HEADER TRANSFERASE 15-SEP-07 2RAH TITLE HUMAN FDPS SYNTHASE IN COMPLEX WITH NOVEL INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FPP SYNTHETASE, FPS, FARNESYL DIPHOSPHATE SYNTHETASE; COMPND 5 EC: 2.5.1.1, 2.5.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P11 KEYWDS MAINLY ALPHA, ORTHOGONAL BUNDLE, OSTEOPOROSIS, CHOLESTEROL KEYWDS 2 BIOSYNTHESIS, CYTOPLASM, HOST-VIRUS INTERACTION, ISOPRENE KEYWDS 3 BIOSYNTHESIS, LIPID SYNTHESIS, STEROID BIOSYNTHESIS, STEROL KEYWDS 4 BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.G.EVDOKIMOV,B.L.BARNETT,F.H.EBETINO,M.POKROSS REVDAT 3 30-AUG-23 2RAH 1 SEQADV LINK REVDAT 2 24-FEB-09 2RAH 1 VERSN REVDAT 1 25-SEP-07 2RAH 0 JRNL AUTH A.G.EVDOKIMOV,B.L.BARNETT,F.H.EBETINO,M.POKROSS JRNL TITL HUMAN FDPS SYNTHASE IN COMPLEX WITH NOVEL INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 26558 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1355 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1147 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.43000 REMARK 3 B22 (A**2) : -2.43000 REMARK 3 B33 (A**2) : 4.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.215 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.730 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2867 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3898 ; 1.188 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 9.811 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;36.947 ;24.861 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 501 ;18.624 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;20.279 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2181 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1382 ; 0.243 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2009 ; 0.324 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 131 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.258 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1735 ; 1.469 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2752 ; 2.325 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1272 ; 3.679 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1141 ; 5.375 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RAH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRROR/SLIT REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26598 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1ZW5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 15% REMARK 280 ISOPROPANOL, 15% ETHYLENE GLYCOL, PH 4.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.22000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.58550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.58550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.61000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.58550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.58550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.83000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.58550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.58550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.61000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.58550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.58550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.83000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.22000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 35.22000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -24 REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 SER A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 ARG A -11 REMARK 465 GLU A -10 REMARK 465 ASN A -9 REMARK 465 LEU A -8 REMARK 465 TYR A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 LYS A 350 REMARK 465 ARG A 351 REMARK 465 ARG A 352 REMARK 465 LYS A 353 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 172 CD2 LEU A 175 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 30 40.73 -82.84 REMARK 500 VAL A 124 -75.90 -105.32 REMARK 500 ASP A 184 94.30 -173.52 REMARK 500 THR A 201 -46.99 -130.50 REMARK 500 PHE A 206 -53.58 -125.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 334 PRO A 335 42.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 354 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 243 OD2 REMARK 620 2 11P A 356 O8 95.5 REMARK 620 3 11P A 356 O7 100.2 81.7 REMARK 620 4 HOH A 364 O 84.6 91.6 172.1 REMARK 620 5 HOH A 365 O 175.4 85.2 84.4 90.8 REMARK 620 6 HOH A 468 O 83.7 175.9 94.4 92.3 95.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZW5 RELATED DB: PDB REMARK 900 FDPS WITH ZOLEDRONATE/IPP DBREF 2RAH A 1 353 UNP P14324 FPPS_HUMAN 1 353 SEQADV 2RAH MET A -24 UNP P14324 EXPRESSION TAG SEQADV 2RAH GLY A -23 UNP P14324 EXPRESSION TAG SEQADV 2RAH SER A -22 UNP P14324 EXPRESSION TAG SEQADV 2RAH SER A -21 UNP P14324 EXPRESSION TAG SEQADV 2RAH HIS A -20 UNP P14324 EXPRESSION TAG SEQADV 2RAH HIS A -19 UNP P14324 EXPRESSION TAG SEQADV 2RAH HIS A -18 UNP P14324 EXPRESSION TAG SEQADV 2RAH HIS A -17 UNP P14324 EXPRESSION TAG SEQADV 2RAH HIS A -16 UNP P14324 EXPRESSION TAG SEQADV 2RAH HIS A -15 UNP P14324 EXPRESSION TAG SEQADV 2RAH SER A -14 UNP P14324 EXPRESSION TAG SEQADV 2RAH SER A -13 UNP P14324 EXPRESSION TAG SEQADV 2RAH GLY A -12 UNP P14324 EXPRESSION TAG SEQADV 2RAH ARG A -11 UNP P14324 EXPRESSION TAG SEQADV 2RAH GLU A -10 UNP P14324 EXPRESSION TAG SEQADV 2RAH ASN A -9 UNP P14324 EXPRESSION TAG SEQADV 2RAH LEU A -8 UNP P14324 EXPRESSION TAG SEQADV 2RAH TYR A -7 UNP P14324 EXPRESSION TAG SEQADV 2RAH PHE A -6 UNP P14324 EXPRESSION TAG SEQADV 2RAH GLN A -5 UNP P14324 EXPRESSION TAG SEQADV 2RAH GLY A -4 UNP P14324 EXPRESSION TAG SEQADV 2RAH HIS A -3 UNP P14324 EXPRESSION TAG SEQADV 2RAH MET A -2 UNP P14324 EXPRESSION TAG SEQADV 2RAH GLY A -1 UNP P14324 EXPRESSION TAG SEQADV 2RAH HIS A 0 UNP P14324 EXPRESSION TAG SEQRES 1 A 378 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 378 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET GLY HIS MET SEQRES 3 A 378 ASN GLY ASP GLN ASN SER ASP VAL TYR ALA GLN GLU LYS SEQRES 4 A 378 GLN ASP PHE VAL GLN HIS PHE SER GLN ILE VAL ARG VAL SEQRES 5 A 378 LEU THR GLU ASP GLU MET GLY HIS PRO GLU ILE GLY ASP SEQRES 6 A 378 ALA ILE ALA ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA SEQRES 7 A 378 ILE GLY GLY LYS TYR ASN ARG GLY LEU THR VAL VAL VAL SEQRES 8 A 378 ALA PHE ARG GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA SEQRES 9 A 378 ASP SER LEU GLN ARG ALA TRP THR VAL GLY TRP CYS VAL SEQRES 10 A 378 GLU LEU LEU GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE SEQRES 11 A 378 MET ASP SER SER LEU THR ARG ARG GLY GLN ILE CYS TRP SEQRES 12 A 378 TYR GLN LYS PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP SEQRES 13 A 378 ALA ASN LEU LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS SEQRES 14 A 378 LEU TYR CYS ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE SEQRES 15 A 378 GLU LEU PHE LEU GLN SER SER TYR GLN THR GLU ILE GLY SEQRES 16 A 378 GLN THR LEU ASP LEU LEU THR ALA PRO GLN GLY ASN VAL SEQRES 17 A 378 ASP LEU VAL ARG PHE THR GLU LYS ARG TYR LYS SER ILE SEQRES 18 A 378 VAL LYS TYR LYS THR ALA PHE TYR SER PHE TYR LEU PRO SEQRES 19 A 378 ILE ALA ALA ALA MET TYR MET ALA GLY ILE ASP GLY GLU SEQRES 20 A 378 LYS GLU HIS ALA ASN ALA LYS LYS ILE LEU LEU GLU MET SEQRES 21 A 378 GLY GLU PHE PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU SEQRES 22 A 378 PHE GLY ASP PRO SER VAL THR GLY LYS ILE GLY THR ASP SEQRES 23 A 378 ILE GLN ASP ASN LYS CYS SER TRP LEU VAL VAL GLN CYS SEQRES 24 A 378 LEU GLN ARG ALA THR PRO GLU GLN TYR GLN ILE LEU LYS SEQRES 25 A 378 GLU ASN TYR GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG SEQRES 26 A 378 VAL LYS ALA LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL SEQRES 27 A 378 PHE LEU GLN TYR GLU GLU ASP SER TYR SER HIS ILE MET SEQRES 28 A 378 ALA LEU ILE GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA SEQRES 29 A 378 VAL PHE LEU GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG SEQRES 30 A 378 LYS HET MG A 354 1 HET SO4 A 355 5 HET 11P A 356 19 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM 11P [(7R)-6,7-DIHYDRO-5H-CYCLOPENTA[C]PYRIDIN-7- HETNAM 2 11P YL(HYDROXY)METHYLENE]BIS(PHOSPHONIC ACID) FORMUL 2 MG MG 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 11P C9 H13 N O7 P2 FORMUL 5 HOH *113(H2 O) HELIX 1 1 ASP A 8 HIS A 20 1 13 HELIX 2 2 HIS A 20 GLU A 30 1 11 HELIX 3 3 HIS A 35 GLU A 37 5 3 HELIX 4 4 ILE A 38 ALA A 53 1 16 HELIX 5 5 TYR A 58 VAL A 72 1 15 HELIX 6 6 ASP A 78 ASP A 107 1 30 HELIX 7 7 TRP A 118 LYS A 121 5 4 HELIX 8 8 VAL A 124 LEU A 126 5 3 HELIX 9 9 ASP A 127 ARG A 148 1 22 HELIX 10 10 TYR A 152 ALA A 178 1 27 HELIX 11 11 ASP A 184 PHE A 188 5 5 HELIX 12 12 THR A 189 THR A 201 1 13 HELIX 13 13 THR A 201 PHE A 206 1 6 HELIX 14 14 PHE A 206 ALA A 217 1 12 HELIX 15 15 GLY A 221 GLY A 250 1 30 HELIX 16 16 ASP A 251 GLY A 256 1 6 HELIX 17 17 SER A 268 ALA A 278 1 11 HELIX 18 18 THR A 279 TYR A 290 1 12 HELIX 19 19 GLU A 294 LEU A 308 1 15 HELIX 20 20 ASP A 309 ALA A 333 1 25 HELIX 21 21 PRO A 337 TYR A 349 1 13 SHEET 1 A 2 THR A 111 ARG A 112 0 SHEET 2 A 2 GLN A 115 ILE A 116 -1 O GLN A 115 N ARG A 112 LINK OD2 ASP A 243 MG MG A 354 1555 1555 2.15 LINK MG MG A 354 O8 11P A 356 1555 1555 2.04 LINK MG MG A 354 O7 11P A 356 1555 1555 2.05 LINK MG MG A 354 O HOH A 364 1555 1555 2.16 LINK MG MG A 354 O HOH A 365 1555 1555 2.11 LINK MG MG A 354 O HOH A 468 1555 1555 1.99 CRYST1 111.171 111.171 70.440 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008995 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014196 0.00000