HEADER TOXIN 24-SEP-07 2RDH TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL SUPERANTIGEN-LIKE PROTEIN 11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPERANTIGEN-LIKE PROTEIN 11; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: US6610; SOURCE 5 GENE: SSL11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: AD494; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A-3C KEYWDS OB FOLD, BETA GRASP, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR M.C.CHUNG,B.D.WINES,H.BAKER,R.J.LANGLEY,E.N.BAKER,J.D.FRASER REVDAT 4 25-OCT-23 2RDH 1 REMARK REVDAT 3 13-JUL-11 2RDH 1 VERSN REVDAT 2 24-FEB-09 2RDH 1 VERSN REVDAT 1 18-DEC-07 2RDH 0 JRNL AUTH M.C.CHUNG,B.D.WINES,H.BAKER,R.J.LANGLEY,E.N.BAKER,J.D.FRASER JRNL TITL THE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL SUPERANTIGEN-LIKE JRNL TITL 2 PROTEIN 11 IN COMPLEX WITH SIALYL LEWIS X REVEALS THE JRNL TITL 3 MECHANISM FOR CELL BINDING AND IMMUNE INHIBITION JRNL REF MOL.MICROBIOL. V. 66 1342 2007 JRNL REFN ISSN 0950-382X JRNL PMID 18045383 JRNL DOI 10.1111/J.1365-2958.2007.05989.X REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 85991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4300 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4328 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 226 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6172 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 737 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.834 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6382 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8611 ; 1.426 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 784 ; 6.184 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 347 ;35.780 ;25.159 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1227 ;13.007 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;13.855 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 952 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4834 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2718 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4302 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 724 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.131 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 95 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.169 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3812 ; 0.859 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6210 ; 1.484 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2606 ; 2.368 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2390 ; 3.686 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 27 REMARK 3 RESIDUE RANGE : A 28 A 52 REMARK 3 RESIDUE RANGE : A 53 A 88 REMARK 3 RESIDUE RANGE : A 89 A 127 REMARK 3 RESIDUE RANGE : A 128 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1350 0.1530 3.8920 REMARK 3 T TENSOR REMARK 3 T11: -0.0808 T22: -0.0530 REMARK 3 T33: -0.0530 T12: -0.0222 REMARK 3 T13: 0.0029 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.4089 L22: 0.6663 REMARK 3 L33: 2.4496 L12: 0.0955 REMARK 3 L13: 0.0359 L23: -0.7647 REMARK 3 S TENSOR REMARK 3 S11: 0.0858 S12: -0.0036 S13: -0.0237 REMARK 3 S21: -0.0138 S22: -0.0810 S23: 0.0505 REMARK 3 S31: 0.1882 S32: -0.0130 S33: -0.0048 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 27 REMARK 3 RESIDUE RANGE : B 28 B 52 REMARK 3 RESIDUE RANGE : B 53 B 88 REMARK 3 RESIDUE RANGE : B 89 B 127 REMARK 3 RESIDUE RANGE : B 128 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3540 13.4660 35.5930 REMARK 3 T TENSOR REMARK 3 T11: -0.1094 T22: -0.0336 REMARK 3 T33: -0.0473 T12: 0.0406 REMARK 3 T13: -0.0108 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.2200 L22: 0.5019 REMARK 3 L33: 2.7800 L12: -0.1198 REMARK 3 L13: 1.2599 L23: -0.1581 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: 0.0910 S13: -0.1144 REMARK 3 S21: -0.0857 S22: 0.0252 S23: 0.0467 REMARK 3 S31: 0.0303 S32: 0.0885 S33: -0.0472 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 27 REMARK 3 RESIDUE RANGE : C 28 C 52 REMARK 3 RESIDUE RANGE : C 53 C 88 REMARK 3 RESIDUE RANGE : C 89 C 127 REMARK 3 RESIDUE RANGE : C 128 C 196 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0190 25.1840 2.2190 REMARK 3 T TENSOR REMARK 3 T11: -0.1104 T22: -0.0900 REMARK 3 T33: -0.0466 T12: -0.0289 REMARK 3 T13: -0.0040 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.6802 L22: 1.6644 REMARK 3 L33: 2.5737 L12: 0.1634 REMARK 3 L13: -0.6946 L23: -0.6173 REMARK 3 S TENSOR REMARK 3 S11: 0.0960 S12: -0.0654 S13: 0.2100 REMARK 3 S21: 0.2227 S22: -0.1477 S23: -0.0334 REMARK 3 S31: -0.1585 S32: 0.1032 S33: 0.0517 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 27 REMARK 3 RESIDUE RANGE : D 28 D 52 REMARK 3 RESIDUE RANGE : D 53 D 88 REMARK 3 RESIDUE RANGE : D 89 D 127 REMARK 3 RESIDUE RANGE : D 128 D 186 REMARK 3 ORIGIN FOR THE GROUP (A): -21.0290 37.5520 34.1530 REMARK 3 T TENSOR REMARK 3 T11: -0.0669 T22: -0.0081 REMARK 3 T33: -0.0128 T12: -0.0218 REMARK 3 T13: -0.0258 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.2265 L22: 1.0256 REMARK 3 L33: 1.2378 L12: -0.0322 REMARK 3 L13: -0.1423 L23: -0.8010 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: -0.0111 S13: -0.0010 REMARK 3 S21: -0.0173 S22: -0.0039 S23: 0.1152 REMARK 3 S31: 0.0227 S32: 0.0049 S33: 0.0087 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97907 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86026 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1M4V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M PEG3350, 0.2M NAH2PO4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.07600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2190 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 GLU A 4 REMARK 465 VAL A 5 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 GLY A 75 REMARK 465 ARG A 76 REMARK 465 GLN A 77 REMARK 465 ALA A 78 REMARK 465 SER B 1 REMARK 465 THR B 2 REMARK 465 LEU B 3 REMARK 465 GLU B 4 REMARK 465 VAL B 5 REMARK 465 ASP B 96 REMARK 465 SER C 1 REMARK 465 THR C 2 REMARK 465 LEU C 3 REMARK 465 GLU C 4 REMARK 465 SER D 1 REMARK 465 THR D 2 REMARK 465 LEU D 3 REMARK 465 GLU D 4 REMARK 465 VAL D 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 74 OG REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 52 CG CD CE NZ REMARK 470 ARG D 76 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 77 CG CD OE1 NE2 REMARK 470 ASP D 96 CG OD1 OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 195 ND2 REMARK 480 LEU C 133 CB CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER C 74 OE1 GLN C 77 2.12 REMARK 500 O HOH A 371 O HOH A 390 2.14 REMARK 500 NH2 ARG D 6 OE1 GLN D 11 2.15 REMARK 500 OE1 GLN B 111 O HOH B 342 2.17 REMARK 500 O HOH D 241 O HOH D 333 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 195 CG ASN A 195 ND2 -0.176 REMARK 500 LEU C 133 CB LEU C 133 CG 0.288 REMARK 500 LEU C 133 CG LEU C 133 CD1 -0.234 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 133 CB - CG - CD2 ANGL. DEV. = -24.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 153 -126.12 51.05 REMARK 500 ARG B 76 60.97 -114.96 REMARK 500 LYS B 153 -127.45 45.84 REMARK 500 LYS C 153 -124.87 50.93 REMARK 500 ARG D 76 4.26 -66.71 REMARK 500 LYS D 153 -126.22 50.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 198 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 23 OD1 REMARK 620 2 ASP D 23 OD2 49.7 REMARK 620 3 GLU D 132 OE2 112.2 138.4 REMARK 620 4 LYS D 136 NZ 154.8 151.2 61.8 REMARK 620 5 HOH D 229 O 100.9 57.1 142.9 94.4 REMARK 620 6 HOH D 369 O 69.5 82.0 56.8 116.6 125.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RDG RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH SIALYL LEWIS X DBREF 2RDH A 1 196 UNP A8E1U5 A8E1U5_STAAU 1 196 DBREF 2RDH B 1 196 UNP A8E1U5 A8E1U5_STAAU 1 196 DBREF 2RDH C 1 196 UNP A8E1U5 A8E1U5_STAAU 1 196 DBREF 2RDH D 1 196 UNP A8E1U5 A8E1U5_STAAU 1 196 SEQRES 1 A 196 SER THR LEU GLU VAL ARG SER GLN ALA THR GLN ASP LEU SEQRES 2 A 196 SER GLU TYR TYR ASN ARG PRO TYR PHE ASP LEU ARG ASN SEQRES 3 A 196 LEU SER GLY TYR ARG GLU GLY ASN THR VAL THR PHE ILE SEQRES 4 A 196 ASN HIS TYR GLN GLN THR ASP VAL LYS LEU GLU GLY LYS SEQRES 5 A 196 ASP LYS ASP LYS ILE LYS ASP GLY ASN ASN GLU ASN LEU SEQRES 6 A 196 ASP VAL PHE VAL VAL ARG GLU GLY SER GLY ARG GLN ALA SEQRES 7 A 196 ASP ASN ASN SER ILE GLY GLY ILE THR LYS THR ASN ARG SEQRES 8 A 196 THR GLN HIS ILE ASP THR VAL GLN ASN VAL ASN LEU LEU SEQRES 9 A 196 VAL SER LYS SER THR GLY GLN HIS THR THR SER VAL THR SEQRES 10 A 196 SER THR ASN TYR SER ILE TYR LYS GLU GLU ILE SER LEU SEQRES 11 A 196 LYS GLU LEU ASP PHE LYS LEU ARG LYS HIS LEU ILE ASP SEQRES 12 A 196 LYS HIS ASP LEU TYR LYS THR GLU PRO LYS ASP SER LYS SEQRES 13 A 196 ILE ARG VAL THR MET LYS ASN GLY ASP PHE TYR THR PHE SEQRES 14 A 196 GLU LEU ASN LYS LYS LEU GLN THR HIS ARG MET GLY ASP SEQRES 15 A 196 VAL ILE ASP GLY ARG ASN ILE GLU LYS ILE GLU VAL ASN SEQRES 16 A 196 LEU SEQRES 1 B 196 SER THR LEU GLU VAL ARG SER GLN ALA THR GLN ASP LEU SEQRES 2 B 196 SER GLU TYR TYR ASN ARG PRO TYR PHE ASP LEU ARG ASN SEQRES 3 B 196 LEU SER GLY TYR ARG GLU GLY ASN THR VAL THR PHE ILE SEQRES 4 B 196 ASN HIS TYR GLN GLN THR ASP VAL LYS LEU GLU GLY LYS SEQRES 5 B 196 ASP LYS ASP LYS ILE LYS ASP GLY ASN ASN GLU ASN LEU SEQRES 6 B 196 ASP VAL PHE VAL VAL ARG GLU GLY SER GLY ARG GLN ALA SEQRES 7 B 196 ASP ASN ASN SER ILE GLY GLY ILE THR LYS THR ASN ARG SEQRES 8 B 196 THR GLN HIS ILE ASP THR VAL GLN ASN VAL ASN LEU LEU SEQRES 9 B 196 VAL SER LYS SER THR GLY GLN HIS THR THR SER VAL THR SEQRES 10 B 196 SER THR ASN TYR SER ILE TYR LYS GLU GLU ILE SER LEU SEQRES 11 B 196 LYS GLU LEU ASP PHE LYS LEU ARG LYS HIS LEU ILE ASP SEQRES 12 B 196 LYS HIS ASP LEU TYR LYS THR GLU PRO LYS ASP SER LYS SEQRES 13 B 196 ILE ARG VAL THR MET LYS ASN GLY ASP PHE TYR THR PHE SEQRES 14 B 196 GLU LEU ASN LYS LYS LEU GLN THR HIS ARG MET GLY ASP SEQRES 15 B 196 VAL ILE ASP GLY ARG ASN ILE GLU LYS ILE GLU VAL ASN SEQRES 16 B 196 LEU SEQRES 1 C 196 SER THR LEU GLU VAL ARG SER GLN ALA THR GLN ASP LEU SEQRES 2 C 196 SER GLU TYR TYR ASN ARG PRO TYR PHE ASP LEU ARG ASN SEQRES 3 C 196 LEU SER GLY TYR ARG GLU GLY ASN THR VAL THR PHE ILE SEQRES 4 C 196 ASN HIS TYR GLN GLN THR ASP VAL LYS LEU GLU GLY LYS SEQRES 5 C 196 ASP LYS ASP LYS ILE LYS ASP GLY ASN ASN GLU ASN LEU SEQRES 6 C 196 ASP VAL PHE VAL VAL ARG GLU GLY SER GLY ARG GLN ALA SEQRES 7 C 196 ASP ASN ASN SER ILE GLY GLY ILE THR LYS THR ASN ARG SEQRES 8 C 196 THR GLN HIS ILE ASP THR VAL GLN ASN VAL ASN LEU LEU SEQRES 9 C 196 VAL SER LYS SER THR GLY GLN HIS THR THR SER VAL THR SEQRES 10 C 196 SER THR ASN TYR SER ILE TYR LYS GLU GLU ILE SER LEU SEQRES 11 C 196 LYS GLU LEU ASP PHE LYS LEU ARG LYS HIS LEU ILE ASP SEQRES 12 C 196 LYS HIS ASP LEU TYR LYS THR GLU PRO LYS ASP SER LYS SEQRES 13 C 196 ILE ARG VAL THR MET LYS ASN GLY ASP PHE TYR THR PHE SEQRES 14 C 196 GLU LEU ASN LYS LYS LEU GLN THR HIS ARG MET GLY ASP SEQRES 15 C 196 VAL ILE ASP GLY ARG ASN ILE GLU LYS ILE GLU VAL ASN SEQRES 16 C 196 LEU SEQRES 1 D 196 SER THR LEU GLU VAL ARG SER GLN ALA THR GLN ASP LEU SEQRES 2 D 196 SER GLU TYR TYR ASN ARG PRO TYR PHE ASP LEU ARG ASN SEQRES 3 D 196 LEU SER GLY TYR ARG GLU GLY ASN THR VAL THR PHE ILE SEQRES 4 D 196 ASN HIS TYR GLN GLN THR ASP VAL LYS LEU GLU GLY LYS SEQRES 5 D 196 ASP LYS ASP LYS ILE LYS ASP GLY ASN ASN GLU ASN LEU SEQRES 6 D 196 ASP VAL PHE VAL VAL ARG GLU GLY SER GLY ARG GLN ALA SEQRES 7 D 196 ASP ASN ASN SER ILE GLY GLY ILE THR LYS THR ASN ARG SEQRES 8 D 196 THR GLN HIS ILE ASP THR VAL GLN ASN VAL ASN LEU LEU SEQRES 9 D 196 VAL SER LYS SER THR GLY GLN HIS THR THR SER VAL THR SEQRES 10 D 196 SER THR ASN TYR SER ILE TYR LYS GLU GLU ILE SER LEU SEQRES 11 D 196 LYS GLU LEU ASP PHE LYS LEU ARG LYS HIS LEU ILE ASP SEQRES 12 D 196 LYS HIS ASP LEU TYR LYS THR GLU PRO LYS ASP SER LYS SEQRES 13 D 196 ILE ARG VAL THR MET LYS ASN GLY ASP PHE TYR THR PHE SEQRES 14 D 196 GLU LEU ASN LYS LYS LEU GLN THR HIS ARG MET GLY ASP SEQRES 15 D 196 VAL ILE ASP GLY ARG ASN ILE GLU LYS ILE GLU VAL ASN SEQRES 16 D 196 LEU HET PO4 A 197 5 HET PO4 B 197 5 HET PO4 C 197 5 HET PO4 D 197 5 HET NA D 198 1 HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION FORMUL 5 PO4 4(O4 P 3-) FORMUL 9 NA NA 1+ FORMUL 10 HOH *737(H2 O) HELIX 1 1 SER A 7 ASN A 18 1 12 HELIX 2 2 LYS A 52 ILE A 57 1 6 HELIX 3 3 LEU A 130 HIS A 145 1 16 HELIX 4 4 GLN A 176 MET A 180 5 5 HELIX 5 5 SER B 7 ASN B 18 1 12 HELIX 6 6 LYS B 52 ILE B 57 1 6 HELIX 7 7 LEU B 130 ASP B 146 1 17 HELIX 8 8 GLN B 176 MET B 180 5 5 HELIX 9 9 SER C 7 ASN C 18 1 12 HELIX 10 10 LYS C 52 ILE C 57 1 6 HELIX 11 11 LEU C 130 ASP C 146 1 17 HELIX 12 12 GLN C 176 MET C 180 5 5 HELIX 13 13 SER D 7 ASN D 18 1 12 HELIX 14 14 LYS D 52 ILE D 57 1 6 HELIX 15 15 GLN D 77 ASN D 81 5 5 HELIX 16 16 LEU D 130 HIS D 145 1 16 HELIX 17 17 GLN D 176 MET D 180 5 5 SHEET 1 A 6 ASN A 80 ILE A 83 0 SHEET 2 A 6 GLN A 43 LYS A 48 1 N LYS A 48 O SER A 82 SHEET 3 A 6 THR A 35 ASN A 40 -1 N VAL A 36 O VAL A 47 SHEET 4 A 6 PHE A 22 GLU A 32 -1 N TYR A 30 O THR A 37 SHEET 5 A 6 GLY A 60 VAL A 69 -1 O VAL A 69 N PHE A 22 SHEET 6 A 6 ILE A 86 LYS A 88 -1 O THR A 87 N ASP A 66 SHEET 1 B 5 THR A 114 ILE A 123 0 SHEET 2 B 5 GLN A 99 SER A 108 -1 N VAL A 101 O TYR A 121 SHEET 3 B 5 ILE A 189 LEU A 196 1 O VAL A 194 N SER A 106 SHEET 4 B 5 LYS A 156 MET A 161 -1 N ARG A 158 O GLU A 193 SHEET 5 B 5 PHE A 166 GLU A 170 -1 O PHE A 169 N ILE A 157 SHEET 1 C 2 GLU A 127 SER A 129 0 SHEET 2 C 2 VAL A 183 ASP A 185 -1 O ILE A 184 N ILE A 128 SHEET 1 D 6 ASN B 80 ILE B 83 0 SHEET 2 D 6 GLN B 44 LYS B 48 1 N ASP B 46 O ASN B 80 SHEET 3 D 6 THR B 35 ILE B 39 -1 N PHE B 38 O THR B 45 SHEET 4 D 6 PHE B 22 GLU B 32 -1 N TYR B 30 O THR B 37 SHEET 5 D 6 GLY B 60 VAL B 69 -1 O VAL B 69 N PHE B 22 SHEET 6 D 6 ILE B 86 LYS B 88 -1 O THR B 87 N ASP B 66 SHEET 1 E 5 THR B 114 ILE B 123 0 SHEET 2 E 5 GLN B 99 SER B 108 -1 N LEU B 103 O THR B 119 SHEET 3 E 5 ILE B 189 LEU B 196 1 O VAL B 194 N LEU B 104 SHEET 4 E 5 LYS B 156 MET B 161 -1 N THR B 160 O GLU B 190 SHEET 5 E 5 PHE B 166 GLU B 170 -1 O PHE B 169 N ILE B 157 SHEET 1 F 2 GLU B 127 SER B 129 0 SHEET 2 F 2 VAL B 183 ASP B 185 -1 O ILE B 184 N ILE B 128 SHEET 1 G 6 ASN C 80 ILE C 83 0 SHEET 2 G 6 GLN C 44 LYS C 48 1 N ASP C 46 O ASN C 80 SHEET 3 G 6 THR C 35 ILE C 39 -1 N VAL C 36 O VAL C 47 SHEET 4 G 6 PHE C 22 GLU C 32 -1 N TYR C 30 O THR C 37 SHEET 5 G 6 GLY C 60 VAL C 69 -1 O GLY C 60 N ARG C 31 SHEET 6 G 6 ILE C 86 LYS C 88 -1 O THR C 87 N ASP C 66 SHEET 1 H 5 THR C 114 ILE C 123 0 SHEET 2 H 5 GLN C 99 SER C 108 -1 N LYS C 107 O SER C 115 SHEET 3 H 5 ILE C 189 LEU C 196 1 O LEU C 196 N SER C 106 SHEET 4 H 5 LYS C 156 MET C 161 -1 N ARG C 158 O GLU C 193 SHEET 5 H 5 PHE C 166 GLU C 170 -1 O TYR C 167 N VAL C 159 SHEET 1 I 2 GLU C 127 SER C 129 0 SHEET 2 I 2 VAL C 183 ASP C 185 -1 O ILE C 184 N ILE C 128 SHEET 1 J 6 SER D 82 ILE D 83 0 SHEET 2 J 6 GLN D 43 LYS D 48 1 N LYS D 48 O SER D 82 SHEET 3 J 6 THR D 35 ASN D 40 -1 N PHE D 38 O THR D 45 SHEET 4 J 6 PHE D 22 GLU D 32 -1 N TYR D 30 O THR D 37 SHEET 5 J 6 GLY D 60 VAL D 69 -1 O VAL D 69 N PHE D 22 SHEET 6 J 6 ILE D 86 LYS D 88 -1 O THR D 87 N ASP D 66 SHEET 1 K 5 THR D 114 ILE D 123 0 SHEET 2 K 5 GLN D 99 SER D 108 -1 N LEU D 103 O THR D 119 SHEET 3 K 5 ILE D 189 LEU D 196 1 O VAL D 194 N LEU D 104 SHEET 4 K 5 LYS D 156 MET D 161 -1 N ARG D 158 O GLU D 193 SHEET 5 K 5 PHE D 166 GLU D 170 -1 O TYR D 167 N VAL D 159 SHEET 1 L 2 GLU D 127 SER D 129 0 SHEET 2 L 2 VAL D 183 ASP D 185 -1 O ILE D 184 N ILE D 128 LINK OD1AASP D 23 NA NA D 198 1555 1555 2.80 LINK OD2AASP D 23 NA NA D 198 1555 1555 2.37 LINK OE2 GLU D 132 NA NA D 198 1555 1555 2.89 LINK NZ LYS D 136 NA NA D 198 1555 1555 2.27 LINK NA NA D 198 O HOH D 229 1555 1555 2.69 LINK NA NA D 198 O HOH D 369 1555 1555 2.75 CISPEP 1 GLY B 75 ARG B 76 0 15.31 CRYST1 54.391 98.152 79.515 90.00 91.47 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018385 0.000000 0.000471 0.00000 SCALE2 0.000000 0.010188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012580 0.00000