE A 382 MET SELENOMETHIONINE MODRES 2R9V MSE A 418 MET SELENOMETHIONINE MODRES 2R9V MSE A 429 MET SELENOMETHIONINE MODRES 2R9V MSE A 465 MET SELENOMETHIONINE HET MSE A 48 8 HET MSE A 157 8 HET MSE A 219 8 HET MSE A 246 8 HET MSE A 278 8 HET MSE A 376 8 HET MSE A 382 8 HET MSE A 418 8 HET MSE A 429 8 HET MSE A 465 8 HET MG A 504 1 HET CL A 505 1 HET ATP A 506 31 HET PG4 A 507 13 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 CL CL 1- FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 PG4 C8 H18 O5 FORMUL 6 HOH *465(H2 O) HELIX 1 1 GLY A 101 LEU A 105 5 5 HELIX 2 2 GLY A 136 ARG A 140 5 5 HELIX 3 3 ILE A 151 ILE A 158 1 8 HELIX 4 4 GLY A 175 ASN A 186 1 12 HELIX 5 5 LYS A 202 TYR A 216 1 15 HELIX 6 6 GLY A 217 GLU A 220 5 4 HELIX 7 7 PRO A 232 TYR A 252 1 21 HELIX 8 8 ASP A 263 LEU A 277 1 15 HELIX 9 9 ASP A 290 GLU A 300 1 11 HELIX 10 10 ALA A 329 ILE A 338 1 10 HELIX 11 11 GLU A 346 GLY A 353 1 8 HELIX 12 12 VAL A 367 GLY A 369 5 3 HELIX 13 13 ILE A 373 THR A 395 1 23 HELIX 14 14 PHE A 396 ALA A 400 5 5 HELIX 15 15 ASP A 404 LEU A 421 1 18 HELIX 16 16 PRO A 430 ARG A 443 1 14 HELIX 17 17 PRO A 450 GLU A 452 5 3 HELIX 18 18 GLU A 453 HIS A 469 1 17 HELIX 19 19 HIS A 469 LYS A 480 1 12 HELIX 20 20 THR A 483 PHE A 501 1 19 SHEET 1 A 7 THR A 28 GLY A 35 0 SHEET 2 A 7 ILE A 38 GLY A 43 -1 O ARG A 40 N ILE A 32 SHEET 3 A 7 VAL A 72 LEU A 77 -1 O ILE A 74 N ALA A 39 SHEET 4 A 7 LYS A 61 ASN A 66 -1 N VAL A 63 O ILE A 75 SHEET 5 A 7 GLU A 51 PHE A 55 -1 N GLU A 51 O ALA A 64 SHEET 6 A 7 THR A 88 ILE A 95 -1 O ARG A 94 N LEU A 52 SHEET 7 A 7 THR A 28 GLY A 35 -1 N GLY A 29 O VAL A 89 SHEET 1 B 2 GLU A 97 VAL A 100 0 SHEET 2 B 2 ASN A 126 PRO A 129 -1 O ARG A 128 N VAL A 98 SHEET 1 C 6 VAL A 108 VAL A 109 0 SHEET 2 C 6 THR A 222 ALA A 227 1 O VAL A 224 N VAL A 109 SHEET 3 C 6 VAL A 192 ILE A 199 1 N TYR A 196 O THR A 223 SHEET 4 C 6 ASP A 256 ASP A 262 1 O ASP A 262 N ILE A 199 SHEET 5 C 6 SER A 313 THR A 322 1 O LEU A 317 N VAL A 259 SHEET 6 C 6 VAL A 303 ARG A 304 -1 N VAL A 303 O LEU A 314 SHEET 1 D 8 VAL A 108 VAL A 109 0 SHEET 2 D 8 THR A 222 ALA A 227 1 O VAL A 224 N VAL A 109 SHEET 3 D 8 VAL A 192 ILE A 199 1 N TYR A 196 O THR A 223 SHEET 4 D 8 ASP A 256 ASP A 262 1 O ASP A 262 N ILE A 199 SHEET 5 D 8 SER A 313 THR A 322 1 O LEU A 317 N VAL A 259 SHEET 6 D 8 GLU A 166 ASP A 171 1 N GLU A 166 O ALA A 316 SHEET 7 D 8 GLY A 341 TYR A 344 1 O GLY A 341 N LEU A 167 SHEET 8 D 8 VAL A 364 SER A 365 -1 O VAL A 364 N GLN A 342 SHEET 1 E 2 PRO A 146 LEU A 147 0 SHEET 2 E 2 ILE A 160 GLY A 161 -1 O ILE A 160 N LEU A 147 LINK C VAL A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N VAL A 49 1555 1555 1.33 LINK C SER A 156 N MSE A 157 1555 1555 1.32 LINK C MSE A 157 N ILE A 158 1555 1555 1.34 LINK C ALA A 218 N MSE A 219 1555 1555 1.33 LINK C MSE A 219 N GLU A 220 1555 1555 1.30 LINK C ALA A 245 N MSE A 246 1555 1555 1.33 LINK C MSE A 246 N GLY A 247 1555 1555 1.33 LINK C LEU A 277 N MSE A 278 1555 1555 1.33 LINK C MSE A 278 N ARG A 279 1555 1555 1.32 LINK C ALA A 375 N MSE A 376 1555 1555 1.33 LINK C MSE A 376 N LYS A 377 1555 1555 1.33 LINK C GLY A 381 N MSE A 382 1555 1555 1.32 LINK C MSE A 382 N LEU A 383 1555 1555 1.33 LINK C LEU A 417 N MSE A 418 1555 1555 1.32 LINK C MSE A 418 N GLU A 419 1555 1555 1.32 LINK C PRO A 428 N MSE A 429 1555 1555 1.32 LINK C MSE A 429 N PRO A 430 1555 1555 1.33 LINK C PHE A 464 N MSE A 465 1555 1555 1.33 LINK C MSE A 465 N HIS A 466 1555 1555 1.32 LINK OG1 THR A 177 MG MG A 504 1555 1555 1.98 LINK MG MG A 504 O2G ATP A 506 1555 1555 2.13 LINK MG MG A 504 O2B ATP A 506 1555 1555 2.25 LINK MG MG A 504 O HOH A 540 1555 1555 2.08 LINK MG MG A 504 O HOH A 687 1555 1555 2.31 LINK MG MG A 504 O HOH A 816 1555 1555 2.20 CISPEP 1 ASP A 262 ASP A 263 0 1.32 CISPEP 2 ARG A 355 PRO A 356 0 3.32 CRYST1 97.410 97.410 219.380 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010266 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004558 0.00000