data_2RBI # _entry.id 2RBI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2RBI pdb_00002rbi 10.2210/pdb2rbi/pdb WWPDB D_1000178549 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-03-12 2 'Structure model' 1 1 2008-03-25 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-03 5 'Structure model' 1 4 2024-02-21 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' Other 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Data collection' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' software 4 4 'Structure model' struct_ref_seq_dif 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_software.name' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2RBI _pdbx_database_status.recvd_initial_deposition_date 1996-11-12 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Offen, W.A.' 1 'Okorokov, A.L.' 2 # _citation.id primary _citation.title 'RNA cleavage without hydrolysis. Splitting the catalytic activities of binase with Asn101 and Thr101 mutations.' _citation.journal_abbrev 'Protein Eng.' _citation.journal_volume 10 _citation.page_first 273 _citation.page_last 278 _citation.year 1997 _citation.journal_id_ASTM PRENE9 _citation.country UK _citation.journal_id_ISSN 0269-2139 _citation.journal_id_CSD 0859 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9153077 _citation.pdbx_database_id_DOI 10.1093/protein/10.3.273 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Okorokov, A.L.' 1 ? primary 'Panov, K.I.' 2 ? primary 'Offen, W.A.' 3 ? primary 'Mukhortov, V.G.' 4 ? primary 'Antson, A.A.' 5 ? primary 'Karpeisky, M.Y.a.' 6 ? primary 'Wilkinson, A.J.' 7 ? primary 'Dodson, G.G.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man RIBONUCLEASE 12203.579 2 3.1.27.- H101N ? ? 2 water nat water 18.015 229 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BINASE, EXTRACELLULAR RIBONUCLEASE FROM BACILLUS INTERMEDIUS' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AVINTFDGVADYLIRYKRLPDNYITKSQASALGWVASKGNLAEVAPGKSIGGDVFSNREGRLPSASGRTWREADINYVSG FRNADRLVYSSDWLIYKTTDNYATFTRIR ; _entity_poly.pdbx_seq_one_letter_code_can ;AVINTFDGVADYLIRYKRLPDNYITKSQASALGWVASKGNLAEVAPGKSIGGDVFSNREGRLPSASGRTWREADINYVSG FRNADRLVYSSDWLIYKTTDNYATFTRIR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 VAL n 1 3 ILE n 1 4 ASN n 1 5 THR n 1 6 PHE n 1 7 ASP n 1 8 GLY n 1 9 VAL n 1 10 ALA n 1 11 ASP n 1 12 TYR n 1 13 LEU n 1 14 ILE n 1 15 ARG n 1 16 TYR n 1 17 LYS n 1 18 ARG n 1 19 LEU n 1 20 PRO n 1 21 ASP n 1 22 ASN n 1 23 TYR n 1 24 ILE n 1 25 THR n 1 26 LYS n 1 27 SER n 1 28 GLN n 1 29 ALA n 1 30 SER n 1 31 ALA n 1 32 LEU n 1 33 GLY n 1 34 TRP n 1 35 VAL n 1 36 ALA n 1 37 SER n 1 38 LYS n 1 39 GLY n 1 40 ASN n 1 41 LEU n 1 42 ALA n 1 43 GLU n 1 44 VAL n 1 45 ALA n 1 46 PRO n 1 47 GLY n 1 48 LYS n 1 49 SER n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 ASP n 1 54 VAL n 1 55 PHE n 1 56 SER n 1 57 ASN n 1 58 ARG n 1 59 GLU n 1 60 GLY n 1 61 ARG n 1 62 LEU n 1 63 PRO n 1 64 SER n 1 65 ALA n 1 66 SER n 1 67 GLY n 1 68 ARG n 1 69 THR n 1 70 TRP n 1 71 ARG n 1 72 GLU n 1 73 ALA n 1 74 ASP n 1 75 ILE n 1 76 ASN n 1 77 TYR n 1 78 VAL n 1 79 SER n 1 80 GLY n 1 81 PHE n 1 82 ARG n 1 83 ASN n 1 84 ALA n 1 85 ASP n 1 86 ARG n 1 87 LEU n 1 88 VAL n 1 89 TYR n 1 90 SER n 1 91 SER n 1 92 ASP n 1 93 TRP n 1 94 LEU n 1 95 ILE n 1 96 TYR n 1 97 LYS n 1 98 THR n 1 99 THR n 1 100 ASP n 1 101 ASN n 1 102 TYR n 1 103 ALA n 1 104 THR n 1 105 PHE n 1 106 THR n 1 107 ARG n 1 108 ILE n 1 109 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene 'PHOA-BINASE HIS101ASN' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 7P _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus intermedius' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1400 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene 'PHOA-BINASE HIS101ASN' _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ;EPICURIAN COLI STRAIN XL-1 BLUE MRF' ; _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'PR LAMDA PHAGE PROMOTER UNDER CI-TS REGULATION' _entity_src_gen.pdbx_host_org_vector PBIT36 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PEXBINN101 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'BINASE GENE CO-EXPRESSED AS FUSION PROTEIN WITH ALKALINE PHOSPHATASE TO ENABLE EXPORT INTO PERIPLASMIC SPACE' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 ? ? ? A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 TRP 34 34 34 TRP TRP A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 TRP 70 70 70 TRP TRP A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 TRP 93 93 93 TRP TRP A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 ARG 109 109 109 ARG ARG A . n B 1 1 ALA 1 1 ? ? ? B . n B 1 2 VAL 2 2 2 VAL VAL B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 ASN 4 4 4 ASN ASN B . n B 1 5 THR 5 5 5 THR THR B . n B 1 6 PHE 6 6 6 PHE PHE B . n B 1 7 ASP 7 7 7 ASP ASP B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 VAL 9 9 9 VAL VAL B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 ASP 11 11 11 ASP ASP B . n B 1 12 TYR 12 12 12 TYR TYR B . n B 1 13 LEU 13 13 13 LEU LEU B . n B 1 14 ILE 14 14 14 ILE ILE B . n B 1 15 ARG 15 15 15 ARG ARG B . n B 1 16 TYR 16 16 16 TYR TYR B . n B 1 17 LYS 17 17 17 LYS LYS B . n B 1 18 ARG 18 18 18 ARG ARG B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 PRO 20 20 20 PRO PRO B . n B 1 21 ASP 21 21 21 ASP ASP B . n B 1 22 ASN 22 22 22 ASN ASN B . n B 1 23 TYR 23 23 23 TYR TYR B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 THR 25 25 25 THR THR B . n B 1 26 LYS 26 26 26 LYS LYS B . n B 1 27 SER 27 27 27 SER SER B . n B 1 28 GLN 28 28 28 GLN GLN B . n B 1 29 ALA 29 29 29 ALA ALA B . n B 1 30 SER 30 30 30 SER SER B . n B 1 31 ALA 31 31 31 ALA ALA B . n B 1 32 LEU 32 32 32 LEU LEU B . n B 1 33 GLY 33 33 33 GLY GLY B . n B 1 34 TRP 34 34 34 TRP TRP B . n B 1 35 VAL 35 35 35 VAL VAL B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 LYS 38 38 38 LYS LYS B . n B 1 39 GLY 39 39 39 GLY GLY B . n B 1 40 ASN 40 40 40 ASN ASN B . n B 1 41 LEU 41 41 41 LEU LEU B . n B 1 42 ALA 42 42 42 ALA ALA B . n B 1 43 GLU 43 43 43 GLU GLU B . n B 1 44 VAL 44 44 44 VAL VAL B . n B 1 45 ALA 45 45 45 ALA ALA B . n B 1 46 PRO 46 46 46 PRO PRO B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 LYS 48 48 48 LYS LYS B . n B 1 49 SER 49 49 49 SER SER B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 ASP 53 53 53 ASP ASP B . n B 1 54 VAL 54 54 54 VAL VAL B . n B 1 55 PHE 55 55 55 PHE PHE B . n B 1 56 SER 56 56 56 SER SER B . n B 1 57 ASN 57 57 57 ASN ASN B . n B 1 58 ARG 58 58 58 ARG ARG B . n B 1 59 GLU 59 59 59 GLU GLU B . n B 1 60 GLY 60 60 60 GLY GLY B . n B 1 61 ARG 61 61 61 ARG ARG B . n B 1 62 LEU 62 62 62 LEU LEU B . n B 1 63 PRO 63 63 63 PRO PRO B . n B 1 64 SER 64 64 64 SER SER B . n B 1 65 ALA 65 65 65 ALA ALA B . n B 1 66 SER 66 66 66 SER SER B . n B 1 67 GLY 67 67 67 GLY GLY B . n B 1 68 ARG 68 68 68 ARG ARG B . n B 1 69 THR 69 69 69 THR THR B . n B 1 70 TRP 70 70 70 TRP TRP B . n B 1 71 ARG 71 71 71 ARG ARG B . n B 1 72 GLU 72 72 72 GLU GLU B . n B 1 73 ALA 73 73 73 ALA ALA B . n B 1 74 ASP 74 74 74 ASP ASP B . n B 1 75 ILE 75 75 75 ILE ILE B . n B 1 76 ASN 76 76 76 ASN ASN B . n B 1 77 TYR 77 77 77 TYR TYR B . n B 1 78 VAL 78 78 78 VAL VAL B . n B 1 79 SER 79 79 79 SER SER B . n B 1 80 GLY 80 80 80 GLY GLY B . n B 1 81 PHE 81 81 81 PHE PHE B . n B 1 82 ARG 82 82 82 ARG ARG B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 ALA 84 84 84 ALA ALA B . n B 1 85 ASP 85 85 85 ASP ASP B . n B 1 86 ARG 86 86 86 ARG ARG B . n B 1 87 LEU 87 87 87 LEU LEU B . n B 1 88 VAL 88 88 88 VAL VAL B . n B 1 89 TYR 89 89 89 TYR TYR B . n B 1 90 SER 90 90 90 SER SER B . n B 1 91 SER 91 91 91 SER SER B . n B 1 92 ASP 92 92 92 ASP ASP B . n B 1 93 TRP 93 93 93 TRP TRP B . n B 1 94 LEU 94 94 94 LEU LEU B . n B 1 95 ILE 95 95 95 ILE ILE B . n B 1 96 TYR 96 96 96 TYR TYR B . n B 1 97 LYS 97 97 97 LYS LYS B . n B 1 98 THR 98 98 98 THR THR B . n B 1 99 THR 99 99 99 THR THR B . n B 1 100 ASP 100 100 100 ASP ASP B . n B 1 101 ASN 101 101 101 ASN ASN B . n B 1 102 TYR 102 102 102 TYR TYR B . n B 1 103 ALA 103 103 103 ALA ALA B . n B 1 104 THR 104 104 104 THR THR B . n B 1 105 PHE 105 105 105 PHE PHE B . n B 1 106 THR 106 106 106 THR THR B . n B 1 107 ARG 107 107 107 ARG ARG B . n B 1 108 ILE 108 108 108 ILE ILE B . n B 1 109 ARG 109 109 109 ARG ARG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 110 1 HOH HOH A . C 2 HOH 2 111 2 HOH HOH A . C 2 HOH 3 112 6 HOH HOH A . C 2 HOH 4 113 8 HOH HOH A . C 2 HOH 5 114 9 HOH HOH A . C 2 HOH 6 115 10 HOH HOH A . C 2 HOH 7 116 13 HOH HOH A . C 2 HOH 8 117 14 HOH HOH A . C 2 HOH 9 118 16 HOH HOH A . C 2 HOH 10 119 18 HOH HOH A . C 2 HOH 11 120 19 HOH HOH A . C 2 HOH 12 121 22 HOH HOH A . C 2 HOH 13 122 23 HOH HOH A . C 2 HOH 14 123 25 HOH HOH A . C 2 HOH 15 124 27 HOH HOH A . C 2 HOH 16 125 30 HOH HOH A . C 2 HOH 17 126 32 HOH HOH A . C 2 HOH 18 127 34 HOH HOH A . C 2 HOH 19 128 36 HOH HOH A . C 2 HOH 20 129 37 HOH HOH A . C 2 HOH 21 130 41 HOH HOH A . C 2 HOH 22 131 42 HOH HOH A . C 2 HOH 23 132 43 HOH HOH A . C 2 HOH 24 133 44 HOH HOH A . C 2 HOH 25 134 46 HOH HOH A . C 2 HOH 26 135 48 HOH HOH A . C 2 HOH 27 136 50 HOH HOH A . C 2 HOH 28 137 51 HOH HOH A . C 2 HOH 29 138 53 HOH HOH A . C 2 HOH 30 139 54 HOH HOH A . C 2 HOH 31 140 57 HOH HOH A . C 2 HOH 32 141 58 HOH HOH A . C 2 HOH 33 142 59 HOH HOH A . C 2 HOH 34 143 65 HOH HOH A . C 2 HOH 35 144 66 HOH HOH A . C 2 HOH 36 145 69 HOH HOH A . C 2 HOH 37 146 70 HOH HOH A . C 2 HOH 38 147 71 HOH HOH A . C 2 HOH 39 148 74 HOH HOH A . C 2 HOH 40 149 76 HOH HOH A . C 2 HOH 41 150 79 HOH HOH A . C 2 HOH 42 151 85 HOH HOH A . C 2 HOH 43 152 86 HOH HOH A . C 2 HOH 44 153 88 HOH HOH A . C 2 HOH 45 154 90 HOH HOH A . C 2 HOH 46 155 92 HOH HOH A . C 2 HOH 47 156 94 HOH HOH A . C 2 HOH 48 157 96 HOH HOH A . C 2 HOH 49 158 97 HOH HOH A . C 2 HOH 50 159 98 HOH HOH A . C 2 HOH 51 160 100 HOH HOH A . C 2 HOH 52 161 101 HOH HOH A . C 2 HOH 53 162 103 HOH HOH A . C 2 HOH 54 163 110 HOH HOH A . C 2 HOH 55 164 111 HOH HOH A . C 2 HOH 56 165 112 HOH HOH A . C 2 HOH 57 166 114 HOH HOH A . C 2 HOH 58 167 115 HOH HOH A . C 2 HOH 59 168 116 HOH HOH A . C 2 HOH 60 169 118 HOH HOH A . C 2 HOH 61 170 121 HOH HOH A . C 2 HOH 62 171 123 HOH HOH A . C 2 HOH 63 172 125 HOH HOH A . C 2 HOH 64 173 126 HOH HOH A . C 2 HOH 65 174 130 HOH HOH A . C 2 HOH 66 175 131 HOH HOH A . C 2 HOH 67 176 132 HOH HOH A . C 2 HOH 68 177 133 HOH HOH A . C 2 HOH 69 178 134 HOH HOH A . C 2 HOH 70 179 135 HOH HOH A . C 2 HOH 71 180 136 HOH HOH A . C 2 HOH 72 181 138 HOH HOH A . C 2 HOH 73 182 139 HOH HOH A . C 2 HOH 74 183 140 HOH HOH A . C 2 HOH 75 184 141 HOH HOH A . C 2 HOH 76 185 142 HOH HOH A . C 2 HOH 77 186 147 HOH HOH A . C 2 HOH 78 187 150 HOH HOH A . C 2 HOH 79 188 151 HOH HOH A . C 2 HOH 80 189 152 HOH HOH A . C 2 HOH 81 190 154 HOH HOH A . C 2 HOH 82 191 161 HOH HOH A . C 2 HOH 83 192 162 HOH HOH A . C 2 HOH 84 193 164 HOH HOH A . C 2 HOH 85 194 167 HOH HOH A . C 2 HOH 86 195 168 HOH HOH A . C 2 HOH 87 196 169 HOH HOH A . C 2 HOH 88 197 170 HOH HOH A . C 2 HOH 89 198 171 HOH HOH A . C 2 HOH 90 199 174 HOH HOH A . C 2 HOH 91 200 175 HOH HOH A . C 2 HOH 92 201 176 HOH HOH A . C 2 HOH 93 202 178 HOH HOH A . C 2 HOH 94 203 183 HOH HOH A . C 2 HOH 95 204 185 HOH HOH A . C 2 HOH 96 205 188 HOH HOH A . C 2 HOH 97 206 189 HOH HOH A . C 2 HOH 98 207 190 HOH HOH A . C 2 HOH 99 208 192 HOH HOH A . C 2 HOH 100 209 194 HOH HOH A . C 2 HOH 101 210 202 HOH HOH A . C 2 HOH 102 211 203 HOH HOH A . C 2 HOH 103 212 204 HOH HOH A . C 2 HOH 104 213 205 HOH HOH A . C 2 HOH 105 214 206 HOH HOH A . C 2 HOH 106 215 207 HOH HOH A . C 2 HOH 107 216 210 HOH HOH A . C 2 HOH 108 217 212 HOH HOH A . C 2 HOH 109 218 213 HOH HOH A . C 2 HOH 110 219 216 HOH HOH A . C 2 HOH 111 220 219 HOH HOH A . C 2 HOH 112 221 224 HOH HOH A . C 2 HOH 113 222 225 HOH HOH A . C 2 HOH 114 223 227 HOH HOH A . C 2 HOH 115 224 228 HOH HOH A . C 2 HOH 116 225 229 HOH HOH A . D 2 HOH 1 110 3 HOH HOH B . D 2 HOH 2 111 4 HOH HOH B . D 2 HOH 3 112 5 HOH HOH B . D 2 HOH 4 113 7 HOH HOH B . D 2 HOH 5 114 11 HOH HOH B . D 2 HOH 6 115 12 HOH HOH B . D 2 HOH 7 116 15 HOH HOH B . D 2 HOH 8 117 17 HOH HOH B . D 2 HOH 9 118 20 HOH HOH B . D 2 HOH 10 119 21 HOH HOH B . D 2 HOH 11 120 24 HOH HOH B . D 2 HOH 12 121 26 HOH HOH B . D 2 HOH 13 122 28 HOH HOH B . D 2 HOH 14 123 29 HOH HOH B . D 2 HOH 15 124 31 HOH HOH B . D 2 HOH 16 125 33 HOH HOH B . D 2 HOH 17 126 35 HOH HOH B . D 2 HOH 18 127 38 HOH HOH B . D 2 HOH 19 128 39 HOH HOH B . D 2 HOH 20 129 40 HOH HOH B . D 2 HOH 21 130 45 HOH HOH B . D 2 HOH 22 131 47 HOH HOH B . D 2 HOH 23 132 49 HOH HOH B . D 2 HOH 24 133 52 HOH HOH B . D 2 HOH 25 134 55 HOH HOH B . D 2 HOH 26 135 56 HOH HOH B . D 2 HOH 27 136 60 HOH HOH B . D 2 HOH 28 137 61 HOH HOH B . D 2 HOH 29 138 62 HOH HOH B . D 2 HOH 30 139 63 HOH HOH B . D 2 HOH 31 140 64 HOH HOH B . D 2 HOH 32 141 67 HOH HOH B . D 2 HOH 33 142 68 HOH HOH B . D 2 HOH 34 143 72 HOH HOH B . D 2 HOH 35 144 73 HOH HOH B . D 2 HOH 36 145 75 HOH HOH B . D 2 HOH 37 146 77 HOH HOH B . D 2 HOH 38 147 78 HOH HOH B . D 2 HOH 39 148 80 HOH HOH B . D 2 HOH 40 149 81 HOH HOH B . D 2 HOH 41 150 82 HOH HOH B . D 2 HOH 42 151 83 HOH HOH B . D 2 HOH 43 152 84 HOH HOH B . D 2 HOH 44 153 87 HOH HOH B . D 2 HOH 45 154 89 HOH HOH B . D 2 HOH 46 155 91 HOH HOH B . D 2 HOH 47 156 93 HOH HOH B . D 2 HOH 48 157 95 HOH HOH B . D 2 HOH 49 158 99 HOH HOH B . D 2 HOH 50 159 102 HOH HOH B . D 2 HOH 51 160 104 HOH HOH B . D 2 HOH 52 161 105 HOH HOH B . D 2 HOH 53 162 106 HOH HOH B . D 2 HOH 54 163 107 HOH HOH B . D 2 HOH 55 164 108 HOH HOH B . D 2 HOH 56 165 109 HOH HOH B . D 2 HOH 57 166 113 HOH HOH B . D 2 HOH 58 167 117 HOH HOH B . D 2 HOH 59 168 119 HOH HOH B . D 2 HOH 60 169 120 HOH HOH B . D 2 HOH 61 170 122 HOH HOH B . D 2 HOH 62 171 124 HOH HOH B . D 2 HOH 63 172 127 HOH HOH B . D 2 HOH 64 173 128 HOH HOH B . D 2 HOH 65 174 129 HOH HOH B . D 2 HOH 66 175 137 HOH HOH B . D 2 HOH 67 176 143 HOH HOH B . D 2 HOH 68 177 144 HOH HOH B . D 2 HOH 69 178 145 HOH HOH B . D 2 HOH 70 179 146 HOH HOH B . D 2 HOH 71 180 148 HOH HOH B . D 2 HOH 72 181 149 HOH HOH B . D 2 HOH 73 182 153 HOH HOH B . D 2 HOH 74 183 155 HOH HOH B . D 2 HOH 75 184 156 HOH HOH B . D 2 HOH 76 185 157 HOH HOH B . D 2 HOH 77 186 158 HOH HOH B . D 2 HOH 78 187 159 HOH HOH B . D 2 HOH 79 188 160 HOH HOH B . D 2 HOH 80 189 163 HOH HOH B . D 2 HOH 81 190 165 HOH HOH B . D 2 HOH 82 191 166 HOH HOH B . D 2 HOH 83 192 172 HOH HOH B . D 2 HOH 84 193 173 HOH HOH B . D 2 HOH 85 194 177 HOH HOH B . D 2 HOH 86 195 179 HOH HOH B . D 2 HOH 87 196 180 HOH HOH B . D 2 HOH 88 197 181 HOH HOH B . D 2 HOH 89 198 182 HOH HOH B . D 2 HOH 90 199 184 HOH HOH B . D 2 HOH 91 200 186 HOH HOH B . D 2 HOH 92 201 187 HOH HOH B . D 2 HOH 93 202 191 HOH HOH B . D 2 HOH 94 203 193 HOH HOH B . D 2 HOH 95 204 195 HOH HOH B . D 2 HOH 96 205 196 HOH HOH B . D 2 HOH 97 206 197 HOH HOH B . D 2 HOH 98 207 198 HOH HOH B . D 2 HOH 99 208 199 HOH HOH B . D 2 HOH 100 209 200 HOH HOH B . D 2 HOH 101 210 201 HOH HOH B . D 2 HOH 102 211 208 HOH HOH B . D 2 HOH 103 212 209 HOH HOH B . D 2 HOH 104 213 211 HOH HOH B . D 2 HOH 105 214 214 HOH HOH B . D 2 HOH 106 215 215 HOH HOH B . D 2 HOH 107 216 217 HOH HOH B . D 2 HOH 108 217 218 HOH HOH B . D 2 HOH 109 218 220 HOH HOH B . D 2 HOH 110 219 221 HOH HOH B . D 2 HOH 111 220 222 HOH HOH B . D 2 HOH 112 221 223 HOH HOH B . D 2 HOH 113 222 226 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CCP4 'model building' . ? 1 PROLSQ refinement . ? 2 DENZO 'data reduction' . ? 3 CCP4 'data scaling' '(AGROVATA' ? 4 ROTAVATA 'data scaling' . ? 5 CCP4 phasing . ? 6 # _cell.entry_id 2RBI _cell.length_a 111.260 _cell.length_b 69.150 _cell.length_c 33.370 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RBI _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 2RBI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.6 _exptl_crystal.density_percent_sol 52.6 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;VAPOR DIFFUSION METHOD, WITH 12MG/ML BINASE HIS101ASN, 40MM GLYCINE PH 7.5, 8.75% POLYETHYL- ENE GLYCOL MR 10,000 AND 2.5% SATURATED SODIUM CITRATE IN THE HANGING DROP, AND 17.5% PEG 10,000, 60MM GLYCINE PH 7.5 AND 5% SODIUM CITRATE IN WELL. LEFT FOR 2 DAYS AT 18 DEGREES CENTIGRADE., vapor diffusion, temperature 291K ; # _diffrn.id 1 _diffrn.ambient_temp 291 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 1993-10-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'GRAPHITE(002)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2RBI _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.20 _reflns.number_obs 13288 _reflns.number_all ? _reflns.percent_possible_obs 97.2 _reflns.pdbx_Rmerge_I_obs 0.0550000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.5 _reflns.B_iso_Wilson_estimate 19.6 _reflns.pdbx_redundancy 3.9 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.26 _reflns_shell.percent_possible_all 80.7 _reflns_shell.Rmerge_I_obs 0.1960000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_redundancy 2.9 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2RBI _refine.ls_number_reflns_obs 13096 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.0 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 97. _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1780000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 27.4 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'WILD-TYPE BINASE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1718 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 229 _refine_hist.number_atoms_total 1947 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 10.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.015 0.02 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.039 0.035 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d 0.044 0.050 ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it 2.599 4.0 ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it 3.687 6.0 ? ? 'X-RAY DIFFRACTION' ? p_scbond_it 6.103 8.0 ? ? 'X-RAY DIFFRACTION' ? p_scangle_it 8.0 10.0 ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.014 0.02 ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.155 0.15 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.181 0.3 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.265 0.3 ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd 0.227 0.3 ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd 0.227 0.3 ? ? 'X-RAY DIFFRACTION' ? p_planar_tor 2.703 5.0 ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor 15.62 20.0 ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor 14.881 30.0 ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 2RBI _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1780000 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 2RBI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2RBI _struct.title 'STRUCTURE OF BINASE MUTANT HIS 101 ASN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RBI _struct_keywords.pdbx_keywords ENDORIBONUCLEASE _struct_keywords.text 'ENDORIBONUCLEASE, MICROBIAL EXTRACELLULAR RIBONUCLEASE, PHOSPHODIESTER TRANSFERASE, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RN_BACIN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P00649 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MKKISSVFTMFALIAAILFSGFIPQQAYAETPLTQTATNETATIQLTSDVHTLAVINTFDGVADYLIRYKRLPDNYITKS QASALGWVASKGNLAEVAPGKSIGGDVFSNREGRLPSASGRTWREADINYVSGFRNADRLVYSSDWLIYKTTDHYATFTR IR ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2RBI A 1 ? 109 ? P00649 54 ? 162 ? 1 109 2 1 2RBI B 1 ? 109 ? P00649 54 ? 162 ? 1 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2RBI ASN A 101 ? UNP P00649 HIS 154 'engineered mutation' 101 1 2 2RBI ASN B 101 ? UNP P00649 HIS 154 'engineered mutation' 101 2 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id 1 2 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 6 ? TYR A 16 ? PHE A 6 TYR A 16 1 ? 11 HELX_P HELX_P2 2 LYS A 26 ? LEU A 32 ? LYS A 26 LEU A 32 1 ? 7 HELX_P HELX_P3 4 LEU A 41 ? VAL A 44 ? LEU A 41 VAL A 44 1 ? 4 HELX_P HELX_P4 5 PHE B 6 ? TYR B 16 ? PHE B 6 TYR B 16 1 ? 11 HELX_P HELX_P5 6 LYS B 26 ? LEU B 32 ? LYS B 26 LEU B 32 1 ? 7 HELX_P HELX_P6 8 LEU B 41 ? VAL B 44 ? LEU B 41 VAL B 44 1 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 70 ? ASP A 74 ? TRP A 70 ASP A 74 A 2 ARG A 86 ? SER A 90 ? ARG A 86 SER A 90 A 3 ILE A 95 ? THR A 98 ? ILE A 95 THR A 98 A 4 PHE A 105 ? ARG A 109 ? PHE A 105 ARG A 109 B 1 ILE B 95 ? THR B 98 ? ILE B 95 THR B 98 B 2 ARG B 86 ? SER B 90 ? ARG B 86 SER B 90 B 3 TRP B 70 ? ASP B 74 ? TRP B 70 ASP B 74 B 4 GLY B 51 ? PHE B 55 ? GLY B 51 PHE B 55 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG A 71 ? O ARG A 71 N TYR A 89 ? N TYR A 89 A 2 3 O ARG A 86 ? O ARG A 86 N THR A 98 ? N THR A 98 A 3 4 O ILE A 95 ? O ILE A 95 N ARG A 109 ? N ARG A 109 B 1 2 O TYR B 96 ? O TYR B 96 N VAL B 88 ? N VAL B 88 B 2 3 O LEU B 87 ? O LEU B 87 N ALA B 73 ? N ALA B 73 B 3 4 O TRP B 70 ? O TRP B 70 N PHE B 55 ? N PHE B 55 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details 1 Unknown ? ? ? ? 3 'CATALYTIC SITE RESIDUES.' 2 Unknown ? ? ? ? 1 'MUTATED CATALYTIC SITE RESIDUE.' 3 Unknown ? ? ? ? 1 'MAIN NUCLEOTIDE BINDING RESIDUE.' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 1 3 LYS A 26 ? LYS A 26 . ? 1_555 ? 2 1 3 GLU A 72 ? GLU A 72 . ? 1_555 ? 3 1 3 ARG A 86 ? ARG A 86 . ? 1_555 ? 4 2 1 ASN A 101 ? ASN A 101 . ? 1_555 ? 5 3 1 GLU A 59 ? GLU A 59 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 208 ? ? O A HOH 220 ? ? 1.91 2 1 CG A LEU 87 ? ? O A HOH 197 ? ? 2.00 3 1 O B GLY 52 ? ? O B HOH 160 ? ? 2.08 4 1 O B HOH 121 ? ? O B HOH 146 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 11 ? ? CG A ASP 11 ? ? OD1 A ASP 11 ? ? 123.90 118.30 5.60 0.90 N 2 1 CB A ASP 11 ? ? CG A ASP 11 ? ? OD2 A ASP 11 ? ? 112.16 118.30 -6.14 0.90 N 3 1 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 116.91 120.30 -3.39 0.50 N 4 1 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH2 A ARG 15 ? ? 124.91 120.30 4.61 0.50 N 5 1 CD A ARG 18 ? ? NE A ARG 18 ? ? CZ A ARG 18 ? ? 136.89 123.60 13.29 1.40 N 6 1 NE A ARG 18 ? ? CZ A ARG 18 ? ? NH1 A ARG 18 ? ? 126.88 120.30 6.58 0.50 N 7 1 NE A ARG 18 ? ? CZ A ARG 18 ? ? NH2 A ARG 18 ? ? 114.80 120.30 -5.50 0.50 N 8 1 NE A ARG 58 ? ? CZ A ARG 58 ? ? NH1 A ARG 58 ? ? 128.56 120.30 8.26 0.50 N 9 1 NE A ARG 58 ? ? CZ A ARG 58 ? ? NH2 A ARG 58 ? ? 113.81 120.30 -6.49 0.50 N 10 1 NE A ARG 68 ? ? CZ A ARG 68 ? ? NH1 A ARG 68 ? ? 125.18 120.30 4.88 0.50 N 11 1 NE A ARG 68 ? ? CZ A ARG 68 ? ? NH2 A ARG 68 ? ? 115.72 120.30 -4.58 0.50 N 12 1 CB A TYR 102 ? ? CG A TYR 102 ? ? CD2 A TYR 102 ? ? 116.09 121.00 -4.91 0.60 N 13 1 CB A TYR 102 ? ? CG A TYR 102 ? ? CD1 A TYR 102 ? ? 127.35 121.00 6.35 0.60 N 14 1 N A ARG 109 ? ? CA A ARG 109 ? ? CB A ARG 109 ? ? 121.79 110.60 11.19 1.80 N 15 1 CD A ARG 109 ? ? NE A ARG 109 ? ? CZ A ARG 109 ? ? 135.07 123.60 11.47 1.40 N 16 1 NE A ARG 109 ? ? CZ A ARG 109 ? ? NH1 A ARG 109 ? ? 126.86 120.30 6.56 0.50 N 17 1 NE A ARG 109 ? ? CZ A ARG 109 ? ? NH2 A ARG 109 ? ? 117.28 120.30 -3.02 0.50 N 18 1 NE B ARG 18 ? ? CZ B ARG 18 ? ? NH1 B ARG 18 ? ? 127.96 120.30 7.66 0.50 N 19 1 CB B ASP 21 ? ? CG B ASP 21 ? ? OD2 B ASP 21 ? ? 124.78 118.30 6.48 0.90 N 20 1 NE B ARG 58 ? ? CZ B ARG 58 ? ? NH2 B ARG 58 ? ? 115.59 120.30 -4.71 0.50 N 21 1 NH1 B ARG 61 ? ? CZ B ARG 61 ? ? NH2 B ARG 61 ? ? 126.44 119.40 7.04 1.10 N 22 1 NE B ARG 61 ? ? CZ B ARG 61 ? ? NH2 B ARG 61 ? ? 112.95 120.30 -7.35 0.50 N 23 1 NE B ARG 68 ? ? CZ B ARG 68 ? ? NH1 B ARG 68 ? ? 125.58 120.30 5.28 0.50 N 24 1 NE B ARG 71 ? ? CZ B ARG 71 ? ? NH1 B ARG 71 ? ? 124.75 120.30 4.45 0.50 N 25 1 NE B ARG 82 ? ? CZ B ARG 82 ? ? NH1 B ARG 82 ? ? 123.83 120.30 3.53 0.50 N 26 1 NE B ARG 86 ? ? CZ B ARG 86 ? ? NH1 B ARG 86 ? ? 127.71 120.30 7.41 0.50 N 27 1 NE B ARG 86 ? ? CZ B ARG 86 ? ? NH2 B ARG 86 ? ? 116.11 120.30 -4.19 0.50 N 28 1 CB B LEU 87 ? ? CA B LEU 87 ? ? C B LEU 87 ? ? 122.11 110.20 11.91 1.90 N 29 1 CD B ARG 109 ? ? NE B ARG 109 ? ? CZ B ARG 109 ? ? 144.19 123.60 20.59 1.40 N 30 1 NH1 B ARG 109 ? ? CZ B ARG 109 ? ? NH2 B ARG 109 ? ? 111.02 119.40 -8.38 1.10 N 31 1 NE B ARG 109 ? ? CZ B ARG 109 ? ? NH1 B ARG 109 ? ? 134.67 120.30 14.37 0.50 N 32 1 NE B ARG 109 ? ? CZ B ARG 109 ? ? NH2 B ARG 109 ? ? 114.25 120.30 -6.05 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 78 ? ? -125.60 -57.92 2 1 TRP A 93 ? ? 75.05 31.48 3 1 ASN B 4 ? ? -142.87 27.19 4 1 VAL B 78 ? ? -125.48 -52.45 5 1 TYR B 102 ? ? 54.91 18.04 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 1 ? A ALA 1 2 1 Y 1 B ALA 1 ? B ALA 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 PHE N N N N 216 PHE CA C N S 217 PHE C C N N 218 PHE O O N N 219 PHE CB C N N 220 PHE CG C Y N 221 PHE CD1 C Y N 222 PHE CD2 C Y N 223 PHE CE1 C Y N 224 PHE CE2 C Y N 225 PHE CZ C Y N 226 PHE OXT O N N 227 PHE H H N N 228 PHE H2 H N N 229 PHE HA H N N 230 PHE HB2 H N N 231 PHE HB3 H N N 232 PHE HD1 H N N 233 PHE HD2 H N N 234 PHE HE1 H N N 235 PHE HE2 H N N 236 PHE HZ H N N 237 PHE HXT H N N 238 PRO N N N N 239 PRO CA C N S 240 PRO C C N N 241 PRO O O N N 242 PRO CB C N N 243 PRO CG C N N 244 PRO CD C N N 245 PRO OXT O N N 246 PRO H H N N 247 PRO HA H N N 248 PRO HB2 H N N 249 PRO HB3 H N N 250 PRO HG2 H N N 251 PRO HG3 H N N 252 PRO HD2 H N N 253 PRO HD3 H N N 254 PRO HXT H N N 255 SER N N N N 256 SER CA C N S 257 SER C C N N 258 SER O O N N 259 SER CB C N N 260 SER OG O N N 261 SER OXT O N N 262 SER H H N N 263 SER H2 H N N 264 SER HA H N N 265 SER HB2 H N N 266 SER HB3 H N N 267 SER HG H N N 268 SER HXT H N N 269 THR N N N N 270 THR CA C N S 271 THR C C N N 272 THR O O N N 273 THR CB C N R 274 THR OG1 O N N 275 THR CG2 C N N 276 THR OXT O N N 277 THR H H N N 278 THR H2 H N N 279 THR HA H N N 280 THR HB H N N 281 THR HG1 H N N 282 THR HG21 H N N 283 THR HG22 H N N 284 THR HG23 H N N 285 THR HXT H N N 286 TRP N N N N 287 TRP CA C N S 288 TRP C C N N 289 TRP O O N N 290 TRP CB C N N 291 TRP CG C Y N 292 TRP CD1 C Y N 293 TRP CD2 C Y N 294 TRP NE1 N Y N 295 TRP CE2 C Y N 296 TRP CE3 C Y N 297 TRP CZ2 C Y N 298 TRP CZ3 C Y N 299 TRP CH2 C Y N 300 TRP OXT O N N 301 TRP H H N N 302 TRP H2 H N N 303 TRP HA H N N 304 TRP HB2 H N N 305 TRP HB3 H N N 306 TRP HD1 H N N 307 TRP HE1 H N N 308 TRP HE3 H N N 309 TRP HZ2 H N N 310 TRP HZ3 H N N 311 TRP HH2 H N N 312 TRP HXT H N N 313 TYR N N N N 314 TYR CA C N S 315 TYR C C N N 316 TYR O O N N 317 TYR CB C N N 318 TYR CG C Y N 319 TYR CD1 C Y N 320 TYR CD2 C Y N 321 TYR CE1 C Y N 322 TYR CE2 C Y N 323 TYR CZ C Y N 324 TYR OH O N N 325 TYR OXT O N N 326 TYR H H N N 327 TYR H2 H N N 328 TYR HA H N N 329 TYR HB2 H N N 330 TYR HB3 H N N 331 TYR HD1 H N N 332 TYR HD2 H N N 333 TYR HE1 H N N 334 TYR HE2 H N N 335 TYR HH H N N 336 TYR HXT H N N 337 VAL N N N N 338 VAL CA C N S 339 VAL C C N N 340 VAL O O N N 341 VAL CB C N N 342 VAL CG1 C N N 343 VAL CG2 C N N 344 VAL OXT O N N 345 VAL H H N N 346 VAL H2 H N N 347 VAL HA H N N 348 VAL HB H N N 349 VAL HG11 H N N 350 VAL HG12 H N N 351 VAL HG13 H N N 352 VAL HG21 H N N 353 VAL HG22 H N N 354 VAL HG23 H N N 355 VAL HXT H N N 356 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 PHE N CA sing N N 205 PHE N H sing N N 206 PHE N H2 sing N N 207 PHE CA C sing N N 208 PHE CA CB sing N N 209 PHE CA HA sing N N 210 PHE C O doub N N 211 PHE C OXT sing N N 212 PHE CB CG sing N N 213 PHE CB HB2 sing N N 214 PHE CB HB3 sing N N 215 PHE CG CD1 doub Y N 216 PHE CG CD2 sing Y N 217 PHE CD1 CE1 sing Y N 218 PHE CD1 HD1 sing N N 219 PHE CD2 CE2 doub Y N 220 PHE CD2 HD2 sing N N 221 PHE CE1 CZ doub Y N 222 PHE CE1 HE1 sing N N 223 PHE CE2 CZ sing Y N 224 PHE CE2 HE2 sing N N 225 PHE CZ HZ sing N N 226 PHE OXT HXT sing N N 227 PRO N CA sing N N 228 PRO N CD sing N N 229 PRO N H sing N N 230 PRO CA C sing N N 231 PRO CA CB sing N N 232 PRO CA HA sing N N 233 PRO C O doub N N 234 PRO C OXT sing N N 235 PRO CB CG sing N N 236 PRO CB HB2 sing N N 237 PRO CB HB3 sing N N 238 PRO CG CD sing N N 239 PRO CG HG2 sing N N 240 PRO CG HG3 sing N N 241 PRO CD HD2 sing N N 242 PRO CD HD3 sing N N 243 PRO OXT HXT sing N N 244 SER N CA sing N N 245 SER N H sing N N 246 SER N H2 sing N N 247 SER CA C sing N N 248 SER CA CB sing N N 249 SER CA HA sing N N 250 SER C O doub N N 251 SER C OXT sing N N 252 SER CB OG sing N N 253 SER CB HB2 sing N N 254 SER CB HB3 sing N N 255 SER OG HG sing N N 256 SER OXT HXT sing N N 257 THR N CA sing N N 258 THR N H sing N N 259 THR N H2 sing N N 260 THR CA C sing N N 261 THR CA CB sing N N 262 THR CA HA sing N N 263 THR C O doub N N 264 THR C OXT sing N N 265 THR CB OG1 sing N N 266 THR CB CG2 sing N N 267 THR CB HB sing N N 268 THR OG1 HG1 sing N N 269 THR CG2 HG21 sing N N 270 THR CG2 HG22 sing N N 271 THR CG2 HG23 sing N N 272 THR OXT HXT sing N N 273 TRP N CA sing N N 274 TRP N H sing N N 275 TRP N H2 sing N N 276 TRP CA C sing N N 277 TRP CA CB sing N N 278 TRP CA HA sing N N 279 TRP C O doub N N 280 TRP C OXT sing N N 281 TRP CB CG sing N N 282 TRP CB HB2 sing N N 283 TRP CB HB3 sing N N 284 TRP CG CD1 doub Y N 285 TRP CG CD2 sing Y N 286 TRP CD1 NE1 sing Y N 287 TRP CD1 HD1 sing N N 288 TRP CD2 CE2 doub Y N 289 TRP CD2 CE3 sing Y N 290 TRP NE1 CE2 sing Y N 291 TRP NE1 HE1 sing N N 292 TRP CE2 CZ2 sing Y N 293 TRP CE3 CZ3 doub Y N 294 TRP CE3 HE3 sing N N 295 TRP CZ2 CH2 doub Y N 296 TRP CZ2 HZ2 sing N N 297 TRP CZ3 CH2 sing Y N 298 TRP CZ3 HZ3 sing N N 299 TRP CH2 HH2 sing N N 300 TRP OXT HXT sing N N 301 TYR N CA sing N N 302 TYR N H sing N N 303 TYR N H2 sing N N 304 TYR CA C sing N N 305 TYR CA CB sing N N 306 TYR CA HA sing N N 307 TYR C O doub N N 308 TYR C OXT sing N N 309 TYR CB CG sing N N 310 TYR CB HB2 sing N N 311 TYR CB HB3 sing N N 312 TYR CG CD1 doub Y N 313 TYR CG CD2 sing Y N 314 TYR CD1 CE1 sing Y N 315 TYR CD1 HD1 sing N N 316 TYR CD2 CE2 doub Y N 317 TYR CD2 HD2 sing N N 318 TYR CE1 CZ doub Y N 319 TYR CE1 HE1 sing N N 320 TYR CE2 CZ sing Y N 321 TYR CE2 HE2 sing N N 322 TYR CZ OH sing N N 323 TYR OH HH sing N N 324 TYR OXT HXT sing N N 325 VAL N CA sing N N 326 VAL N H sing N N 327 VAL N H2 sing N N 328 VAL CA C sing N N 329 VAL CA CB sing N N 330 VAL CA HA sing N N 331 VAL C O doub N N 332 VAL C OXT sing N N 333 VAL CB CG1 sing N N 334 VAL CB CG2 sing N N 335 VAL CB HB sing N N 336 VAL CG1 HG11 sing N N 337 VAL CG1 HG12 sing N N 338 VAL CG1 HG13 sing N N 339 VAL CG2 HG21 sing N N 340 VAL CG2 HG22 sing N N 341 VAL CG2 HG23 sing N N 342 VAL OXT HXT sing N N 343 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'WILD-TYPE BINASE' # _atom_sites.entry_id 2RBI _atom_sites.fract_transf_matrix[1][1] 0.008988 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014461 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029967 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_