HEADER TRANSFERASE 18-SEP-07 2RBC TITLE CRYSTAL STRUCTURE OF A PUTATIVE RIBOKINASE FROM AGROBACTERIUM TITLE 2 TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AGR_C_4560P; COMPND 5 EC: 2.7.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 ATCC: 33970; SOURCE 6 GENE: RBSK, AGR_C_4560, ATU2509; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MODIFIED P11 KEYWDS SUGAR KINASE, RIBOKINASE FAMILY, ATP-BINDING SITE, STRUCTURAL KEYWDS 2 GENOMICS, AGROBACTERIUM TUMEFACIENS, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,X.XU,H.ZHENG,A.M.EDWARDS,A.SAVCHENKO,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 25-OCT-17 2RBC 1 REMARK REVDAT 3 13-JUL-11 2RBC 1 VERSN REVDAT 2 24-FEB-09 2RBC 1 VERSN REVDAT 1 13-NOV-07 2RBC 0 JRNL AUTH M.E.CUFF,X.XU,H.ZHENG,A.M.EDWARDS,A.SAVCHENKO,A.JOACHIMIAK JRNL TITL STRUCTURE OF A PUTATIVE RIBOKINASE FROM AGROBACTERIUM JRNL TITL 2 TUMEFACIENS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 35713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1802 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2417 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2295 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 400 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -1.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.809 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2480 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1648 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3379 ; 1.490 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4015 ; 0.944 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 325 ; 6.106 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;29.518 ;23.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 391 ;12.603 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;13.459 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2800 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 496 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 523 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1838 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1215 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1332 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 298 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1885 ; 1.304 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 643 ; 0.231 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2541 ; 1.327 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 979 ; 2.678 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 838 ; 3.575 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 311 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4041 0.1285 19.7446 REMARK 3 T TENSOR REMARK 3 T11: -0.0755 T22: -0.0828 REMARK 3 T33: -0.0735 T12: 0.0051 REMARK 3 T13: 0.0019 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.9520 L22: 0.6633 REMARK 3 L33: 1.5371 L12: 0.3421 REMARK 3 L13: -0.3958 L23: -0.3053 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: -0.0107 S13: 0.0536 REMARK 3 S21: 0.0214 S22: 0.0080 S23: 0.0279 REMARK 3 S31: 0.0215 S32: -0.0294 S33: -0.0538 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE BIJVOET DIFFERENCES WERE USED IN REMARK 3 PHASING. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 2RBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044654. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97873, 0.97886 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69844 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.23500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 5.0, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, 1.5M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.89950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.51200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.51200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.84925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.51200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.51200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.94975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.51200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.51200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 104.84925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.51200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.51200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.94975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.89950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN, AND THAT PROBABLY IT IS A DIMER SHOWN IN REMARK 350. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 69.89950 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 327 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 PRO A 5 REMARK 465 SER A 312 REMARK 465 GLU A 313 REMARK 465 PRO A 314 REMARK 465 ALA A 315 REMARK 465 LEU A 316 REMARK 465 ARG A 317 REMARK 465 ALA A 318 REMARK 465 SER A 319 REMARK 465 GLY A 320 REMARK 465 SER A 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 458 O HOH A 640 2.10 REMARK 500 O HOH A 469 O HOH A 662 2.11 REMARK 500 O HOH A 503 O HOH A 680 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 44 -147.41 -155.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 329 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 333 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6153 RELATED DB: TARGETDB DBREF 2RBC A 1 319 UNP Q8UCH8 Q8UCH8_AGRT5 1 319 SEQADV 2RBC MSE A -21 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC GLY A -20 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC SER A -19 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC SER A -18 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC HIS A -17 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC HIS A -16 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC HIS A -15 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC HIS A -14 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC HIS A -13 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC HIS A -12 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC SER A -11 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC SER A -10 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC GLY A -9 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC ARG A -8 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC GLU A -7 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC ASN A -6 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC LEU A -5 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC TYR A -4 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC PHE A -3 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC GLN A -2 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC GLY A -1 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC HIS A 0 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC GLY A 320 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC SER A 321 UNP Q8UCH8 EXPRESSION TAG SEQRES 1 A 343 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 343 ARG GLU ASN LEU TYR PHE GLN GLY HIS MSE VAL LYS GLU SEQRES 3 A 343 PRO GLY GLY LYS HIS VAL LEU CYS VAL GLY ALA ALA VAL SEQRES 4 A 343 LEU ASP THR LEU PHE ARG VAL ALA ASP MSE PRO LYS GLY SEQRES 5 A 343 GLU GLY LYS VAL LEU PRO TYR GLU VAL LEU GLN ILE ALA SEQRES 6 A 343 GLU GLY MSE ALA SER SER ALA ALA TYR ALA VAL HIS ARG SEQRES 7 A 343 MSE GLY GLY ARG ALA SER LEU TRP GLY ALA VAL GLY ASP SEQRES 8 A 343 ASP GLU THR GLY THR ARG ILE LEU ARG ASP LEU SER GLU SEQRES 9 A 343 SER GLY ILE ASP THR SER GLY MSE THR VAL ALA PRO GLY SEQRES 10 A 343 ALA ARG SER ALA LEU SER THR ILE ILE ILE ASP ASN ARG SEQRES 11 A 343 GLY GLU ARG LEU ILE VAL PRO PHE TYR ASP HIS ARG LEU SEQRES 12 A 343 HIS GLU LYS LYS ARG ALA CYS THR PRO GLU ASP ILE ALA SEQRES 13 A 343 LEU PHE ASP ALA VAL LEU VAL ASP VAL ARG TRP PRO GLU SEQRES 14 A 343 LEU ALA LEU ASP VAL LEU THR VAL ALA ARG ALA LEU GLY SEQRES 15 A 343 LYS PRO ALA ILE LEU ASP GLY ASP VAL ALA PRO VAL GLU SEQRES 16 A 343 THR LEU GLU GLY LEU ALA PRO ALA ALA THR HIS ILE VAL SEQRES 17 A 343 PHE SER GLU PRO ALA ALA THR ARG LEU THR GLY LEU GLU SEQRES 18 A 343 THR VAL LYS ASP MSE LEU PRO VAL LEU HIS ALA ARG TYR SEQRES 19 A 343 PRO GLN THR PHE ILE ALA VAL THR ALA GLY PRO ALA GLY SEQRES 20 A 343 CYS TRP TRP THR GLU ALA ASP ASP PRO THR VAL HIS PHE SEQRES 21 A 343 GLN THR THR MSE GLN VAL GLU ALA VAL ASP THR LEU ALA SEQRES 22 A 343 ALA GLY ASP ILE PHE HIS GLY THR PHE ALA LEU ALA MSE SEQRES 23 A 343 ALA GLU GLY MSE GLN SER ARG ALA ALA VAL ARG LEU SER SEQRES 24 A 343 SER VAL ALA ALA ALA LEU LYS CYS THR VAL PHE GLY GLY SEQRES 25 A 343 ARG ILE GLY ALA PRO THR ARG GLU GLU THR GLU GLU ALA SEQRES 26 A 343 MSE ARG GLN TRP LEU GLU ARG GLU SER GLU PRO ALA LEU SEQRES 27 A 343 ARG ALA SER GLY SER MODRES 2RBC MSE A 27 MET SELENOMETHIONINE MODRES 2RBC MSE A 46 MET SELENOMETHIONINE MODRES 2RBC MSE A 57 MET SELENOMETHIONINE MODRES 2RBC MSE A 90 MET SELENOMETHIONINE MODRES 2RBC MSE A 204 MET SELENOMETHIONINE MODRES 2RBC MSE A 242 MET SELENOMETHIONINE MODRES 2RBC MSE A 264 MET SELENOMETHIONINE MODRES 2RBC MSE A 268 MET SELENOMETHIONINE MODRES 2RBC MSE A 304 MET SELENOMETHIONINE HET MSE A 27 8 HET MSE A 46 8 HET MSE A 57 8 HET MSE A 90 16 HET MSE A 204 8 HET MSE A 242 8 HET MSE A 264 8 HET MSE A 268 8 HET MSE A 304 8 HET SO4 A 322 5 HET SO4 A 323 5 HET SO4 A 324 5 HET SO4 A 325 5 HET SO4 A 326 5 HET CL A 327 1 HET EDO A 328 4 HET EDO A 329 4 HET EDO A 330 4 HET EDO A 331 4 HET EDO A 332 4 HET GOL A 333 12 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 CL CL 1- FORMUL 8 EDO 5(C2 H6 O2) FORMUL 13 GOL C3 H8 O3 FORMUL 14 HOH *400(H2 O) HELIX 1 1 GLY A 45 MSE A 57 1 13 HELIX 2 2 ASP A 70 SER A 83 1 14 HELIX 3 3 ASP A 118 GLU A 123 5 6 HELIX 4 4 THR A 129 ALA A 134 1 6 HELIX 5 5 TRP A 145 LEU A 159 1 15 HELIX 6 6 PRO A 171 ALA A 179 1 9 HELIX 7 7 PRO A 180 ALA A 182 5 3 HELIX 8 8 GLU A 189 GLY A 197 1 9 HELIX 9 9 THR A 200 TYR A 212 1 13 HELIX 10 10 GLY A 222 ALA A 224 5 3 HELIX 11 11 ALA A 251 GLU A 266 1 16 HELIX 12 12 GLN A 269 THR A 286 1 18 HELIX 13 13 GLY A 289 ALA A 294 5 6 HELIX 14 14 THR A 296 GLU A 309 1 14 SHEET 1 A 9 ILE A 85 ASP A 86 0 SHEET 2 A 9 ARG A 60 TRP A 64 1 N ALA A 61 O ASP A 86 SHEET 3 A 9 HIS A 9 VAL A 13 1 N CYS A 12 O SER A 62 SHEET 4 A 9 ALA A 138 VAL A 141 1 O LEU A 140 N LEU A 11 SHEET 5 A 9 ALA A 163 GLY A 167 1 O ASP A 166 N VAL A 141 SHEET 6 A 9 HIS A 184 SER A 188 1 O VAL A 186 N LEU A 165 SHEET 7 A 9 PHE A 216 THR A 220 1 O ALA A 218 N PHE A 187 SHEET 8 A 9 CYS A 226 THR A 229 -1 O TRP A 227 N VAL A 219 SHEET 9 A 9 VAL A 236 GLN A 239 -1 O HIS A 237 N TRP A 228 SHEET 1 B 4 GLU A 38 GLU A 44 0 SHEET 2 B 4 VAL A 17 ARG A 23 -1 N LEU A 21 O LEU A 40 SHEET 3 B 4 ALA A 99 ILE A 105 1 O ILE A 103 N THR A 20 SHEET 4 B 4 ARG A 111 PHE A 116 -1 O PHE A 116 N LEU A 100 SHEET 1 C 2 ALA A 66 GLY A 68 0 SHEET 2 C 2 THR A 91 ALA A 93 1 O ALA A 93 N VAL A 67 LINK C ASP A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N PRO A 28 1555 1555 1.34 LINK C GLY A 45 N MSE A 46 1555 1555 1.33 LINK C MSE A 46 N ALA A 47 1555 1555 1.33 LINK C ARG A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N GLY A 58 1555 1555 1.32 LINK C GLY A 89 N AMSE A 90 1555 1555 1.33 LINK C GLY A 89 N BMSE A 90 1555 1555 1.33 LINK C AMSE A 90 N THR A 91 1555 1555 1.33 LINK C BMSE A 90 N THR A 91 1555 1555 1.32 LINK C ASP A 203 N MSE A 204 1555 1555 1.32 LINK C MSE A 204 N LEU A 205 1555 1555 1.33 LINK C THR A 241 N MSE A 242 1555 1555 1.33 LINK C MSE A 242 N GLN A 243 1555 1555 1.32 LINK C ALA A 263 N MSE A 264 1555 1555 1.34 LINK C MSE A 264 N ALA A 265 1555 1555 1.32 LINK C GLY A 267 N MSE A 268 1555 1555 1.32 LINK C MSE A 268 N GLN A 269 1555 1555 1.34 LINK C ALA A 303 N MSE A 304 1555 1555 1.33 LINK C MSE A 304 N ARG A 305 1555 1555 1.33 SITE 1 AC1 9 GLN A 239 THR A 240 ARG A 275 TRP A 307 SITE 2 AC1 9 LEU A 308 ARG A 310 HOH A 386 HOH A 610 SITE 3 AC1 9 HOH A 631 SITE 1 AC2 6 TRP A 228 HIS A 237 ARG A 271 HOH A 584 SITE 2 AC2 6 HOH A 595 HOH A 658 SITE 1 AC3 5 ARG A 56 HOH A 510 HOH A 571 HOH A 661 SITE 2 AC3 5 HOH A 668 SITE 1 AC4 4 PRO A 171 VAL A 172 GLU A 173 ARG A 194 SITE 1 AC5 2 ARG A 97 ARG A 120 SITE 1 AC6 1 ARG A 75 SITE 1 AC7 5 THR A 20 LEU A 100 SER A 101 THR A 102 SITE 2 AC7 5 HOH A 350 SITE 1 AC8 4 ALA A 127 THR A 129 ASP A 132 HOH A 561 SITE 1 AC9 4 GLY A 89 MSE A 90 THR A 91 HOH A 719 SITE 1 BC1 8 THR A 220 ALA A 221 GLY A 222 GLY A 225 SITE 2 BC1 8 PHE A 256 SER A 278 HOH A 374 HOH A 732 SITE 1 BC2 3 ARG A 111 THR A 249 HOH A 440 SITE 1 BC3 9 VAL A 17 ASP A 19 SER A 101 ILE A 113 SITE 2 BC3 9 HOH A 334 HOH A 457 HOH A 576 HOH A 580 SITE 3 BC3 9 HOH A 723 CRYST1 81.024 81.024 139.799 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012342 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012342 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007153 0.00000