HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-SEP-07 2RDM TITLE CRYSTAL STRUCTURE OF RESPONSE REGULATOR RECEIVER PROTEIN FROM TITLE 2 SINORHIZOBIUM MEDICAE WSM419 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESPONSE REGULATOR RECEIVER PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MEDICAE; SOURCE 3 ORGANISM_TAXID: 366394; SOURCE 4 STRAIN: WSM419; SOURCE 5 GENE: SMED_4830; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,Q.YAN,C.ZHAN,R.TORO,A.J.MEYER,M.GILMORE,S.HU,C.GROSHONG, AUTHOR 2 L.RODGERS,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH AUTHOR 3 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 20-OCT-21 2RDM 1 SEQADV REVDAT 6 03-FEB-21 2RDM 1 AUTHOR JRNL REMARK SEQADV REVDAT 6 2 1 LINK REVDAT 5 14-NOV-18 2RDM 1 AUTHOR REVDAT 4 25-OCT-17 2RDM 1 REMARK REVDAT 3 13-JUL-11 2RDM 1 VERSN REVDAT 2 24-FEB-09 2RDM 1 VERSN REVDAT 1 09-OCT-07 2RDM 0 JRNL AUTH Y.PATSKOVSKY,Q.YAN,C.ZHAN,R.TORO,A.J.MEYER,M.GILMORE,S.HU, JRNL AUTH 2 C.GROSHONG,L.RODGERS,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF RESPONSE REGULATOR RECEIVER PROTEIN JRNL TITL 2 FROM SINORHIZOBIUM MEDICAE WSM419. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 35959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1159 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2592 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2755 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.68000 REMARK 3 B22 (A**2) : 3.44000 REMARK 3 B33 (A**2) : -1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.163 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2933 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4025 ; 1.269 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 5.295 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;38.363 ;25.439 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 491 ;13.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.184 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2176 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1390 ; 0.160 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2081 ; 0.299 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 360 ; 0.146 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 82 ; 0.130 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.144 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1936 ; 3.233 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3090 ; 4.805 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1099 ; 5.311 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 919 ; 7.651 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 123 4 REMARK 3 1 B 2 B 123 4 REMARK 3 1 C 2 C 123 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 838 ; 0.59 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 838 ; 0.52 ; 0.00 REMARK 3 MEDIUM POSITIONAL 1 C (A): 838 ; 0.65 ; 0.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 838 ; 5.69 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 838 ; 4.17 ; 0.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 838 ; 3.98 ; 0.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. OCCUPANCIES FOR SE ATOMS WERE SET TO 0.75. REMARK 4 REMARK 4 2RDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 10.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37460 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.03800 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CAPS PH 10.0, 200MM LITHIUM REMARK 280 SULFATE, 1.2M SODIUM DIHYDROGEN PHOSPHATE, 800MM POTASSIUM REMARK 280 PHOSPHATE, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.29650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.32850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.29650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.32850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9510 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 133 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 GLY A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 MSE B -1 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 GLY B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 MSE C -1 REMARK 465 SER C 0 REMARK 465 GLY C 124 REMARK 465 HIS C 125 REMARK 465 HIS C 126 REMARK 465 HIS C 127 REMARK 465 HIS C 128 REMARK 465 HIS C 129 REMARK 465 HIS C 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 86 -78.72 -116.35 REMARK 500 HIS B 86 -81.94 -104.38 REMARK 500 HIS C 86 -59.17 -125.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS C 86 ALA C 87 -94.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 131 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11010G RELATED DB: TARGETDB DBREF 2RDM A 2 122 UNP A6UIY7 A6UIY7_9RHIZ 2 122 DBREF 2RDM B 2 122 UNP A6UIY7 A6UIY7_9RHIZ 2 122 DBREF 2RDM C 2 122 UNP A6UIY7 A6UIY7_9RHIZ 2 122 SEQADV 2RDM MSE A -1 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM SER A 0 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM LEU A 1 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM MSE A 42 UNP A6UIY7 LEU 42 ENGINEERED MUTATION SEQADV 2RDM GLU A 123 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM GLY A 124 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS A 125 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS A 126 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS A 127 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS A 128 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS A 129 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS A 130 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM MSE B -1 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM SER B 0 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM LEU B 1 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM MSE B 42 UNP A6UIY7 LEU 42 ENGINEERED MUTATION SEQADV 2RDM GLU B 123 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM GLY B 124 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS B 125 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS B 126 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS B 127 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS B 128 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS B 129 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS B 130 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM MSE C -1 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM SER C 0 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM LEU C 1 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM MSE C 42 UNP A6UIY7 LEU 42 ENGINEERED MUTATION SEQADV 2RDM GLU C 123 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM GLY C 124 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS C 125 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS C 126 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS C 127 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS C 128 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS C 129 UNP A6UIY7 EXPRESSION TAG SEQADV 2RDM HIS C 130 UNP A6UIY7 EXPRESSION TAG SEQRES 1 A 132 MSE SER LEU GLU ALA VAL THR ILE LEU LEU ALA ASP ASP SEQRES 2 A 132 GLU ALA ILE LEU LEU LEU ASP PHE GLU SER THR LEU THR SEQRES 3 A 132 ASP ALA GLY PHE LEU VAL THR ALA VAL SER SER GLY ALA SEQRES 4 A 132 LYS ALA ILE GLU MSE LEU LYS SER GLY ALA ALA ILE ASP SEQRES 5 A 132 GLY VAL VAL THR ASP ILE ARG PHE CYS GLN PRO PRO ASP SEQRES 6 A 132 GLY TRP GLN VAL ALA ARG VAL ALA ARG GLU ILE ASP PRO SEQRES 7 A 132 ASN MSE PRO ILE VAL TYR ILE SER GLY HIS ALA ALA LEU SEQRES 8 A 132 GLU TRP ALA SER ASN GLY VAL PRO ASP SER ILE ILE LEU SEQRES 9 A 132 GLU LYS PRO PHE THR SER ALA GLN LEU ILE THR ALA VAL SEQRES 10 A 132 SER GLN LEU LEU ASN ALA ARG GLU GLY HIS HIS HIS HIS SEQRES 11 A 132 HIS HIS SEQRES 1 B 132 MSE SER LEU GLU ALA VAL THR ILE LEU LEU ALA ASP ASP SEQRES 2 B 132 GLU ALA ILE LEU LEU LEU ASP PHE GLU SER THR LEU THR SEQRES 3 B 132 ASP ALA GLY PHE LEU VAL THR ALA VAL SER SER GLY ALA SEQRES 4 B 132 LYS ALA ILE GLU MSE LEU LYS SER GLY ALA ALA ILE ASP SEQRES 5 B 132 GLY VAL VAL THR ASP ILE ARG PHE CYS GLN PRO PRO ASP SEQRES 6 B 132 GLY TRP GLN VAL ALA ARG VAL ALA ARG GLU ILE ASP PRO SEQRES 7 B 132 ASN MSE PRO ILE VAL TYR ILE SER GLY HIS ALA ALA LEU SEQRES 8 B 132 GLU TRP ALA SER ASN GLY VAL PRO ASP SER ILE ILE LEU SEQRES 9 B 132 GLU LYS PRO PHE THR SER ALA GLN LEU ILE THR ALA VAL SEQRES 10 B 132 SER GLN LEU LEU ASN ALA ARG GLU GLY HIS HIS HIS HIS SEQRES 11 B 132 HIS HIS SEQRES 1 C 132 MSE SER LEU GLU ALA VAL THR ILE LEU LEU ALA ASP ASP SEQRES 2 C 132 GLU ALA ILE LEU LEU LEU ASP PHE GLU SER THR LEU THR SEQRES 3 C 132 ASP ALA GLY PHE LEU VAL THR ALA VAL SER SER GLY ALA SEQRES 4 C 132 LYS ALA ILE GLU MSE LEU LYS SER GLY ALA ALA ILE ASP SEQRES 5 C 132 GLY VAL VAL THR ASP ILE ARG PHE CYS GLN PRO PRO ASP SEQRES 6 C 132 GLY TRP GLN VAL ALA ARG VAL ALA ARG GLU ILE ASP PRO SEQRES 7 C 132 ASN MSE PRO ILE VAL TYR ILE SER GLY HIS ALA ALA LEU SEQRES 8 C 132 GLU TRP ALA SER ASN GLY VAL PRO ASP SER ILE ILE LEU SEQRES 9 C 132 GLU LYS PRO PHE THR SER ALA GLN LEU ILE THR ALA VAL SEQRES 10 C 132 SER GLN LEU LEU ASN ALA ARG GLU GLY HIS HIS HIS HIS SEQRES 11 C 132 HIS HIS MODRES 2RDM MSE A 42 MET SELENOMETHIONINE MODRES 2RDM MSE A 78 MET SELENOMETHIONINE MODRES 2RDM MSE B 42 MET SELENOMETHIONINE MODRES 2RDM MSE B 78 MET SELENOMETHIONINE MODRES 2RDM MSE C 42 MET SELENOMETHIONINE MODRES 2RDM MSE C 78 MET SELENOMETHIONINE HET MSE A 42 8 HET MSE A 78 8 HET MSE B 42 8 HET MSE B 78 8 HET MSE C 42 13 HET MSE C 78 8 HET GOL A 131 6 HET GOL A 132 6 HET GOL C 131 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *198(H2 O) HELIX 1 1 GLU A 12 ALA A 26 1 15 HELIX 2 2 SER A 35 SER A 45 1 11 HELIX 3 3 ASP A 63 ASP A 75 1 13 HELIX 4 4 GLU A 90 GLY A 95 1 6 HELIX 5 5 THR A 107 ALA A 121 1 15 HELIX 6 6 GLU B 12 ALA B 26 1 15 HELIX 7 7 SER B 35 SER B 45 1 11 HELIX 8 8 ASP B 63 ASP B 75 1 13 HELIX 9 9 GLU B 90 GLY B 95 1 6 HELIX 10 10 THR B 107 ALA B 121 1 15 HELIX 11 11 GLU C 12 ALA C 26 1 15 HELIX 12 12 SER C 35 GLY C 46 1 12 HELIX 13 13 ASP C 63 ASP C 75 1 13 HELIX 14 14 ALA C 87 GLY C 95 1 9 HELIX 15 15 THR C 107 ALA C 121 1 15 SHEET 1 A 5 LEU A 29 VAL A 33 0 SHEET 2 A 5 THR A 5 ALA A 9 1 N LEU A 8 O VAL A 33 SHEET 3 A 5 GLY A 51 ASP A 55 1 O VAL A 53 N LEU A 7 SHEET 4 A 5 ILE A 80 SER A 84 1 O ILE A 83 N THR A 54 SHEET 5 A 5 ILE A 100 GLU A 103 1 O LEU A 102 N TYR A 82 SHEET 1 B 5 LEU B 29 VAL B 33 0 SHEET 2 B 5 THR B 5 ALA B 9 1 N LEU B 8 O VAL B 33 SHEET 3 B 5 GLY B 51 ASP B 55 1 O VAL B 53 N LEU B 7 SHEET 4 B 5 ILE B 80 SER B 84 1 O VAL B 81 N VAL B 52 SHEET 5 B 5 ILE B 100 GLU B 103 1 O LEU B 102 N TYR B 82 SHEET 1 C 5 LEU C 29 VAL C 33 0 SHEET 2 C 5 THR C 5 ALA C 9 1 N LEU C 8 O VAL C 33 SHEET 3 C 5 GLY C 51 ASP C 55 1 O VAL C 53 N LEU C 7 SHEET 4 C 5 ILE C 80 SER C 84 1 O ILE C 83 N THR C 54 SHEET 5 C 5 ILE C 100 GLU C 103 1 O LEU C 102 N TYR C 82 LINK C GLU A 41 N MSE A 42 1555 1555 1.31 LINK C MSE A 42 N LEU A 43 1555 1555 1.31 LINK C ASN A 77 N MSE A 78 1555 1555 1.34 LINK C MSE A 78 N PRO A 79 1555 1555 1.34 LINK C GLU B 41 N MSE B 42 1555 1555 1.33 LINK C MSE B 42 N LEU B 43 1555 1555 1.34 LINK C ASN B 77 N MSE B 78 1555 1555 1.34 LINK C MSE B 78 N PRO B 79 1555 1555 1.34 LINK C GLU C 41 N MSE C 42 1555 1555 1.32 LINK C MSE C 42 N LEU C 43 1555 1555 1.32 LINK C ASN C 77 N MSE C 78 1555 1555 1.33 LINK C MSE C 78 N PRO C 79 1555 1555 1.34 CISPEP 1 PRO A 61 PRO A 62 0 3.73 CISPEP 2 LYS A 104 PRO A 105 0 0.40 CISPEP 3 PRO B 61 PRO B 62 0 -1.56 CISPEP 4 LYS B 104 PRO B 105 0 -1.52 CISPEP 5 PRO C 61 PRO C 62 0 4.79 CISPEP 6 LYS C 104 PRO C 105 0 -1.20 SITE 1 AC1 7 ASP A 55 ILE A 56 ARG A 57 ILE A 83 SITE 2 AC1 7 GLY A 85 LYS A 104 HOH A 191 SITE 1 AC2 6 ARG A 72 PRO A 76 ASP A 98 HOH A 143 SITE 2 AC2 6 TRP B 91 ALA B 92 SITE 1 AC3 6 GLU A 123 PRO C 76 ASN C 77 ALA C 92 SITE 2 AC3 6 ASP C 98 HOH C 146 CRYST1 122.593 58.657 60.301 90.00 117.96 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008157 0.000000 0.004330 0.00000 SCALE2 0.000000 0.017048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018776 0.00000