data_2RDC # _entry.id 2RDC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2RDC pdb_00002rdc 10.2210/pdb2rdc/pdb RCSB RCSB044723 ? ? WWPDB D_1000044723 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 372393 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2RDC _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-09-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of protein of unknown function (NP_951123.1) from Geobacter sulfurreducens at 1.80 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2RDC _cell.length_a 49.190 _cell.length_b 116.250 _cell.length_c 97.310 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2RDC _symmetry.Int_Tables_number 20 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 17654.324 2 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 5 water nat water 18.015 126 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)QQPTASVVSYVAEYHKATETT(MSE)GRYKKVIEITGHDEVAAKLLEGLIDAGTRYFSKVVE(MSE)EHR (MSE)ASARFRLDGEELRELTETLDRSRRLAHESLISSLHVFNRYIVKEYGEELKEAGIEGGIFPKPEANRDRIAIADWA GELLTGIYENRHR ; _entity_poly.pdbx_seq_one_letter_code_can ;GMQQPTASVVSYVAEYHKATETTMGRYKKVIEITGHDEVAAKLLEGLIDAGTRYFSKVVEMEHRMASARFRLDGEELREL TETLDRSRRLAHESLISSLHVFNRYIVKEYGEELKEAGIEGGIFPKPEANRDRIAIADWAGELLTGIYENRHR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 372393 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 GLN n 1 4 GLN n 1 5 PRO n 1 6 THR n 1 7 ALA n 1 8 SER n 1 9 VAL n 1 10 VAL n 1 11 SER n 1 12 TYR n 1 13 VAL n 1 14 ALA n 1 15 GLU n 1 16 TYR n 1 17 HIS n 1 18 LYS n 1 19 ALA n 1 20 THR n 1 21 GLU n 1 22 THR n 1 23 THR n 1 24 MSE n 1 25 GLY n 1 26 ARG n 1 27 TYR n 1 28 LYS n 1 29 LYS n 1 30 VAL n 1 31 ILE n 1 32 GLU n 1 33 ILE n 1 34 THR n 1 35 GLY n 1 36 HIS n 1 37 ASP n 1 38 GLU n 1 39 VAL n 1 40 ALA n 1 41 ALA n 1 42 LYS n 1 43 LEU n 1 44 LEU n 1 45 GLU n 1 46 GLY n 1 47 LEU n 1 48 ILE n 1 49 ASP n 1 50 ALA n 1 51 GLY n 1 52 THR n 1 53 ARG n 1 54 TYR n 1 55 PHE n 1 56 SER n 1 57 LYS n 1 58 VAL n 1 59 VAL n 1 60 GLU n 1 61 MSE n 1 62 GLU n 1 63 HIS n 1 64 ARG n 1 65 MSE n 1 66 ALA n 1 67 SER n 1 68 ALA n 1 69 ARG n 1 70 PHE n 1 71 ARG n 1 72 LEU n 1 73 ASP n 1 74 GLY n 1 75 GLU n 1 76 GLU n 1 77 LEU n 1 78 ARG n 1 79 GLU n 1 80 LEU n 1 81 THR n 1 82 GLU n 1 83 THR n 1 84 LEU n 1 85 ASP n 1 86 ARG n 1 87 SER n 1 88 ARG n 1 89 ARG n 1 90 LEU n 1 91 ALA n 1 92 HIS n 1 93 GLU n 1 94 SER n 1 95 LEU n 1 96 ILE n 1 97 SER n 1 98 SER n 1 99 LEU n 1 100 HIS n 1 101 VAL n 1 102 PHE n 1 103 ASN n 1 104 ARG n 1 105 TYR n 1 106 ILE n 1 107 VAL n 1 108 LYS n 1 109 GLU n 1 110 TYR n 1 111 GLY n 1 112 GLU n 1 113 GLU n 1 114 LEU n 1 115 LYS n 1 116 GLU n 1 117 ALA n 1 118 GLY n 1 119 ILE n 1 120 GLU n 1 121 GLY n 1 122 GLY n 1 123 ILE n 1 124 PHE n 1 125 PRO n 1 126 LYS n 1 127 PRO n 1 128 GLU n 1 129 ALA n 1 130 ASN n 1 131 ARG n 1 132 ASP n 1 133 ARG n 1 134 ILE n 1 135 ALA n 1 136 ILE n 1 137 ALA n 1 138 ASP n 1 139 TRP n 1 140 ALA n 1 141 GLY n 1 142 GLU n 1 143 LEU n 1 144 LEU n 1 145 THR n 1 146 GLY n 1 147 ILE n 1 148 TYR n 1 149 GLU n 1 150 ASN n 1 151 ARG n 1 152 HIS n 1 153 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Geobacter _entity_src_gen.pdbx_gene_src_gene 'NP_951123.1, GSU0061' _entity_src_gen.gene_src_species 'Geobacter sulfurreducens' _entity_src_gen.gene_src_strain 'PCA, DSM 12127' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacter sulfurreducens PCA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243231 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 51573 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name speedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q74H32_GEOSL _struct_ref.pdbx_db_accession Q74H32 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MQQPTASVVSYVAEYHKATETTMGRYKKVIEITGHDEVAAKLLEGLIDAGTRYFSKVVEMEHRMASARFRLDGEELRELT ETLDRSRRLAHESLISSLHVFNRYIVKEYGEELKEAGIEGGIFPKPEANRDRIAIADWAGELLTGIYENRHR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2RDC A 2 ? 153 ? Q74H32 1 ? 152 ? 1 152 2 1 2RDC B 2 ? 153 ? Q74H32 1 ? 152 ? 1 152 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2RDC GLY A 1 ? UNP Q74H32 ? ? 'expression tag' 0 1 2 2RDC GLY B 1 ? UNP Q74H32 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2RDC # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 37.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.07 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 28.6% 2-Methyl-2,4-pentanediol, 0.2M Lithium sulfate, 0.1M MES pH 6.07, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2007-08-31 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0000 1.0 2 0.9797 1.0 3 0.9796 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_wavelength_list '1.0000, 0.9797, 0.9796' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS # _reflns.entry_id 2RDC _reflns.d_resolution_high 1.80 _reflns.d_resolution_low 29.050 _reflns.number_obs 26165 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_netI_over_sigmaI 12.310 _reflns.percent_possible_obs 99.000 _reflns.B_iso_Wilson_estimate 25.65 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.80 1.86 6698 ? 4460 0.644 1.2 ? ? ? ? ? 95.30 ? 1 1.86 1.94 8655 ? 5345 0.485 1.6 ? ? ? ? ? 99.50 ? 2 1.94 2.03 8258 ? 5080 0.302 2.7 ? ? ? ? ? 99.60 ? 3 2.03 2.13 7579 ? 4643 0.178 4.4 ? ? ? ? ? 99.20 ? 4 2.13 2.27 8601 ? 5227 0.122 6.3 ? ? ? ? ? 99.50 ? 5 2.27 2.44 8001 ? 4813 0.085 9.1 ? ? ? ? ? 99.50 ? 6 2.44 2.69 8463 ? 5060 0.058 12.6 ? ? ? ? ? 99.50 ? 7 2.69 3.07 8216 ? 4891 0.037 18.5 ? ? ? ? ? 99.30 ? 8 3.07 3.87 8359 ? 5039 0.022 29.1 ? ? ? ? ? 99.50 ? 9 3.87 29.05 8477 ? 4974 0.016 37.0 ? ? ? ? ? 98.60 ? 10 # _refine.entry_id 2RDC _refine.ls_d_res_high 1.800 _refine.ls_d_res_low 29.050 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.560 _refine.ls_number_reflns_obs 26140 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. SO4, CL AND MPD FROM THE CRYSTALLIZATION SOLUTION ARE MODELED. ASSIGNMENT OF MPD IS TENTATIVE SINCE IT IS IN CLOSE CONTACT WITH PROTEIN. THE RESIDUE TYR 53 NEARBY IS HIGHLY CONSERVED. 4. RESIDUES A0-19, B0-17 ARE DISORDERED AND NOT MODELED. THE REGIONS 125-132 FOR BOTH CHAINS A AND B ARE POOR. ; _refine.ls_R_factor_obs 0.194 _refine.ls_R_factor_R_work 0.193 _refine.ls_R_factor_R_free 0.224 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1328 _refine.B_iso_mean 27.278 _refine.aniso_B[1][1] -0.310 _refine.aniso_B[2][2] -2.020 _refine.aniso_B[3][3] 2.320 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.pdbx_overall_ESU_R 0.136 _refine.pdbx_overall_ESU_R_Free 0.126 _refine.overall_SU_ML 0.102 _refine.overall_SU_B 3.358 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2104 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 2250 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 29.050 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2230 0.017 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1552 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3019 1.405 1.966 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3738 0.979 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 287 5.210 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 110 30.852 22.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 400 14.587 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 28 14.704 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 331 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2515 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 499 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 523 0.224 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1573 0.189 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1103 0.184 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 1152 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 125 0.157 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 10 0.171 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 55 0.301 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 6 0.180 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1504 2.648 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 563 0.592 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2166 3.600 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 941 5.932 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 842 8.144 11.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 'LOOSE POSITIONAL' A 1633 1.380 5.000 1 'X-RAY DIFFRACTION' 1 ? ? ? 2 'LOOSE THERMAL' B 1633 3.880 10.000 1 'X-RAY DIFFRACTION' 2 ? ? ? # _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.530 _refine_ls_shell.number_reflns_R_work 1790 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.304 _refine_ls_shell.R_factor_R_free 0.363 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 85 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1875 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 1 A 21 A 153 6 . . GLU ARG A 20 A 152 1 ? 2 1 B 21 B 153 6 . . GLU ARG B 20 B 152 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2RDC _struct.title 'CRYSTAL STRUCTURE OF A PUTATIVE LIPID BINDING PROTEIN (GSU0061) FROM GEOBACTER SULFURREDUCENS PCA AT 1.80 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, LIPID BINDING PROTEIN' _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' _struct_keywords.entry_id 2RDC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 2 ? H N N 5 ? I N N 5 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY AND PACKING ANALYSIS SUPPORT THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 22 ? GLY A 35 ? THR A 21 GLY A 34 1 ? 14 HELX_P HELX_P2 2 ASP A 37 ? ARG A 69 ? ASP A 36 ARG A 68 1 ? 33 HELX_P HELX_P3 3 ASP A 73 ? ALA A 117 ? ASP A 72 ALA A 116 1 ? 45 HELX_P HELX_P4 4 ALA A 135 ? ASN A 150 ? ALA A 134 ASN A 149 1 ? 16 HELX_P HELX_P5 5 THR B 22 ? GLY B 35 ? THR B 21 GLY B 34 1 ? 14 HELX_P HELX_P6 6 ASP B 37 ? ALA B 68 ? ASP B 36 ALA B 67 1 ? 32 HELX_P HELX_P7 7 ARG B 69 ? ARG B 71 ? ARG B 68 ARG B 70 5 ? 3 HELX_P HELX_P8 8 ASP B 73 ? ALA B 117 ? ASP B 72 ALA B 116 1 ? 45 HELX_P HELX_P9 9 ASP B 132 ? ASN B 150 ? ASP B 131 ASN B 149 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A THR 23 C ? ? ? 1_555 A MSE 24 N ? ? A THR 22 A MSE 23 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A MSE 24 C ? ? ? 1_555 A GLY 25 N ? ? A MSE 23 A GLY 24 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A GLU 60 C ? ? ? 1_555 A MSE 61 N ? ? A GLU 59 A MSE 60 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? A MSE 61 C ? ? ? 1_555 A GLU 62 N ? ? A MSE 60 A GLU 61 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale5 covale both ? A ARG 64 C ? ? ? 1_555 A MSE 65 N ? ? A ARG 63 A MSE 64 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale6 covale both ? A MSE 65 C ? ? ? 1_555 A ALA 66 N ? ? A MSE 64 A ALA 65 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale7 covale both ? B THR 23 C ? ? ? 1_555 B MSE 24 N ? ? B THR 22 B MSE 23 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? B MSE 24 C ? ? ? 1_555 B GLY 25 N ? ? B MSE 23 B GLY 24 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? B GLU 60 C ? ? ? 1_555 B MSE 61 N ? ? B GLU 59 B MSE 60 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? B MSE 61 C ? ? ? 1_555 B GLU 62 N ? ? B MSE 60 B GLU 61 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale11 covale both ? B ARG 64 C ? ? ? 1_555 B MSE 65 N ? ? B ARG 63 B MSE 64 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale12 covale both ? B MSE 65 C ? ? ? 1_555 B ALA 66 N ? ? B MSE 64 B ALA 65 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SO4 153 ? 5 'BINDING SITE FOR RESIDUE SO4 B 153' AC2 Software B SO4 154 ? 5 'BINDING SITE FOR RESIDUE SO4 B 154' AC3 Software B CL 155 ? 2 'BINDING SITE FOR RESIDUE CL B 155' AC4 Software A CL 153 ? 3 'BINDING SITE FOR RESIDUE CL A 153' AC5 Software A MPD 154 ? 9 'BINDING SITE FOR RESIDUE MPD A 154' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS B 100 ? HIS B 99 . ? 1_555 ? 2 AC1 5 ARG B 104 ? ARG B 103 . ? 1_555 ? 3 AC1 5 ARG B 131 ? ARG B 130 . ? 1_555 ? 4 AC1 5 HOH I . ? HOH B 183 . ? 1_555 ? 5 AC1 5 HOH I . ? HOH B 229 . ? 1_555 ? 6 AC2 5 TYR B 54 ? TYR B 53 . ? 1_555 ? 7 AC2 5 ARG B 88 ? ARG B 87 . ? 1_555 ? 8 AC2 5 ARG B 89 ? ARG B 88 . ? 1_555 ? 9 AC2 5 HIS B 92 ? HIS B 91 . ? 1_555 ? 10 AC2 5 ARG B 133 ? ARG B 132 . ? 1_555 ? 11 AC3 2 ARG B 26 ? ARG B 25 . ? 1_555 ? 12 AC3 2 GLU B 120 ? GLU B 119 . ? 1_555 ? 13 AC4 3 ARG A 26 ? ARG A 25 . ? 1_555 ? 14 AC4 3 GLY A 121 ? GLY A 120 . ? 1_555 ? 15 AC4 3 LYS A 126 ? LYS A 125 . ? 1_555 ? 16 AC5 9 TYR A 54 ? TYR A 53 . ? 1_555 ? 17 AC5 9 ARG A 88 ? ARG A 87 . ? 1_555 ? 18 AC5 9 HIS A 92 ? HIS A 91 . ? 1_555 ? 19 AC5 9 ALA A 135 ? ALA A 134 . ? 1_555 ? 20 AC5 9 ALA A 137 ? ALA A 136 . ? 1_555 ? 21 AC5 9 HOH H . ? HOH A 162 . ? 1_555 ? 22 AC5 9 HOH H . ? HOH A 200 . ? 3_555 ? 23 AC5 9 ARG B 151 ? ARG B 150 . ? 1_555 ? 24 AC5 9 ARG B 153 ? ARG B 152 . ? 3_555 ? # _atom_sites.entry_id 2RDC _atom_sites.fract_transf_matrix[1][1] 0.020329 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008602 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010276 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 GLN 3 2 ? ? ? A . n A 1 4 GLN 4 3 ? ? ? A . n A 1 5 PRO 5 4 ? ? ? A . n A 1 6 THR 6 5 ? ? ? A . n A 1 7 ALA 7 6 ? ? ? A . n A 1 8 SER 8 7 ? ? ? A . n A 1 9 VAL 9 8 ? ? ? A . n A 1 10 VAL 10 9 ? ? ? A . n A 1 11 SER 11 10 ? ? ? A . n A 1 12 TYR 12 11 ? ? ? A . n A 1 13 VAL 13 12 ? ? ? A . n A 1 14 ALA 14 13 ? ? ? A . n A 1 15 GLU 15 14 ? ? ? A . n A 1 16 TYR 16 15 ? ? ? A . n A 1 17 HIS 17 16 ? ? ? A . n A 1 18 LYS 18 17 ? ? ? A . n A 1 19 ALA 19 18 ? ? ? A . n A 1 20 THR 20 19 ? ? ? A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 THR 22 21 21 THR THR A . n A 1 23 THR 23 22 22 THR THR A . n A 1 24 MSE 24 23 23 MSE MSE A . n A 1 25 GLY 25 24 24 GLY GLY A . n A 1 26 ARG 26 25 25 ARG ARG A . n A 1 27 TYR 27 26 26 TYR TYR A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 VAL 30 29 29 VAL VAL A . n A 1 31 ILE 31 30 30 ILE ILE A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 ILE 33 32 32 ILE ILE A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 GLY 35 34 34 GLY GLY A . n A 1 36 HIS 36 35 35 HIS HIS A . n A 1 37 ASP 37 36 36 ASP ASP A . n A 1 38 GLU 38 37 37 GLU GLU A . n A 1 39 VAL 39 38 38 VAL VAL A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 ALA 41 40 40 ALA ALA A . n A 1 42 LYS 42 41 41 LYS LYS A . n A 1 43 LEU 43 42 42 LEU LEU A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 GLU 45 44 44 GLU GLU A . n A 1 46 GLY 46 45 45 GLY GLY A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 ILE 48 47 47 ILE ILE A . n A 1 49 ASP 49 48 48 ASP ASP A . n A 1 50 ALA 50 49 49 ALA ALA A . n A 1 51 GLY 51 50 50 GLY GLY A . n A 1 52 THR 52 51 51 THR THR A . n A 1 53 ARG 53 52 52 ARG ARG A . n A 1 54 TYR 54 53 53 TYR TYR A . n A 1 55 PHE 55 54 54 PHE PHE A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 LYS 57 56 56 LYS LYS A . n A 1 58 VAL 58 57 57 VAL VAL A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 GLU 60 59 59 GLU GLU A . n A 1 61 MSE 61 60 60 MSE MSE A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 HIS 63 62 62 HIS HIS A . n A 1 64 ARG 64 63 63 ARG ARG A . n A 1 65 MSE 65 64 64 MSE MSE A . n A 1 66 ALA 66 65 65 ALA ALA A . n A 1 67 SER 67 66 66 SER SER A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 PHE 70 69 69 PHE PHE A . n A 1 71 ARG 71 70 70 ARG ARG A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 ASP 73 72 72 ASP ASP A . n A 1 74 GLY 74 73 73 GLY GLY A . n A 1 75 GLU 75 74 74 GLU GLU A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 ARG 78 77 77 ARG ARG A . n A 1 79 GLU 79 78 78 GLU GLU A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 THR 81 80 80 THR THR A . n A 1 82 GLU 82 81 81 GLU GLU A . n A 1 83 THR 83 82 82 THR THR A . n A 1 84 LEU 84 83 83 LEU LEU A . n A 1 85 ASP 85 84 84 ASP ASP A . n A 1 86 ARG 86 85 85 ARG ARG A . n A 1 87 SER 87 86 86 SER SER A . n A 1 88 ARG 88 87 87 ARG ARG A . n A 1 89 ARG 89 88 88 ARG ARG A . n A 1 90 LEU 90 89 89 LEU LEU A . n A 1 91 ALA 91 90 90 ALA ALA A . n A 1 92 HIS 92 91 91 HIS HIS A . n A 1 93 GLU 93 92 92 GLU GLU A . n A 1 94 SER 94 93 93 SER SER A . n A 1 95 LEU 95 94 94 LEU LEU A . n A 1 96 ILE 96 95 95 ILE ILE A . n A 1 97 SER 97 96 96 SER SER A . n A 1 98 SER 98 97 97 SER SER A . n A 1 99 LEU 99 98 98 LEU LEU A . n A 1 100 HIS 100 99 99 HIS HIS A . n A 1 101 VAL 101 100 100 VAL VAL A . n A 1 102 PHE 102 101 101 PHE PHE A . n A 1 103 ASN 103 102 102 ASN ASN A . n A 1 104 ARG 104 103 103 ARG ARG A . n A 1 105 TYR 105 104 104 TYR TYR A . n A 1 106 ILE 106 105 105 ILE ILE A . n A 1 107 VAL 107 106 106 VAL VAL A . n A 1 108 LYS 108 107 107 LYS LYS A . n A 1 109 GLU 109 108 108 GLU GLU A . n A 1 110 TYR 110 109 109 TYR TYR A . n A 1 111 GLY 111 110 110 GLY GLY A . n A 1 112 GLU 112 111 111 GLU GLU A . n A 1 113 GLU 113 112 112 GLU GLU A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 LYS 115 114 114 LYS LYS A . n A 1 116 GLU 116 115 115 GLU GLU A . n A 1 117 ALA 117 116 116 ALA ALA A . n A 1 118 GLY 118 117 117 GLY GLY A . n A 1 119 ILE 119 118 118 ILE ILE A . n A 1 120 GLU 120 119 119 GLU GLU A . n A 1 121 GLY 121 120 120 GLY GLY A . n A 1 122 GLY 122 121 121 GLY GLY A . n A 1 123 ILE 123 122 122 ILE ILE A . n A 1 124 PHE 124 123 123 PHE PHE A . n A 1 125 PRO 125 124 124 PRO PRO A . n A 1 126 LYS 126 125 125 LYS LYS A . n A 1 127 PRO 127 126 126 PRO PRO A . n A 1 128 GLU 128 127 127 GLU GLU A . n A 1 129 ALA 129 128 128 ALA ALA A . n A 1 130 ASN 130 129 129 ASN ASN A . n A 1 131 ARG 131 130 130 ARG ARG A . n A 1 132 ASP 132 131 131 ASP ASP A . n A 1 133 ARG 133 132 132 ARG ARG A . n A 1 134 ILE 134 133 133 ILE ILE A . n A 1 135 ALA 135 134 134 ALA ALA A . n A 1 136 ILE 136 135 135 ILE ILE A . n A 1 137 ALA 137 136 136 ALA ALA A . n A 1 138 ASP 138 137 137 ASP ASP A . n A 1 139 TRP 139 138 138 TRP TRP A . n A 1 140 ALA 140 139 139 ALA ALA A . n A 1 141 GLY 141 140 140 GLY GLY A . n A 1 142 GLU 142 141 141 GLU GLU A . n A 1 143 LEU 143 142 142 LEU LEU A . n A 1 144 LEU 144 143 143 LEU LEU A . n A 1 145 THR 145 144 144 THR THR A . n A 1 146 GLY 146 145 145 GLY GLY A . n A 1 147 ILE 147 146 146 ILE ILE A . n A 1 148 TYR 148 147 147 TYR TYR A . n A 1 149 GLU 149 148 148 GLU GLU A . n A 1 150 ASN 150 149 149 ASN ASN A . n A 1 151 ARG 151 150 150 ARG ARG A . n A 1 152 HIS 152 151 151 HIS HIS A . n A 1 153 ARG 153 152 152 ARG ARG A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MSE 2 1 ? ? ? B . n B 1 3 GLN 3 2 ? ? ? B . n B 1 4 GLN 4 3 ? ? ? B . n B 1 5 PRO 5 4 ? ? ? B . n B 1 6 THR 6 5 ? ? ? B . n B 1 7 ALA 7 6 ? ? ? B . n B 1 8 SER 8 7 ? ? ? B . n B 1 9 VAL 9 8 ? ? ? B . n B 1 10 VAL 10 9 ? ? ? B . n B 1 11 SER 11 10 ? ? ? B . n B 1 12 TYR 12 11 ? ? ? B . n B 1 13 VAL 13 12 ? ? ? B . n B 1 14 ALA 14 13 ? ? ? B . n B 1 15 GLU 15 14 ? ? ? B . n B 1 16 TYR 16 15 ? ? ? B . n B 1 17 HIS 17 16 ? ? ? B . n B 1 18 LYS 18 17 ? ? ? B . n B 1 19 ALA 19 18 18 ALA ALA B . n B 1 20 THR 20 19 19 THR THR B . n B 1 21 GLU 21 20 20 GLU GLU B . n B 1 22 THR 22 21 21 THR THR B . n B 1 23 THR 23 22 22 THR THR B . n B 1 24 MSE 24 23 23 MSE MSE B . n B 1 25 GLY 25 24 24 GLY GLY B . n B 1 26 ARG 26 25 25 ARG ARG B . n B 1 27 TYR 27 26 26 TYR TYR B . n B 1 28 LYS 28 27 27 LYS LYS B . n B 1 29 LYS 29 28 28 LYS LYS B . n B 1 30 VAL 30 29 29 VAL VAL B . n B 1 31 ILE 31 30 30 ILE ILE B . n B 1 32 GLU 32 31 31 GLU GLU B . n B 1 33 ILE 33 32 32 ILE ILE B . n B 1 34 THR 34 33 33 THR THR B . n B 1 35 GLY 35 34 34 GLY GLY B . n B 1 36 HIS 36 35 35 HIS HIS B . n B 1 37 ASP 37 36 36 ASP ASP B . n B 1 38 GLU 38 37 37 GLU GLU B . n B 1 39 VAL 39 38 38 VAL VAL B . n B 1 40 ALA 40 39 39 ALA ALA B . n B 1 41 ALA 41 40 40 ALA ALA B . n B 1 42 LYS 42 41 41 LYS LYS B . n B 1 43 LEU 43 42 42 LEU LEU B . n B 1 44 LEU 44 43 43 LEU LEU B . n B 1 45 GLU 45 44 44 GLU GLU B . n B 1 46 GLY 46 45 45 GLY GLY B . n B 1 47 LEU 47 46 46 LEU LEU B . n B 1 48 ILE 48 47 47 ILE ILE B . n B 1 49 ASP 49 48 48 ASP ASP B . n B 1 50 ALA 50 49 49 ALA ALA B . n B 1 51 GLY 51 50 50 GLY GLY B . n B 1 52 THR 52 51 51 THR THR B . n B 1 53 ARG 53 52 52 ARG ARG B . n B 1 54 TYR 54 53 53 TYR TYR B . n B 1 55 PHE 55 54 54 PHE PHE B . n B 1 56 SER 56 55 55 SER SER B . n B 1 57 LYS 57 56 56 LYS LYS B . n B 1 58 VAL 58 57 57 VAL VAL B . n B 1 59 VAL 59 58 58 VAL VAL B . n B 1 60 GLU 60 59 59 GLU GLU B . n B 1 61 MSE 61 60 60 MSE MSE B . n B 1 62 GLU 62 61 61 GLU GLU B . n B 1 63 HIS 63 62 62 HIS HIS B . n B 1 64 ARG 64 63 63 ARG ARG B . n B 1 65 MSE 65 64 64 MSE MSE B . n B 1 66 ALA 66 65 65 ALA ALA B . n B 1 67 SER 67 66 66 SER SER B . n B 1 68 ALA 68 67 67 ALA ALA B . n B 1 69 ARG 69 68 68 ARG ARG B . n B 1 70 PHE 70 69 69 PHE PHE B . n B 1 71 ARG 71 70 70 ARG ARG B . n B 1 72 LEU 72 71 71 LEU LEU B . n B 1 73 ASP 73 72 72 ASP ASP B . n B 1 74 GLY 74 73 73 GLY GLY B . n B 1 75 GLU 75 74 74 GLU GLU B . n B 1 76 GLU 76 75 75 GLU GLU B . n B 1 77 LEU 77 76 76 LEU LEU B . n B 1 78 ARG 78 77 77 ARG ARG B . n B 1 79 GLU 79 78 78 GLU GLU B . n B 1 80 LEU 80 79 79 LEU LEU B . n B 1 81 THR 81 80 80 THR THR B . n B 1 82 GLU 82 81 81 GLU GLU B . n B 1 83 THR 83 82 82 THR THR B . n B 1 84 LEU 84 83 83 LEU LEU B . n B 1 85 ASP 85 84 84 ASP ASP B . n B 1 86 ARG 86 85 85 ARG ARG B . n B 1 87 SER 87 86 86 SER SER B . n B 1 88 ARG 88 87 87 ARG ARG B . n B 1 89 ARG 89 88 88 ARG ARG B . n B 1 90 LEU 90 89 89 LEU LEU B . n B 1 91 ALA 91 90 90 ALA ALA B . n B 1 92 HIS 92 91 91 HIS HIS B . n B 1 93 GLU 93 92 92 GLU GLU B . n B 1 94 SER 94 93 93 SER SER B . n B 1 95 LEU 95 94 94 LEU LEU B . n B 1 96 ILE 96 95 95 ILE ILE B . n B 1 97 SER 97 96 96 SER SER B . n B 1 98 SER 98 97 97 SER SER B . n B 1 99 LEU 99 98 98 LEU LEU B . n B 1 100 HIS 100 99 99 HIS HIS B . n B 1 101 VAL 101 100 100 VAL VAL B . n B 1 102 PHE 102 101 101 PHE PHE B . n B 1 103 ASN 103 102 102 ASN ASN B . n B 1 104 ARG 104 103 103 ARG ARG B . n B 1 105 TYR 105 104 104 TYR TYR B . n B 1 106 ILE 106 105 105 ILE ILE B . n B 1 107 VAL 107 106 106 VAL VAL B . n B 1 108 LYS 108 107 107 LYS LYS B . n B 1 109 GLU 109 108 108 GLU GLU B . n B 1 110 TYR 110 109 109 TYR TYR B . n B 1 111 GLY 111 110 110 GLY GLY B . n B 1 112 GLU 112 111 111 GLU GLU B . n B 1 113 GLU 113 112 112 GLU GLU B . n B 1 114 LEU 114 113 113 LEU LEU B . n B 1 115 LYS 115 114 114 LYS LYS B . n B 1 116 GLU 116 115 115 GLU GLU B . n B 1 117 ALA 117 116 116 ALA ALA B . n B 1 118 GLY 118 117 117 GLY GLY B . n B 1 119 ILE 119 118 118 ILE ILE B . n B 1 120 GLU 120 119 119 GLU GLU B . n B 1 121 GLY 121 120 120 GLY GLY B . n B 1 122 GLY 122 121 121 GLY GLY B . n B 1 123 ILE 123 122 122 ILE ILE B . n B 1 124 PHE 124 123 123 PHE PHE B . n B 1 125 PRO 125 124 124 PRO PRO B . n B 1 126 LYS 126 125 125 LYS LYS B . n B 1 127 PRO 127 126 126 PRO PRO B . n B 1 128 GLU 128 127 127 GLU GLU B . n B 1 129 ALA 129 128 128 ALA ALA B . n B 1 130 ASN 130 129 129 ASN ASN B . n B 1 131 ARG 131 130 130 ARG ARG B . n B 1 132 ASP 132 131 131 ASP ASP B . n B 1 133 ARG 133 132 132 ARG ARG B . n B 1 134 ILE 134 133 133 ILE ILE B . n B 1 135 ALA 135 134 134 ALA ALA B . n B 1 136 ILE 136 135 135 ILE ILE B . n B 1 137 ALA 137 136 136 ALA ALA B . n B 1 138 ASP 138 137 137 ASP ASP B . n B 1 139 TRP 139 138 138 TRP TRP B . n B 1 140 ALA 140 139 139 ALA ALA B . n B 1 141 GLY 141 140 140 GLY GLY B . n B 1 142 GLU 142 141 141 GLU GLU B . n B 1 143 LEU 143 142 142 LEU LEU B . n B 1 144 LEU 144 143 143 LEU LEU B . n B 1 145 THR 145 144 144 THR THR B . n B 1 146 GLY 146 145 145 GLY GLY B . n B 1 147 ILE 147 146 146 ILE ILE B . n B 1 148 TYR 148 147 147 TYR TYR B . n B 1 149 GLU 149 148 148 GLU GLU B . n B 1 150 ASN 150 149 149 ASN ASN B . n B 1 151 ARG 151 150 150 ARG ARG B . n B 1 152 HIS 152 151 151 HIS HIS B . n B 1 153 ARG 153 152 152 ARG ARG B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 153 5 CL CL A . D 3 MPD 1 154 3 MPD MPD A . E 4 SO4 1 153 1 SO4 SO4 B . F 4 SO4 1 154 2 SO4 SO4 B . G 2 CL 1 155 4 CL CL B . H 5 HOH 1 155 12 HOH HOH A . H 5 HOH 2 156 14 HOH HOH A . H 5 HOH 3 157 15 HOH HOH A . H 5 HOH 4 158 16 HOH HOH A . H 5 HOH 5 159 17 HOH HOH A . H 5 HOH 6 160 18 HOH HOH A . H 5 HOH 7 161 19 HOH HOH A . H 5 HOH 8 162 24 HOH HOH A . H 5 HOH 9 163 26 HOH HOH A . H 5 HOH 10 164 29 HOH HOH A . H 5 HOH 11 165 32 HOH HOH A . H 5 HOH 12 166 34 HOH HOH A . H 5 HOH 13 167 37 HOH HOH A . H 5 HOH 14 168 41 HOH HOH A . H 5 HOH 15 169 46 HOH HOH A . H 5 HOH 16 170 48 HOH HOH A . H 5 HOH 17 171 50 HOH HOH A . H 5 HOH 18 172 52 HOH HOH A . H 5 HOH 19 173 56 HOH HOH A . H 5 HOH 20 174 57 HOH HOH A . H 5 HOH 21 175 59 HOH HOH A . H 5 HOH 22 176 61 HOH HOH A . H 5 HOH 23 177 63 HOH HOH A . H 5 HOH 24 178 69 HOH HOH A . H 5 HOH 25 179 74 HOH HOH A . H 5 HOH 26 180 75 HOH HOH A . H 5 HOH 27 181 78 HOH HOH A . H 5 HOH 28 182 82 HOH HOH A . H 5 HOH 29 183 90 HOH HOH A . H 5 HOH 30 184 95 HOH HOH A . H 5 HOH 31 185 98 HOH HOH A . H 5 HOH 32 186 100 HOH HOH A . H 5 HOH 33 187 101 HOH HOH A . H 5 HOH 34 188 105 HOH HOH A . H 5 HOH 35 189 107 HOH HOH A . H 5 HOH 36 190 108 HOH HOH A . H 5 HOH 37 191 110 HOH HOH A . H 5 HOH 38 192 111 HOH HOH A . H 5 HOH 39 193 112 HOH HOH A . H 5 HOH 40 194 113 HOH HOH A . H 5 HOH 41 195 115 HOH HOH A . H 5 HOH 42 196 116 HOH HOH A . H 5 HOH 43 197 118 HOH HOH A . H 5 HOH 44 198 119 HOH HOH A . H 5 HOH 45 199 120 HOH HOH A . H 5 HOH 46 200 123 HOH HOH A . H 5 HOH 47 201 124 HOH HOH A . H 5 HOH 48 202 126 HOH HOH A . H 5 HOH 49 203 127 HOH HOH A . H 5 HOH 50 204 130 HOH HOH A . H 5 HOH 51 205 131 HOH HOH A . I 5 HOH 1 156 6 HOH HOH B . I 5 HOH 2 157 7 HOH HOH B . I 5 HOH 3 158 8 HOH HOH B . I 5 HOH 4 159 9 HOH HOH B . I 5 HOH 5 160 10 HOH HOH B . I 5 HOH 6 161 11 HOH HOH B . I 5 HOH 7 162 13 HOH HOH B . I 5 HOH 8 163 20 HOH HOH B . I 5 HOH 9 164 21 HOH HOH B . I 5 HOH 10 165 22 HOH HOH B . I 5 HOH 11 166 23 HOH HOH B . I 5 HOH 12 167 25 HOH HOH B . I 5 HOH 13 168 27 HOH HOH B . I 5 HOH 14 169 28 HOH HOH B . I 5 HOH 15 170 30 HOH HOH B . I 5 HOH 16 171 31 HOH HOH B . I 5 HOH 17 172 33 HOH HOH B . I 5 HOH 18 173 35 HOH HOH B . I 5 HOH 19 174 36 HOH HOH B . I 5 HOH 20 175 38 HOH HOH B . I 5 HOH 21 176 39 HOH HOH B . I 5 HOH 22 177 40 HOH HOH B . I 5 HOH 23 178 42 HOH HOH B . I 5 HOH 24 179 43 HOH HOH B . I 5 HOH 25 180 44 HOH HOH B . I 5 HOH 26 181 45 HOH HOH B . I 5 HOH 27 182 47 HOH HOH B . I 5 HOH 28 183 49 HOH HOH B . I 5 HOH 29 184 51 HOH HOH B . I 5 HOH 30 185 53 HOH HOH B . I 5 HOH 31 186 54 HOH HOH B . I 5 HOH 32 187 55 HOH HOH B . I 5 HOH 33 188 58 HOH HOH B . I 5 HOH 34 189 60 HOH HOH B . I 5 HOH 35 190 62 HOH HOH B . I 5 HOH 36 191 64 HOH HOH B . I 5 HOH 37 192 65 HOH HOH B . I 5 HOH 38 193 66 HOH HOH B . I 5 HOH 39 194 67 HOH HOH B . I 5 HOH 40 195 68 HOH HOH B . I 5 HOH 41 196 70 HOH HOH B . I 5 HOH 42 197 71 HOH HOH B . I 5 HOH 43 198 72 HOH HOH B . I 5 HOH 44 199 73 HOH HOH B . I 5 HOH 45 200 76 HOH HOH B . I 5 HOH 46 201 77 HOH HOH B . I 5 HOH 47 202 79 HOH HOH B . I 5 HOH 48 203 80 HOH HOH B . I 5 HOH 49 204 81 HOH HOH B . I 5 HOH 50 205 83 HOH HOH B . I 5 HOH 51 206 84 HOH HOH B . I 5 HOH 52 207 85 HOH HOH B . I 5 HOH 53 208 86 HOH HOH B . I 5 HOH 54 209 87 HOH HOH B . I 5 HOH 55 210 88 HOH HOH B . I 5 HOH 56 211 89 HOH HOH B . I 5 HOH 57 212 91 HOH HOH B . I 5 HOH 58 213 92 HOH HOH B . I 5 HOH 59 214 93 HOH HOH B . I 5 HOH 60 215 94 HOH HOH B . I 5 HOH 61 216 96 HOH HOH B . I 5 HOH 62 217 97 HOH HOH B . I 5 HOH 63 218 99 HOH HOH B . I 5 HOH 64 219 102 HOH HOH B . I 5 HOH 65 220 103 HOH HOH B . I 5 HOH 66 221 104 HOH HOH B . I 5 HOH 67 222 106 HOH HOH B . I 5 HOH 68 223 109 HOH HOH B . I 5 HOH 69 224 114 HOH HOH B . I 5 HOH 70 225 117 HOH HOH B . I 5 HOH 71 226 121 HOH HOH B . I 5 HOH 72 227 122 HOH HOH B . I 5 HOH 73 228 125 HOH HOH B . I 5 HOH 74 229 128 HOH HOH B . I 5 HOH 75 230 129 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 24 A MSE 23 ? MET SELENOMETHIONINE 2 A MSE 61 A MSE 60 ? MET SELENOMETHIONINE 3 A MSE 65 A MSE 64 ? MET SELENOMETHIONINE 4 B MSE 24 B MSE 23 ? MET SELENOMETHIONINE 5 B MSE 61 B MSE 60 ? MET SELENOMETHIONINE 6 B MSE 65 B MSE 64 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 3410 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.3.0040 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 300 ; BIOMOLECULE: 1 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON BURIED SURFACE AREA. SIZE EXCLUSION CHROMATOGRAPHY AND PACKING ANALYSIS SUPPORT THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; 999 ; SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR B 19 ? ? -55.88 -6.13 2 1 ARG B 70 ? ? -149.87 -6.91 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 20 ? CG ? A GLU 21 CG 2 1 Y 1 A GLU 20 ? CD ? A GLU 21 CD 3 1 Y 1 A GLU 20 ? OE1 ? A GLU 21 OE1 4 1 Y 1 A GLU 20 ? OE2 ? A GLU 21 OE2 5 1 Y 1 A LYS 27 ? CD ? A LYS 28 CD 6 1 Y 1 A LYS 27 ? CE ? A LYS 28 CE 7 1 Y 1 A LYS 27 ? NZ ? A LYS 28 NZ 8 1 Y 1 A GLU 31 ? CD ? A GLU 32 CD 9 1 Y 1 A GLU 31 ? OE1 ? A GLU 32 OE1 10 1 Y 1 A GLU 31 ? OE2 ? A GLU 32 OE2 11 1 Y 1 A GLU 37 ? CD ? A GLU 38 CD 12 1 Y 1 A GLU 37 ? OE1 ? A GLU 38 OE1 13 1 Y 1 A GLU 37 ? OE2 ? A GLU 38 OE2 14 1 Y 1 A LYS 56 ? CD ? A LYS 57 CD 15 1 Y 1 A LYS 56 ? CE ? A LYS 57 CE 16 1 Y 1 A LYS 56 ? NZ ? A LYS 57 NZ 17 1 Y 1 A ARG 68 ? CZ ? A ARG 69 CZ 18 1 Y 1 A ARG 68 ? NH1 ? A ARG 69 NH1 19 1 Y 1 A ARG 68 ? NH2 ? A ARG 69 NH2 20 1 Y 1 A GLU 74 ? CD ? A GLU 75 CD 21 1 Y 1 A GLU 74 ? OE1 ? A GLU 75 OE1 22 1 Y 1 A GLU 74 ? OE2 ? A GLU 75 OE2 23 1 Y 1 A GLU 78 ? CD ? A GLU 79 CD 24 1 Y 1 A GLU 78 ? OE1 ? A GLU 79 OE1 25 1 Y 1 A GLU 78 ? OE2 ? A GLU 79 OE2 26 1 Y 1 A LYS 114 ? CG ? A LYS 115 CG 27 1 Y 1 A LYS 114 ? CD ? A LYS 115 CD 28 1 Y 1 A LYS 114 ? CE ? A LYS 115 CE 29 1 Y 1 A LYS 114 ? NZ ? A LYS 115 NZ 30 1 Y 1 A GLU 115 ? CD ? A GLU 116 CD 31 1 Y 1 A GLU 115 ? OE1 ? A GLU 116 OE1 32 1 Y 1 A GLU 115 ? OE2 ? A GLU 116 OE2 33 1 Y 1 A LYS 125 ? CG ? A LYS 126 CG 34 1 Y 1 A LYS 125 ? CD ? A LYS 126 CD 35 1 Y 1 A LYS 125 ? CE ? A LYS 126 CE 36 1 Y 1 A LYS 125 ? NZ ? A LYS 126 NZ 37 1 Y 1 A ASN 129 ? CG ? A ASN 130 CG 38 1 Y 1 A ASN 129 ? OD1 ? A ASN 130 OD1 39 1 Y 1 A ASN 129 ? ND2 ? A ASN 130 ND2 40 1 Y 1 A ARG 130 ? CG ? A ARG 131 CG 41 1 Y 1 A ARG 130 ? CD ? A ARG 131 CD 42 1 Y 1 A ARG 130 ? NE ? A ARG 131 NE 43 1 Y 1 A ARG 130 ? CZ ? A ARG 131 CZ 44 1 Y 1 A ARG 130 ? NH1 ? A ARG 131 NH1 45 1 Y 1 A ARG 130 ? NH2 ? A ARG 131 NH2 46 1 Y 1 B LYS 28 ? CD ? B LYS 29 CD 47 1 Y 1 B LYS 28 ? CE ? B LYS 29 CE 48 1 Y 1 B LYS 28 ? NZ ? B LYS 29 NZ 49 1 Y 1 B GLU 111 ? CD ? B GLU 112 CD 50 1 Y 1 B GLU 111 ? OE1 ? B GLU 112 OE1 51 1 Y 1 B GLU 111 ? OE2 ? B GLU 112 OE2 52 1 Y 1 B LYS 125 ? CG ? B LYS 126 CG 53 1 Y 1 B LYS 125 ? CD ? B LYS 126 CD 54 1 Y 1 B LYS 125 ? CE ? B LYS 126 CE 55 1 Y 1 B LYS 125 ? NZ ? B LYS 126 NZ 56 1 Y 1 B PRO 126 ? CB ? B PRO 127 CB 57 1 Y 1 B PRO 126 ? CG ? B PRO 127 CG 58 1 Y 1 B PRO 126 ? CD ? B PRO 127 CD 59 1 Y 1 B GLU 127 ? CG ? B GLU 128 CG 60 1 Y 1 B GLU 127 ? CD ? B GLU 128 CD 61 1 Y 1 B GLU 127 ? OE1 ? B GLU 128 OE1 62 1 Y 1 B GLU 127 ? OE2 ? B GLU 128 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A GLN 2 ? A GLN 3 4 1 Y 1 A GLN 3 ? A GLN 4 5 1 Y 1 A PRO 4 ? A PRO 5 6 1 Y 1 A THR 5 ? A THR 6 7 1 Y 1 A ALA 6 ? A ALA 7 8 1 Y 1 A SER 7 ? A SER 8 9 1 Y 1 A VAL 8 ? A VAL 9 10 1 Y 1 A VAL 9 ? A VAL 10 11 1 Y 1 A SER 10 ? A SER 11 12 1 Y 1 A TYR 11 ? A TYR 12 13 1 Y 1 A VAL 12 ? A VAL 13 14 1 Y 1 A ALA 13 ? A ALA 14 15 1 Y 1 A GLU 14 ? A GLU 15 16 1 Y 1 A TYR 15 ? A TYR 16 17 1 Y 1 A HIS 16 ? A HIS 17 18 1 Y 1 A LYS 17 ? A LYS 18 19 1 Y 1 A ALA 18 ? A ALA 19 20 1 Y 1 A THR 19 ? A THR 20 21 1 Y 1 B GLY 0 ? B GLY 1 22 1 Y 1 B MSE 1 ? B MSE 2 23 1 Y 1 B GLN 2 ? B GLN 3 24 1 Y 1 B GLN 3 ? B GLN 4 25 1 Y 1 B PRO 4 ? B PRO 5 26 1 Y 1 B THR 5 ? B THR 6 27 1 Y 1 B ALA 6 ? B ALA 7 28 1 Y 1 B SER 7 ? B SER 8 29 1 Y 1 B VAL 8 ? B VAL 9 30 1 Y 1 B VAL 9 ? B VAL 10 31 1 Y 1 B SER 10 ? B SER 11 32 1 Y 1 B TYR 11 ? B TYR 12 33 1 Y 1 B VAL 12 ? B VAL 13 34 1 Y 1 B ALA 13 ? B ALA 14 35 1 Y 1 B GLU 14 ? B GLU 15 36 1 Y 1 B TYR 15 ? B TYR 16 37 1 Y 1 B HIS 16 ? B HIS 17 38 1 Y 1 B LYS 17 ? B LYS 18 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 'SULFATE ION' SO4 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #