data_2RD1 # _entry.id 2RD1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2RD1 RCSB RCSB044712 WWPDB D_1000044712 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB StR87A . unspecified PDB 2JN0 'Solution NMR structure of E.coli ygdR protein (structural homolog)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2RD1 _pdbx_database_status.recvd_initial_deposition_date 2007-09-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuzin, A.P.' 1 'Su, M.' 2 'Seetharaman, J.' 3 'Vorobiev, S.M.' 4 'Wang, D.' 5 'Fang, Y.' 6 'Owens, L.' 7 'Mao, L.-C.' 8 'Xiao, R.' 9 'Liu, J.' 10 'Baran, M.C.' 11 'Acton, T.B.' 12 'Rost, B.' 13 'Montelione, G.T.' 14 'Hunt, J.F.' 15 'Tong, L.' 16 'Northeast Structural Genomics Consortium (NESG)' 17 # _citation.id primary _citation.title 'X-Ray structure of the protein Q7CQI7.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kuzin, A.P.' 1 primary 'Su, M.' 2 primary 'Seetharaman, J.' 3 primary 'Vorobiev, S.M.' 4 primary 'Wan, D.' 5 primary 'Fang, Y.' 6 primary 'Owens, L.' 7 primary 'Ma, L.-C.' 8 primary 'Xiao, R.' 9 primary 'Liu, J.' 10 primary 'Baran, M.C.' 11 primary 'Acton, T.B.' 12 primary 'Rost, B.' 13 primary 'Montelione, G.T.' 14 primary 'Hunt, J.F.' 15 primary 'Tong, L.' 16 # _cell.entry_id 2RD1 _cell.length_a 57.696 _cell.length_b 57.696 _cell.length_c 100.420 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2RD1 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative outer membrane lipoprotein' 7150.480 3 ? ? 'Residues 20-73' ? 2 water nat water 18.015 47 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CTTNYV(MSE)TTKNGQTIVTQGKPQLDKETG(MSE)TSYTDQEGNQREINSNDVAQLIKADLEHHHHHH' _entity_poly.pdbx_seq_one_letter_code_can CTTNYVMTTKNGQTIVTQGKPQLDKETGMTSYTDQEGNQREINSNDVAQLIKADLEHHHHHH _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier StR87A # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 THR n 1 3 THR n 1 4 ASN n 1 5 TYR n 1 6 VAL n 1 7 MSE n 1 8 THR n 1 9 THR n 1 10 LYS n 1 11 ASN n 1 12 GLY n 1 13 GLN n 1 14 THR n 1 15 ILE n 1 16 VAL n 1 17 THR n 1 18 GLN n 1 19 GLY n 1 20 LYS n 1 21 PRO n 1 22 GLN n 1 23 LEU n 1 24 ASP n 1 25 LYS n 1 26 GLU n 1 27 THR n 1 28 GLY n 1 29 MSE n 1 30 THR n 1 31 SER n 1 32 TYR n 1 33 THR n 1 34 ASP n 1 35 GLN n 1 36 GLU n 1 37 GLY n 1 38 ASN n 1 39 GLN n 1 40 ARG n 1 41 GLU n 1 42 ILE n 1 43 ASN n 1 44 SER n 1 45 ASN n 1 46 ASP n 1 47 VAL n 1 48 ALA n 1 49 GLN n 1 50 LEU n 1 51 ILE n 1 52 LYS n 1 53 ALA n 1 54 ASP n 1 55 LEU n 1 56 GLU n 1 57 HIS n 1 58 HIS n 1 59 HIS n 1 60 HIS n 1 61 HIS n 1 62 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Salmonella _entity_src_gen.pdbx_gene_src_gene STM1585 _entity_src_gen.gene_src_species 'Salmonella typhimurium' _entity_src_gen.gene_src_strain 'LT2, SGSC1412' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella typhimurium LT2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 99287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 700720 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7CQI7_SALTY _struct_ref.pdbx_db_accession Q7CQI7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code CTTNYVMTTKNGQTIVTQGKPQLDKETGMTSYTDQEGNQREINSNDVAQLIKAD _struct_ref.pdbx_align_begin 20 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2RD1 A 1 ? 54 ? Q7CQI7 20 ? 73 ? 20 73 2 1 2RD1 B 1 ? 54 ? Q7CQI7 20 ? 73 ? 20 73 3 1 2RD1 C 1 ? 54 ? Q7CQI7 20 ? 73 ? 20 73 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2RD1 LEU A 55 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 74 1 1 2RD1 GLU A 56 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 75 2 1 2RD1 HIS A 57 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 76 3 1 2RD1 HIS A 58 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 77 4 1 2RD1 HIS A 59 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 78 5 1 2RD1 HIS A 60 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 79 6 1 2RD1 HIS A 61 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 80 7 1 2RD1 HIS A 62 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 81 8 2 2RD1 LEU B 55 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 74 9 2 2RD1 GLU B 56 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 75 10 2 2RD1 HIS B 57 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 76 11 2 2RD1 HIS B 58 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 77 12 2 2RD1 HIS B 59 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 78 13 2 2RD1 HIS B 60 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 79 14 2 2RD1 HIS B 61 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 80 15 2 2RD1 HIS B 62 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 81 16 3 2RD1 LEU C 55 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 74 17 3 2RD1 GLU C 56 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 75 18 3 2RD1 HIS C 57 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 76 19 3 2RD1 HIS C 58 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 77 20 3 2RD1 HIS C 59 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 78 21 3 2RD1 HIS C 60 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 79 22 3 2RD1 HIS C 61 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 80 23 3 2RD1 HIS C 62 ? UNP Q7CQI7 ? ? 'EXPRESSION TAG' 81 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2RD1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.95 _exptl_crystal.density_percent_sol 36.85 _exptl_crystal.description 'The structure factor file contains Friedel pairs' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.1 _exptl_crystal_grow.pdbx_details '18% PEG 4000, 0.1M Ammonium chloride, pH 9.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2007-09-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97900 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97900 # _reflns.entry_id 2RD1 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.3 _reflns.number_obs 14487 _reflns.number_all ? _reflns.percent_possible_obs 100.00 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.6 _reflns.B_iso_Wilson_estimate 19.5 _reflns.pdbx_redundancy 34.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.448 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.1 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2RD1 _refine.ls_number_reflns_obs 7959 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 127079.53 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.99 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 91.9 _refine.ls_R_factor_obs 0.207 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.207 _refine.ls_R_factor_R_free 0.264 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 658 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 40.1 _refine.aniso_B[1][1] 1.76 _refine.aniso_B[2][2] 1.76 _refine.aniso_B[3][3] -3.53 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 34.6913 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'The Friedel pairs were used in phasing. Bulk solvent model was used in refinement' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2RD1 _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs 0.21 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.36 _refine_analyze.Luzzati_sigma_a_free 0.32 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1361 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 1409 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 19.99 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26.7 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.69 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.44 _refine_ls_shell.number_reflns_R_work 1859 _refine_ls_shell.R_factor_R_work 0.227 _refine_ls_shell.percent_reflns_obs 82.5 _refine_ls_shell.R_factor_R_free 0.319 _refine_ls_shell.R_factor_R_free_error 0.032 _refine_ls_shell.percent_reflns_R_free 5.2 _refine_ls_shell.number_reflns_R_free 101 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2RD1 _struct.title 'X-Ray structure of the protein Q7CQI7. Northeast Structural Genomics Consortium target StR87A' _struct.pdbx_descriptor 'Putative outer membrane lipoprotein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RD1 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;NESG, Q7CQI7, StR87A, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Lipoprotein, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A VAL 6 C ? ? ? 1_555 A MSE 7 N ? ? A VAL 25 A MSE 26 1_555 ? ? ? ? ? ? ? 1.324 ? covale2 covale ? ? A MSE 7 C ? ? ? 1_555 A THR 8 N ? ? A MSE 26 A THR 27 1_555 ? ? ? ? ? ? ? 1.325 ? covale3 covale ? ? A GLY 28 C ? ? ? 1_555 A MSE 29 N ? ? A GLY 47 A MSE 48 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A MSE 29 C ? ? ? 1_555 A THR 30 N ? ? A MSE 48 A THR 49 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? B VAL 6 C ? ? ? 1_555 B MSE 7 N ? ? B VAL 25 B MSE 26 1_555 ? ? ? ? ? ? ? 1.322 ? covale6 covale ? ? B MSE 7 C ? ? ? 1_555 B THR 8 N ? ? B MSE 26 B THR 27 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale ? ? B GLY 28 C ? ? ? 1_555 B MSE 29 N ? ? B GLY 47 B MSE 48 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale ? ? B MSE 29 C ? ? ? 1_555 B THR 30 N ? ? B MSE 48 B THR 49 1_555 ? ? ? ? ? ? ? 1.324 ? covale9 covale ? ? C VAL 6 C ? ? ? 1_555 C MSE 7 N ? ? C VAL 25 C MSE 26 1_555 ? ? ? ? ? ? ? 1.317 ? covale10 covale ? ? C MSE 7 C ? ? ? 1_555 C THR 8 N ? ? C MSE 26 C THR 27 1_555 ? ? ? ? ? ? ? 1.326 ? covale11 covale ? ? C GLY 28 C ? ? ? 1_555 C MSE 29 N ? ? C GLY 47 C MSE 48 1_555 ? ? ? ? ? ? ? 1.330 ? covale12 covale ? ? C MSE 29 C ? ? ? 1_555 C THR 30 N ? ? C MSE 48 C THR 49 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 3 ? D ? 3 ? E ? 3 ? F ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 14 ? GLN A 18 ? THR A 33 GLN A 37 A 2 ASN A 4 ? THR A 9 ? ASN A 23 THR A 28 A 3 VAL A 47 ? LYS A 52 ? VAL A 66 LYS A 71 B 1 GLN A 22 ? LEU A 23 ? GLN A 41 LEU A 42 B 2 MSE A 29 ? THR A 33 ? MSE A 48 THR A 52 B 3 GLN A 39 ? ASN A 43 ? GLN A 58 ASN A 62 C 1 THR B 14 ? GLN B 18 ? THR B 33 GLN B 37 C 2 ASN B 4 ? THR B 9 ? ASN B 23 THR B 28 C 3 VAL B 47 ? LYS B 52 ? VAL B 66 LYS B 71 D 1 GLN B 22 ? LEU B 23 ? GLN B 41 LEU B 42 D 2 MSE B 29 ? THR B 33 ? MSE B 48 THR B 52 D 3 GLN B 39 ? ASN B 43 ? GLN B 58 ASN B 62 E 1 THR C 14 ? GLN C 18 ? THR C 33 GLN C 37 E 2 ASN C 4 ? THR C 9 ? ASN C 23 THR C 28 E 3 VAL C 47 ? LYS C 52 ? VAL C 66 LYS C 71 F 1 GLN C 22 ? LEU C 23 ? GLN C 41 LEU C 42 F 2 MSE C 29 ? THR C 33 ? MSE C 48 THR C 52 F 3 GLN C 39 ? ASN C 43 ? GLN C 58 ASN C 62 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 17 ? O THR A 36 N TYR A 5 ? N TYR A 24 A 2 3 N VAL A 6 ? N VAL A 25 O ILE A 51 ? O ILE A 70 B 1 2 N GLN A 22 ? N GLN A 41 O SER A 31 ? O SER A 50 B 2 3 N TYR A 32 ? N TYR A 51 O ARG A 40 ? O ARG A 59 C 1 2 O THR B 17 ? O THR B 36 N TYR B 5 ? N TYR B 24 C 2 3 N VAL B 6 ? N VAL B 25 O ILE B 51 ? O ILE B 70 D 1 2 N GLN B 22 ? N GLN B 41 O SER B 31 ? O SER B 50 D 2 3 N TYR B 32 ? N TYR B 51 O ARG B 40 ? O ARG B 59 E 1 2 O ILE C 15 ? O ILE C 34 N MSE C 7 ? N MSE C 26 E 2 3 N VAL C 6 ? N VAL C 25 O ILE C 51 ? O ILE C 70 F 1 2 N GLN C 22 ? N GLN C 41 O SER C 31 ? O SER C 50 F 2 3 N THR C 30 ? N THR C 49 O ILE C 42 ? O ILE C 61 # _database_PDB_matrix.entry_id 2RD1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2RD1 _atom_sites.fract_transf_matrix[1][1] 0.017332 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017332 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009958 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 20 ? ? ? A . n A 1 2 THR 2 21 ? ? ? A . n A 1 3 THR 3 22 22 THR THR A . n A 1 4 ASN 4 23 23 ASN ASN A . n A 1 5 TYR 5 24 24 TYR TYR A . n A 1 6 VAL 6 25 25 VAL VAL A . n A 1 7 MSE 7 26 26 MSE MSE A . n A 1 8 THR 8 27 27 THR THR A . n A 1 9 THR 9 28 28 THR THR A . n A 1 10 LYS 10 29 29 LYS LYS A . n A 1 11 ASN 11 30 30 ASN ASN A . n A 1 12 GLY 12 31 31 GLY GLY A . n A 1 13 GLN 13 32 32 GLN GLN A . n A 1 14 THR 14 33 33 THR THR A . n A 1 15 ILE 15 34 34 ILE ILE A . n A 1 16 VAL 16 35 35 VAL VAL A . n A 1 17 THR 17 36 36 THR THR A . n A 1 18 GLN 18 37 37 GLN GLN A . n A 1 19 GLY 19 38 38 GLY GLY A . n A 1 20 LYS 20 39 39 LYS LYS A . n A 1 21 PRO 21 40 40 PRO PRO A . n A 1 22 GLN 22 41 41 GLN GLN A . n A 1 23 LEU 23 42 42 LEU LEU A . n A 1 24 ASP 24 43 43 ASP ASP A . n A 1 25 LYS 25 44 44 LYS LYS A . n A 1 26 GLU 26 45 45 GLU GLU A . n A 1 27 THR 27 46 46 THR THR A . n A 1 28 GLY 28 47 47 GLY GLY A . n A 1 29 MSE 29 48 48 MSE MSE A . n A 1 30 THR 30 49 49 THR THR A . n A 1 31 SER 31 50 50 SER SER A . n A 1 32 TYR 32 51 51 TYR TYR A . n A 1 33 THR 33 52 52 THR THR A . n A 1 34 ASP 34 53 53 ASP ASP A . n A 1 35 GLN 35 54 54 GLN GLN A . n A 1 36 GLU 36 55 55 GLU GLU A . n A 1 37 GLY 37 56 56 GLY GLY A . n A 1 38 ASN 38 57 57 ASN ASN A . n A 1 39 GLN 39 58 58 GLN GLN A . n A 1 40 ARG 40 59 59 ARG ARG A . n A 1 41 GLU 41 60 60 GLU GLU A . n A 1 42 ILE 42 61 61 ILE ILE A . n A 1 43 ASN 43 62 62 ASN ASN A . n A 1 44 SER 44 63 63 SER SER A . n A 1 45 ASN 45 64 64 ASN ASN A . n A 1 46 ASP 46 65 65 ASP ASP A . n A 1 47 VAL 47 66 66 VAL VAL A . n A 1 48 ALA 48 67 67 ALA ALA A . n A 1 49 GLN 49 68 68 GLN GLN A . n A 1 50 LEU 50 69 69 LEU LEU A . n A 1 51 ILE 51 70 70 ILE ILE A . n A 1 52 LYS 52 71 71 LYS LYS A . n A 1 53 ALA 53 72 72 ALA ALA A . n A 1 54 ASP 54 73 73 ASP ASP A . n A 1 55 LEU 55 74 74 LEU LEU A . n A 1 56 GLU 56 75 75 GLU GLU A . n A 1 57 HIS 57 76 76 HIS HIS A . n A 1 58 HIS 58 77 77 HIS HIS A . n A 1 59 HIS 59 78 78 HIS HIS A . n A 1 60 HIS 60 79 ? ? ? A . n A 1 61 HIS 61 80 ? ? ? A . n A 1 62 HIS 62 81 ? ? ? A . n B 1 1 CYS 1 20 ? ? ? B . n B 1 2 THR 2 21 21 THR THR B . n B 1 3 THR 3 22 22 THR THR B . n B 1 4 ASN 4 23 23 ASN ASN B . n B 1 5 TYR 5 24 24 TYR TYR B . n B 1 6 VAL 6 25 25 VAL VAL B . n B 1 7 MSE 7 26 26 MSE MSE B . n B 1 8 THR 8 27 27 THR THR B . n B 1 9 THR 9 28 28 THR THR B . n B 1 10 LYS 10 29 29 LYS LYS B . n B 1 11 ASN 11 30 30 ASN ASN B . n B 1 12 GLY 12 31 31 GLY GLY B . n B 1 13 GLN 13 32 32 GLN GLN B . n B 1 14 THR 14 33 33 THR THR B . n B 1 15 ILE 15 34 34 ILE ILE B . n B 1 16 VAL 16 35 35 VAL VAL B . n B 1 17 THR 17 36 36 THR THR B . n B 1 18 GLN 18 37 37 GLN GLN B . n B 1 19 GLY 19 38 38 GLY GLY B . n B 1 20 LYS 20 39 39 LYS LYS B . n B 1 21 PRO 21 40 40 PRO PRO B . n B 1 22 GLN 22 41 41 GLN GLN B . n B 1 23 LEU 23 42 42 LEU LEU B . n B 1 24 ASP 24 43 43 ASP ASP B . n B 1 25 LYS 25 44 44 LYS LYS B . n B 1 26 GLU 26 45 45 GLU GLU B . n B 1 27 THR 27 46 46 THR THR B . n B 1 28 GLY 28 47 47 GLY GLY B . n B 1 29 MSE 29 48 48 MSE MSE B . n B 1 30 THR 30 49 49 THR THR B . n B 1 31 SER 31 50 50 SER SER B . n B 1 32 TYR 32 51 51 TYR TYR B . n B 1 33 THR 33 52 52 THR THR B . n B 1 34 ASP 34 53 53 ASP ASP B . n B 1 35 GLN 35 54 54 GLN GLN B . n B 1 36 GLU 36 55 55 GLU GLU B . n B 1 37 GLY 37 56 56 GLY GLY B . n B 1 38 ASN 38 57 57 ASN ASN B . n B 1 39 GLN 39 58 58 GLN GLN B . n B 1 40 ARG 40 59 59 ARG ARG B . n B 1 41 GLU 41 60 60 GLU GLU B . n B 1 42 ILE 42 61 61 ILE ILE B . n B 1 43 ASN 43 62 62 ASN ASN B . n B 1 44 SER 44 63 63 SER SER B . n B 1 45 ASN 45 64 64 ASN ASN B . n B 1 46 ASP 46 65 65 ASP ASP B . n B 1 47 VAL 47 66 66 VAL VAL B . n B 1 48 ALA 48 67 67 ALA ALA B . n B 1 49 GLN 49 68 68 GLN GLN B . n B 1 50 LEU 50 69 69 LEU LEU B . n B 1 51 ILE 51 70 70 ILE ILE B . n B 1 52 LYS 52 71 71 LYS LYS B . n B 1 53 ALA 53 72 72 ALA ALA B . n B 1 54 ASP 54 73 73 ASP ASP B . n B 1 55 LEU 55 74 74 LEU LEU B . n B 1 56 GLU 56 75 75 GLU GLU B . n B 1 57 HIS 57 76 76 HIS HIS B . n B 1 58 HIS 58 77 77 HIS HIS B . n B 1 59 HIS 59 78 78 HIS HIS B . n B 1 60 HIS 60 79 ? ? ? B . n B 1 61 HIS 61 80 ? ? ? B . n B 1 62 HIS 62 81 ? ? ? B . n C 1 1 CYS 1 20 ? ? ? C . n C 1 2 THR 2 21 21 THR THR C . n C 1 3 THR 3 22 22 THR THR C . n C 1 4 ASN 4 23 23 ASN ASN C . n C 1 5 TYR 5 24 24 TYR TYR C . n C 1 6 VAL 6 25 25 VAL VAL C . n C 1 7 MSE 7 26 26 MSE MSE C . n C 1 8 THR 8 27 27 THR THR C . n C 1 9 THR 9 28 28 THR THR C . n C 1 10 LYS 10 29 29 LYS LYS C . n C 1 11 ASN 11 30 30 ASN ASN C . n C 1 12 GLY 12 31 31 GLY GLY C . n C 1 13 GLN 13 32 32 GLN GLN C . n C 1 14 THR 14 33 33 THR THR C . n C 1 15 ILE 15 34 34 ILE ILE C . n C 1 16 VAL 16 35 35 VAL VAL C . n C 1 17 THR 17 36 36 THR THR C . n C 1 18 GLN 18 37 37 GLN GLN C . n C 1 19 GLY 19 38 38 GLY GLY C . n C 1 20 LYS 20 39 39 LYS LYS C . n C 1 21 PRO 21 40 40 PRO PRO C . n C 1 22 GLN 22 41 41 GLN GLN C . n C 1 23 LEU 23 42 42 LEU LEU C . n C 1 24 ASP 24 43 43 ASP ASP C . n C 1 25 LYS 25 44 44 LYS LYS C . n C 1 26 GLU 26 45 45 GLU GLU C . n C 1 27 THR 27 46 46 THR THR C . n C 1 28 GLY 28 47 47 GLY GLY C . n C 1 29 MSE 29 48 48 MSE MSE C . n C 1 30 THR 30 49 49 THR THR C . n C 1 31 SER 31 50 50 SER SER C . n C 1 32 TYR 32 51 51 TYR TYR C . n C 1 33 THR 33 52 52 THR THR C . n C 1 34 ASP 34 53 53 ASP ASP C . n C 1 35 GLN 35 54 54 GLN GLN C . n C 1 36 GLU 36 55 55 GLU GLU C . n C 1 37 GLY 37 56 56 GLY GLY C . n C 1 38 ASN 38 57 57 ASN ASN C . n C 1 39 GLN 39 58 58 GLN GLN C . n C 1 40 ARG 40 59 59 ARG ARG C . n C 1 41 GLU 41 60 60 GLU GLU C . n C 1 42 ILE 42 61 61 ILE ILE C . n C 1 43 ASN 43 62 62 ASN ASN C . n C 1 44 SER 44 63 63 SER SER C . n C 1 45 ASN 45 64 64 ASN ASN C . n C 1 46 ASP 46 65 65 ASP ASP C . n C 1 47 VAL 47 66 66 VAL VAL C . n C 1 48 ALA 48 67 67 ALA ALA C . n C 1 49 GLN 49 68 68 GLN GLN C . n C 1 50 LEU 50 69 69 LEU LEU C . n C 1 51 ILE 51 70 70 ILE ILE C . n C 1 52 LYS 52 71 71 LYS LYS C . n C 1 53 ALA 53 72 72 ALA ALA C . n C 1 54 ASP 54 73 73 ASP ASP C . n C 1 55 LEU 55 74 74 LEU LEU C . n C 1 56 GLU 56 75 75 GLU GLU C . n C 1 57 HIS 57 76 76 HIS HIS C . n C 1 58 HIS 58 77 77 HIS HIS C . n C 1 59 HIS 59 78 78 HIS HIS C . n C 1 60 HIS 60 79 ? ? ? C . n C 1 61 HIS 61 80 ? ? ? C . n C 1 62 HIS 62 81 ? ? ? C . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 82 1 HOH TIP A . D 2 HOH 2 83 7 HOH TIP A . D 2 HOH 3 84 8 HOH TIP A . D 2 HOH 4 85 9 HOH TIP A . D 2 HOH 5 86 11 HOH TIP A . D 2 HOH 6 87 12 HOH TIP A . D 2 HOH 7 88 13 HOH TIP A . D 2 HOH 8 89 19 HOH TIP A . D 2 HOH 9 90 20 HOH TIP A . D 2 HOH 10 91 21 HOH TIP A . D 2 HOH 11 92 23 HOH TIP A . D 2 HOH 12 93 32 HOH TIP A . D 2 HOH 13 94 33 HOH TIP A . D 2 HOH 14 95 35 HOH TIP A . D 2 HOH 15 96 39 HOH TIP A . E 2 HOH 1 82 4 HOH TIP B . E 2 HOH 2 83 5 HOH TIP B . E 2 HOH 3 84 6 HOH TIP B . E 2 HOH 4 85 14 HOH TIP B . E 2 HOH 5 86 16 HOH TIP B . E 2 HOH 6 87 18 HOH TIP B . E 2 HOH 7 88 24 HOH TIP B . E 2 HOH 8 89 26 HOH TIP B . E 2 HOH 9 90 28 HOH TIP B . E 2 HOH 10 91 29 HOH TIP B . E 2 HOH 11 92 37 HOH TIP B . E 2 HOH 12 93 38 HOH TIP B . E 2 HOH 13 94 41 HOH TIP B . E 2 HOH 14 95 42 HOH TIP B . E 2 HOH 15 96 44 HOH TIP B . E 2 HOH 16 97 47 HOH TIP B . E 2 HOH 17 98 48 HOH TIP B . F 2 HOH 1 82 2 HOH TIP C . F 2 HOH 2 83 3 HOH TIP C . F 2 HOH 3 84 10 HOH TIP C . F 2 HOH 4 85 15 HOH TIP C . F 2 HOH 5 86 17 HOH TIP C . F 2 HOH 6 87 22 HOH TIP C . F 2 HOH 7 88 25 HOH TIP C . F 2 HOH 8 89 30 HOH TIP C . F 2 HOH 9 90 31 HOH TIP C . F 2 HOH 10 91 34 HOH TIP C . F 2 HOH 11 92 36 HOH TIP C . F 2 HOH 12 93 40 HOH TIP C . F 2 HOH 13 94 43 HOH TIP C . F 2 HOH 14 95 45 HOH TIP C . F 2 HOH 15 96 46 HOH TIP C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 7 A MSE 26 ? MET SELENOMETHIONINE 2 A MSE 29 A MSE 48 ? MET SELENOMETHIONINE 3 B MSE 7 B MSE 26 ? MET SELENOMETHIONINE 4 B MSE 29 B MSE 48 ? MET SELENOMETHIONINE 5 C MSE 7 C MSE 26 ? MET SELENOMETHIONINE 6 C MSE 29 C MSE 48 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 4 software_defined_assembly PISA dimeric 2 5 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D 2 1 B,E 3 1 C,F 4 1 A,D 4 2 C,F 5 1,2 B,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 4 'ABSA (A^2)' 1930 ? 5 'ABSA (A^2)' 2120 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 57.6960000000 -1.0000000000 0.0000000000 0.0000000000 57.6960000000 0.0000000000 0.0000000000 -1.0000000000 50.2100000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' audit_author 3 4 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_audit_author.name' 3 4 'Structure model' '_citation_author.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.2 ? 1 ADSC 'data collection' Quantum ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SnB phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 44 ? ? -67.16 2.07 2 1 ASP A 53 ? ? -68.99 -175.54 3 1 THR B 46 ? ? -146.81 -13.64 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A CYS 20 ? A CYS 1 2 1 Y 1 A THR 21 ? A THR 2 3 1 Y 1 A HIS 79 ? A HIS 60 4 1 Y 1 A HIS 80 ? A HIS 61 5 1 Y 1 A HIS 81 ? A HIS 62 6 1 Y 1 B CYS 20 ? B CYS 1 7 1 Y 1 B HIS 79 ? B HIS 60 8 1 Y 1 B HIS 80 ? B HIS 61 9 1 Y 1 B HIS 81 ? B HIS 62 10 1 Y 1 C CYS 20 ? C CYS 1 11 1 Y 1 C HIS 79 ? C HIS 60 12 1 Y 1 C HIS 80 ? C HIS 61 13 1 Y 1 C HIS 81 ? C HIS 62 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #