HEADER TRANSCRIPTION 14-SEP-07 2RA5 TITLE CRYSTAL STRUCTURE OF THE PUTATIVE TRANSCRIPTIONAL REGULATOR FROM TITLE 2 STREPTOMYCES COELICOLOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR A3(2); SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 STRAIN: A3(2), M145; SOURCE 5 ATCC: BAA-471; SOURCE 6 GENE: SCO6256; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BETA STRUCTURE, UTRA DOMAIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,X.XU,H.ZHENG,A.SAVCHENKO,A.M.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 6 16-OCT-24 2RA5 1 REMARK SEQADV LINK REVDAT 5 17-MAR-09 2RA5 1 JRNL REVDAT 4 24-FEB-09 2RA5 1 VERSN REVDAT 3 10-JUN-08 2RA5 1 JRNL REVDAT 2 20-NOV-07 2RA5 1 JRNL REVDAT 1 25-SEP-07 2RA5 0 JRNL AUTH Y.KIM,X.XU,H.ZHENG,A.SAVCHENKO,A.M.EDWARDS,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF THE PUTATIVE TRANSCRIPTIONAL REGULATOR JRNL TITL 2 FROM STREPTOMYCES COELICOLOR. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 6124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 675 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 337 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1149 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.15000 REMARK 3 B22 (A**2) : 1.15000 REMARK 3 B33 (A**2) : -2.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.584 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.333 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1223 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1661 ; 1.804 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 156 ; 6.616 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;30.176 ;21.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 198 ;21.298 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.799 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 190 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 942 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 499 ; 0.281 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 814 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 59 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 77 ; 0.446 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.325 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 767 ; 8.426 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1231 ;10.397 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 456 ;13.252 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 430 ;17.536 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE REPRESENTS PROTEOLYZED REMARK 3 FRAGMENTS. PHENIX PROGRAM HAS ALSO BEEN USED IN REFINEMENT. REMARK 4 REMARK 4 2RA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6859 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 20.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11600 REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELX, MLPHARE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 18.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.5, 0.2M MGCL2, 20% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.36750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.88400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.88400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 128.05125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.88400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.88400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.68375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.88400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.88400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 128.05125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.88400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.88400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.68375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.36750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2720 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 43.76800 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 43.76800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 85.36750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 VAL A 7 REMARK 465 ASP A 8 REMARK 465 ARG A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 PRO A 12 REMARK 465 VAL A 13 REMARK 465 PRO A 14 REMARK 465 LEU A 15 REMARK 465 TYR A 16 REMARK 465 PHE A 17 REMARK 465 GLN A 18 REMARK 465 LEU A 19 REMARK 465 SER A 20 REMARK 465 GLN A 21 REMARK 465 GLN A 22 REMARK 465 LEU A 23 REMARK 465 GLU A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 ILE A 27 REMARK 465 GLU A 28 REMARK 465 HIS A 29 REMARK 465 GLY A 30 REMARK 465 ALA A 31 REMARK 465 LEU A 32 REMARK 465 THR A 33 REMARK 465 PRO A 34 REMARK 465 GLY A 35 REMARK 465 SER A 36 REMARK 465 LEU A 37 REMARK 465 LEU A 38 REMARK 465 GLY A 39 REMARK 465 ASN A 40 REMARK 465 GLU A 41 REMARK 465 ILE A 42 REMARK 465 GLU A 43 REMARK 465 LEU A 44 REMARK 465 ALA A 45 REMARK 465 ALA A 46 REMARK 465 ARG A 47 REMARK 465 LEU A 48 REMARK 465 GLY A 49 REMARK 465 LEU A 50 REMARK 465 SER A 51 REMARK 465 ARG A 52 REMARK 465 PRO A 53 REMARK 465 THR A 54 REMARK 465 VAL A 55 REMARK 465 ARG A 56 REMARK 465 GLN A 57 REMARK 465 ALA A 58 REMARK 465 ILE A 59 REMARK 465 GLN A 60 REMARK 465 SER A 61 REMARK 465 LEU A 62 REMARK 465 VAL A 63 REMARK 465 ASP A 64 REMARK 465 LYS A 65 REMARK 465 GLY A 73 REMARK 465 VAL A 74 REMARK 465 GLY A 75 REMARK 465 THR A 76 REMARK 465 GLN A 77 REMARK 465 VAL A 78 REMARK 465 VAL A 79 REMARK 465 HIS A 80 REMARK 465 SER A 81 REMARK 465 LYS A 82 REMARK 465 VAL A 83 REMARK 465 ARG A 84 REMARK 465 ARG A 85 REMARK 465 PRO A 86 REMARK 465 LEU A 87 REMARK 465 GLU A 88 REMARK 465 LEU A 89 REMARK 465 SER A 90 REMARK 465 SER A 91 REMARK 465 LEU A 92 REMARK 465 TYR A 93 REMARK 465 ASP A 94 REMARK 465 ASP A 95 REMARK 465 LEU A 96 REMARK 465 GLU A 97 REMARK 465 ALA A 98 REMARK 465 ALA A 99 REMARK 465 GLY A 100 REMARK 465 GLN A 101 REMARK 465 ARG A 102 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 251 O HOH A 299 2.11 REMARK 500 O4 SRT A 247 O HOH A 276 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 70 O HOH A 281 3644 2.17 REMARK 500 NH1 ARG A 72 OE2 GLU A 130 3644 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 72 CA - C - O ANGL. DEV. = -47.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 128 -0.20 64.11 REMARK 500 ASP A 160 117.60 -29.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SRT A 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 246 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7351 RELATED DB: TARGETDB DBREF 2RA5 A 1 245 UNP Q9RKT6 Q9RKT6_STRCO 1 245 SEQADV 2RA5 GLY A -1 UNP Q9RKT6 EXPRESSION TAG SEQADV 2RA5 HIS A 0 UNP Q9RKT6 EXPRESSION TAG SEQRES 1 A 247 GLY HIS MSE SER LEU ASP LEU SER VAL ASP ARG SER SER SEQRES 2 A 247 PRO VAL PRO LEU TYR PHE GLN LEU SER GLN GLN LEU GLU SEQRES 3 A 247 ALA ALA ILE GLU HIS GLY ALA LEU THR PRO GLY SER LEU SEQRES 4 A 247 LEU GLY ASN GLU ILE GLU LEU ALA ALA ARG LEU GLY LEU SEQRES 5 A 247 SER ARG PRO THR VAL ARG GLN ALA ILE GLN SER LEU VAL SEQRES 6 A 247 ASP LYS GLY LEU LEU VAL ARG ARG ARG GLY VAL GLY THR SEQRES 7 A 247 GLN VAL VAL HIS SER LYS VAL ARG ARG PRO LEU GLU LEU SEQRES 8 A 247 SER SER LEU TYR ASP ASP LEU GLU ALA ALA GLY GLN ARG SEQRES 9 A 247 PRO ALA THR LYS VAL LEU VAL ASN THR VAL VAL PRO ALA SEQRES 10 A 247 THR ALA GLU ILE ALA ALA ALA LEU GLY VAL ALA GLU ASP SEQRES 11 A 247 SER GLU VAL HIS ARG ILE GLU ARG LEU ARG LEU THR HIS SEQRES 12 A 247 GLY GLU PRO MSE ALA TYR LEU CYS ASN TYR LEU PRO PRO SEQRES 13 A 247 GLY LEU VAL ASP LEU ASP THR GLY GLN LEU GLU ALA THR SEQRES 14 A 247 GLY LEU TYR ARG LEU MSE ARG ALA ALA GLY ILE THR LEU SEQRES 15 A 247 HIS SER ALA ARG GLN SER ILE GLY ALA ARG ALA ALA THR SEQRES 16 A 247 SER GLY GLU ALA GLU ARG LEU GLY GLU ASP ALA GLY ALA SEQRES 17 A 247 PRO LEU LEU THR MSE GLU ARG THR THR PHE ASP ASP THR SEQRES 18 A 247 GLY ARG ALA VAL GLU PHE GLY THR HIS THR TYR ARG PRO SEQRES 19 A 247 SER ARG TYR SER PHE GLU PHE GLN LEU LEU VAL ARG PRO MODRES 2RA5 MSE A 145 MET SELENOMETHIONINE MODRES 2RA5 MSE A 173 MET SELENOMETHIONINE MODRES 2RA5 MSE A 211 MET SELENOMETHIONINE HET MSE A 145 8 HET MSE A 173 8 HET MSE A 211 8 HET SRT A 247 10 HET IPA A 246 4 HETNAM MSE SELENOMETHIONINE HETNAM SRT S,R MESO-TARTARIC ACID HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 SRT C4 H6 O6 FORMUL 3 IPA C3 H8 O FORMUL 4 HOH *52(H2 O) HELIX 1 1 THR A 116 GLY A 124 1 9 HELIX 2 2 GLY A 162 THR A 167 1 6 HELIX 3 3 GLY A 168 ALA A 176 1 9 HELIX 4 4 THR A 193 GLY A 201 1 9 SHEET 1 A 2 LEU A 67 ARG A 71 0 SHEET 2 A 2 PHE A 239 VAL A 243 -1 O LEU A 242 N LEU A 68 SHEET 1 B 6 ALA A 104 PRO A 114 0 SHEET 2 B 6 GLU A 130 THR A 140 -1 O LEU A 139 N ALA A 104 SHEET 3 B 6 GLU A 143 LEU A 152 -1 O MSE A 145 N ARG A 138 SHEET 4 B 6 ALA A 222 TYR A 230 -1 O THR A 227 N CYS A 149 SHEET 5 B 6 PRO A 207 PHE A 216 -1 N THR A 215 O VAL A 223 SHEET 6 B 6 SER A 182 ALA A 191 -1 N ARG A 190 O LEU A 208 LINK C PRO A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N ALA A 146 1555 1555 1.33 LINK C LEU A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N ARG A 174 1555 1555 1.33 LINK C THR A 210 N MSE A 211 1555 1555 1.32 LINK C MSE A 211 N GLU A 212 1555 1555 1.32 SITE 1 AC1 6 ARG A 136 ARG A 138 LEU A 169 TYR A 170 SITE 2 AC1 6 ARG A 213 HOH A 276 SITE 1 AC2 7 PRO A 114 ALA A 115 THR A 116 GLU A 127 SITE 2 AC2 7 ASP A 128 ASP A 218 GLY A 220 CRYST1 43.768 43.768 170.735 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022848 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005857 0.00000 HETATM 381 N MSE A 145 30.529 34.524 41.587 1.00 62.22 N HETATM 382 CA MSE A 145 30.190 33.163 41.189 1.00 66.66 C HETATM 383 C MSE A 145 29.636 32.328 42.346 1.00 69.04 C HETATM 384 O MSE A 145 28.659 31.581 42.198 1.00 57.61 O HETATM 385 CB MSE A 145 31.435 32.485 40.634 1.00 56.96 C HETATM 386 CG MSE A 145 31.202 31.048 40.260 1.00 69.53 C HETATM 387 SE MSE A 145 32.876 30.260 39.720 0.65 84.80 SE HETATM 388 CE MSE A 145 33.421 29.485 41.438 1.00127.09 C HETATM 616 N MSE A 173 45.774 24.261 53.899 1.00 56.42 N HETATM 617 CA MSE A 173 45.697 23.289 54.990 1.00 77.08 C HETATM 618 C MSE A 173 46.755 22.207 54.852 1.00 65.69 C HETATM 619 O MSE A 173 47.391 21.809 55.827 1.00 55.02 O HETATM 620 CB MSE A 173 44.306 22.661 55.075 1.00 63.40 C HETATM 621 CG MSE A 173 43.192 23.668 55.361 1.00 65.93 C HETATM 622 SE MSE A 173 41.453 22.844 55.680 0.75 82.47 SE HETATM 623 CE MSE A 173 41.416 21.597 54.185 1.00 87.18 C HETATM 892 N MSE A 211 25.856 23.735 48.398 1.00 53.93 N HETATM 893 CA MSE A 211 26.549 22.541 48.814 1.00 52.49 C HETATM 894 C MSE A 211 27.132 22.626 50.238 1.00 56.91 C HETATM 895 O MSE A 211 27.555 23.686 50.721 1.00 45.84 O HETATM 896 CB MSE A 211 27.577 22.164 47.762 1.00 51.83 C HETATM 897 CG MSE A 211 28.973 22.596 48.037 1.00 73.39 C HETATM 898 SE MSE A 211 30.071 21.035 48.371 0.85 90.73 SE HETATM 899 CE MSE A 211 31.819 21.861 48.091 1.00 64.37 C TER 1189 PRO A 245 HETATM 1190 O1 SRT A 247 36.894 25.645 50.096 1.00 78.97 O HETATM 1191 O11 SRT A 247 35.901 25.186 48.160 1.00 80.36 O HETATM 1192 C1 SRT A 247 36.892 25.609 48.832 1.00 78.79 C HETATM 1193 C2 SRT A 247 38.107 26.131 48.087 1.00 75.69 C HETATM 1194 O2 SRT A 247 39.134 26.496 49.016 1.00 70.63 O HETATM 1195 C3 SRT A 247 38.609 25.136 47.020 1.00 75.43 C HETATM 1196 O3 SRT A 247 39.383 25.776 45.996 1.00 75.31 O HETATM 1197 C4 SRT A 247 39.465 24.070 47.629 1.00 76.16 C HETATM 1198 O4 SRT A 247 40.724 24.217 47.680 1.00 74.42 O HETATM 1199 O41 SRT A 247 38.838 23.077 48.053 1.00 76.86 O HETATM 1200 C1 IPA A 246 25.589 27.449 70.322 1.00 60.61 C HETATM 1201 C2 IPA A 246 25.286 28.906 69.971 1.00 66.69 C HETATM 1202 C3 IPA A 246 24.221 28.975 68.899 1.00 63.73 C HETATM 1203 O2 IPA A 246 26.402 29.649 69.503 1.00 67.77 O HETATM 1204 O HOH A 248 35.243 30.721 53.152 1.00 42.86 O HETATM 1205 O HOH A 249 33.133 15.380 63.128 1.00 42.55 O HETATM 1206 O HOH A 250 41.880 31.775 44.452 1.00 82.14 O HETATM 1207 O HOH A 251 28.539 17.751 55.867 1.00 48.77 O HETATM 1208 O HOH A 252 22.384 25.214 64.340 1.00 62.71 O HETATM 1209 O HOH A 253 35.273 20.949 71.661 1.00 51.59 O HETATM 1210 O HOH A 254 34.096 10.906 54.756 1.00 45.76 O HETATM 1211 O HOH A 255 39.496 32.821 61.592 1.00 61.97 O HETATM 1212 O HOH A 256 49.241 17.046 53.087 1.00 75.87 O HETATM 1213 O HOH A 257 22.665 20.855 50.966 1.00 53.57 O HETATM 1214 O HOH A 258 21.115 36.559 55.011 1.00 93.90 O HETATM 1215 O HOH A 259 48.401 32.407 57.373 1.00 94.47 O HETATM 1216 O HOH A 260 42.381 35.760 43.923 1.00 77.05 O HETATM 1217 O HOH A 261 44.438 38.403 59.002 1.00 86.63 O HETATM 1218 O HOH A 262 36.243 24.097 68.906 1.00 45.41 O HETATM 1219 O HOH A 263 26.989 42.228 43.715 1.00 99.64 O HETATM 1220 O HOH A 264 18.151 37.970 54.624 1.00 97.90 O HETATM 1221 O HOH A 265 20.440 35.360 52.749 1.00 90.96 O HETATM 1222 O HOH A 266 22.422 32.643 38.350 1.00 62.01 O HETATM 1223 O HOH A 267 43.894 28.361 65.641 1.00 75.38 O HETATM 1224 O HOH A 268 49.965 30.871 49.406 1.00102.77 O HETATM 1225 O HOH A 269 46.704 15.444 60.037 1.00 65.12 O HETATM 1226 O HOH A 270 46.454 15.662 51.919 1.00 63.09 O HETATM 1227 O HOH A 271 39.063 10.556 56.718 1.00 55.20 O HETATM 1228 O HOH A 272 35.174 19.451 48.146 1.00 65.64 O HETATM 1229 O HOH A 273 22.338 25.963 52.235 1.00 58.62 O HETATM 1230 O HOH A 274 35.670 15.090 63.932 1.00 40.86 O HETATM 1231 O HOH A 275 37.507 9.693 64.937 1.00 59.46 O HETATM 1232 O HOH A 276 42.894 24.301 47.546 1.00 60.21 O HETATM 1233 O HOH A 277 42.855 26.425 62.559 1.00 79.00 O HETATM 1234 O HOH A 278 36.404 26.611 73.132 1.00 64.31 O HETATM 1235 O HOH A 279 28.533 29.755 65.134 1.00 64.12 O HETATM 1236 O HOH A 280 24.356 26.887 62.115 1.00 69.68 O HETATM 1237 O HOH A 281 32.447 23.621 74.809 1.00 68.77 O HETATM 1238 O HOH A 282 31.448 10.871 56.457 1.00 64.72 O HETATM 1239 O HOH A 283 19.348 22.886 50.089 1.00 66.74 O HETATM 1240 O HOH A 284 16.938 41.160 47.004 1.00 73.45 O HETATM 1241 O HOH A 285 45.248 32.146 62.727 1.00 91.38 O HETATM 1242 O HOH A 286 22.828 26.198 68.417 1.00 67.66 O HETATM 1243 O HOH A 287 27.142 15.357 61.559 1.00 57.79 O HETATM 1244 O HOH A 288 38.370 39.023 32.195 1.00 86.22 O HETATM 1245 O HOH A 289 35.819 42.634 39.401 1.00 96.00 O HETATM 1246 O HOH A 290 45.151 28.912 67.623 1.00 72.07 O HETATM 1247 O HOH A 291 23.800 25.460 37.582 1.00 78.17 O HETATM 1248 O HOH A 292 35.423 37.238 67.845 1.00 50.54 O HETATM 1249 O HOH A 293 40.500 15.519 37.526 1.00 81.41 O HETATM 1250 O HOH A 294 31.722 43.322 40.385 1.00 78.45 O HETATM 1251 O HOH A 295 47.867 25.505 63.612 1.00101.67 O HETATM 1252 O HOH A 296 21.708 21.677 56.501 1.00 71.03 O HETATM 1253 O HOH A 297 32.997 20.775 39.090 1.00 73.32 O HETATM 1254 O HOH A 298 24.808 25.830 51.413 1.00 67.61 O HETATM 1255 O HOH A 299 27.522 16.736 54.322 1.00 52.55 O CONECT 376 381 CONECT 381 376 382 CONECT 382 381 383 385 CONECT 383 382 384 389 CONECT 384 383 CONECT 385 382 386 CONECT 386 385 387 CONECT 387 386 388 CONECT 388 387 CONECT 389 383 CONECT 610 616 CONECT 616 610 617 CONECT 617 616 618 620 CONECT 618 617 619 624 CONECT 619 618 CONECT 620 617 621 CONECT 621 620 622 CONECT 622 621 623 CONECT 623 622 CONECT 624 618 CONECT 887 892 CONECT 892 887 893 CONECT 893 892 894 896 CONECT 894 893 895 900 CONECT 895 894 CONECT 896 893 897 CONECT 897 896 898 CONECT 898 897 899 CONECT 899 898 CONECT 900 894 CONECT 1190 1192 CONECT 1191 1192 CONECT 1192 1190 1191 1193 CONECT 1193 1192 1194 1195 CONECT 1194 1193 CONECT 1195 1193 1196 1197 CONECT 1196 1195 CONECT 1197 1195 1198 1199 CONECT 1198 1197 CONECT 1199 1197 CONECT 1200 1201 CONECT 1201 1200 1202 1203 CONECT 1202 1201 CONECT 1203 1201 MASTER 442 0 5 4 8 0 4 6 1215 1 44 19 END