HEADER OXIDOREDUCTASE 24-SEP-07 2RDN TITLE CRYSTAL STRUCTURE OF PTLH WITH AKG AND ENT-1PL BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXYPENTALENIC ACID 11-BETA HYDROXYLASE; FE(II)/ALPHA- COMPND 3 KETOGLUTARATE DEPENDENT HYDROXYLASE; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVERMITILIS; SOURCE 3 ORGANISM_TAXID: 33903; SOURCE 4 GENE: PTLH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28E KEYWDS DOUBLE STRANDED BARREL HELIX, DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.YOU,S.OMURA,H.IKEDA,D.E.CANE,G.JOGL REVDAT 6 21-FEB-24 2RDN 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 2RDN 1 REMARK REVDAT 4 13-JUL-11 2RDN 1 VERSN REVDAT 3 24-FEB-09 2RDN 1 VERSN REVDAT 2 25-DEC-07 2RDN 1 JRNL REVDAT 1 16-OCT-07 2RDN 0 JRNL AUTH Z.YOU,S.OMURA,H.IKEDA,D.E.CANE,G.JOGL JRNL TITL CRYSTAL STRUCTURE OF THE NON-HEME IRON DIOXYGENASE PTLH IN JRNL TITL 2 PENTALENOLACTONE BIOSYNTHESIS. JRNL REF J.BIOL.CHEM. V. 282 36552 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17942405 JRNL DOI 10.1074/JBC.M706358200 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 63775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3226 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4430 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 245 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2201 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 530 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.484 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2317 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3154 ; 1.173 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 5.828 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;32.803 ;23.130 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 366 ;11.570 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.461 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 333 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1822 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1252 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1597 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 522 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.166 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 46 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1419 ; 0.644 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2258 ; 1.042 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 993 ; 1.669 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 896 ; 2.399 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3223 31.1788 3.8516 REMARK 3 T TENSOR REMARK 3 T11: -0.0138 T22: -0.0112 REMARK 3 T33: -0.0089 T12: 0.0031 REMARK 3 T13: 0.0005 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.1655 L22: 0.3236 REMARK 3 L33: 0.2514 L12: -0.0672 REMARK 3 L13: 0.0148 L23: 0.0933 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: 0.0061 S13: -0.0208 REMARK 3 S21: 0.0147 S22: -0.0088 S23: 0.0082 REMARK 3 S31: -0.0171 S32: -0.0175 S33: 0.0025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RDN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044734. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63775 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.12, RESOLVE 2.12 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS, 200MM MGCL2, 20% PEG 3350, REMARK 280 PH 8.5, SITTING DROP, TEMPERATURE 282K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.05300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 277 REMARK 465 THR A 278 REMARK 465 GLY A 279 REMARK 465 THR A 280 REMARK 465 PRO A 281 REMARK 465 THR A 282 REMARK 465 ASP A 283 REMARK 465 VAL A 284 REMARK 465 GLU A 285 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 305 O HOH A 798 1.93 REMARK 500 O HOH A 315 O HOH A 716 1.99 REMARK 500 O HOH A 301 O HOH A 804 2.03 REMARK 500 O HOH A 532 O HOH A 539 2.04 REMARK 500 O HOH A 291 O HOH A 759 2.09 REMARK 500 O HOH A 427 O HOH A 537 2.11 REMARK 500 O HOH A 365 O HOH A 773 2.12 REMARK 500 O HOH A 784 O HOH A 793 2.16 REMARK 500 O HOH A 648 O HOH A 700 2.16 REMARK 500 O HOH A 360 O HOH A 777 2.18 REMARK 500 O HOH A 609 O HOH A 750 2.19 REMARK 500 O HOH A 295 O HOH A 747 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 521 O HOH A 763 2645 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 193 -163.98 -107.18 REMARK 500 LYS A 234 -37.79 -130.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 1 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 137 NE2 REMARK 620 2 ASP A 139 OD1 94.7 REMARK 620 3 HIS A 226 NE2 82.8 92.1 REMARK 620 4 AKG A 279 O2 164.0 100.0 90.4 REMARK 620 5 AKG A 279 O5 89.3 176.0 89.1 76.1 REMARK 620 6 HOH A 281 O 93.6 89.6 176.1 92.7 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 277 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 282 O REMARK 620 2 HOH A 283 O 85.1 REMARK 620 3 HOH A 284 O 175.8 90.8 REMARK 620 4 HOH A 285 O 86.8 171.9 97.3 REMARK 620 5 HOH A 407 O 89.0 93.4 90.6 86.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 278 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 286 O REMARK 620 2 HOH A 287 O 89.4 REMARK 620 3 HOH A 288 O 176.0 88.1 REMARK 620 4 HOH A 289 O 86.2 175.6 96.3 REMARK 620 5 HOH A 290 O 86.9 91.5 90.0 88.5 REMARK 620 6 HOH A 349 O 90.7 91.8 92.5 88.1 175.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PL A 280 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RDQ RELATED DB: PDB REMARK 900 RELATED ID: 2RDR RELATED DB: PDB REMARK 900 RELATED ID: 2RDS RELATED DB: PDB DBREF 2RDN A 1 285 UNP Q82IZ1 Q82IZ1_STRAW 1 285 SEQADV 2RDN GLY A -2 UNP P07602 EXPRESSION TAG SEQADV 2RDN SER A -1 UNP P07602 EXPRESSION TAG SEQADV 2RDN HIS A 0 UNP P07602 EXPRESSION TAG SEQRES 1 A 288 GLY SER HIS MET THR ASN VAL THR GLY ASP TYR THR ASP SEQRES 2 A 288 CYS THR PRO LEU LEU GLY ASP ARG ALA ALA LEU ASP SER SEQRES 3 A 288 PHE TYR GLU GLU HIS GLY TYR LEU PHE LEU ARG ASN VAL SEQRES 4 A 288 LEU ASP ARG ASP LEU VAL LYS THR VAL ALA GLU GLN MET SEQRES 5 A 288 ARG GLU GLY LEU VAL ALA LEU GLY ALA ALA ASP PRO HIS SEQRES 6 A 288 ALA THR LEU GLU GLU LEU THR ILE ASP SER PHE GLU SER SEQRES 7 A 288 VAL ASP GLU VAL ALA MET HIS ASP TYR VAL LYS TYR ASP SEQRES 8 A 288 ALA PHE TRP ASN ASN PRO SER THR ILE LYS VAL PHE GLU SEQRES 9 A 288 GLN VAL PHE GLY GLU PRO VAL PHE VAL PHE LEU SER THR SEQRES 10 A 288 THR ILE ARG TYR TYR PRO SER GLN ALA GLY SER GLU GLU SEQRES 11 A 288 PRO SER PHE HIS TYR LEU THR PRO PHE HIS GLN ASP GLY SEQRES 12 A 288 PHE TYR ILE GLY PRO ASN GLN ASP PHE ARG THR PHE TRP SEQRES 13 A 288 ILE PRO LEU ILE ARG THR THR ARG GLU SER GLY GLY VAL SEQRES 14 A 288 ALA LEU ALA ASP GLY SER HIS ARG ARG GLY LYS ARG ASP SEQRES 15 A 288 HIS VAL LEU ASN GLU SER PHE ARG ARG PHE GLY HIS PRO SEQRES 16 A 288 VAL ARG GLY ILE PRO PRO THR GLU VAL SER GLU ASP GLU SEQRES 17 A 288 HIS LEU LEU HIS SER PRO MET GLU PRO GLY ASP ILE LEU SEQRES 18 A 288 LEU PHE HIS ALA HIS MET CYS HIS LYS SER ILE PRO ASN SEQRES 19 A 288 LEU SER LYS ASP PRO ARG LEU MET ARG MET SER MET ASP SEQRES 20 A 288 THR ARG VAL GLN PRO ALA LYS SER HIS ARG GLY PHE ASN SEQRES 21 A 288 ALA MET THR PRO TRP THR GLU SER ALA LYS ASP ALA SER SEQRES 22 A 288 LYS GLY ILE MET ALA LYS ILE THR GLY THR PRO THR ASP SEQRES 23 A 288 VAL GLU HET FE A 1 1 HET MG A 277 1 HET MG A 278 1 HET AKG A 279 10 HET 1PL A 280 17 HETNAM FE FE (III) ION HETNAM MG MAGNESIUM ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM 1PL (1S,3AS,5AR,8AS)-1,7,7-TRIMETHYL-1,2,3,3A,5A,6,7,8- HETNAM 2 1PL OCTAHYDROCYCLOPENTA[C]PENTALENE-4-CARBOXYLIC ACID FORMUL 2 FE FE 3+ FORMUL 3 MG 2(MG 2+) FORMUL 5 AKG C5 H6 O5 FORMUL 6 1PL C15 H22 O2 FORMUL 7 HOH *530(H2 O) HELIX 1 1 CYS A 11 LEU A 15 5 5 HELIX 2 2 ASP A 17 GLY A 29 1 13 HELIX 3 3 ASP A 38 GLY A 57 1 20 HELIX 4 4 ASP A 77 VAL A 85 1 9 HELIX 5 5 LYS A 86 ASN A 92 1 7 HELIX 6 6 ASN A 93 GLY A 105 1 13 HELIX 7 7 GLN A 138 ILE A 143 1 6 HELIX 8 8 PRO A 197 VAL A 201 5 5 HELIX 9 9 GLY A 255 THR A 260 1 6 HELIX 10 10 PRO A 261 ILE A 273 1 13 HELIX 11 11 MET A 274 LYS A 276 5 3 SHEET 1 A 5 TYR A 30 LEU A 33 0 SHEET 2 A 5 ILE A 217 HIS A 221 -1 O ILE A 217 N LEU A 33 SHEET 3 A 5 ARG A 150 PRO A 155 -1 N TRP A 153 O LEU A 218 SHEET 4 A 5 ARG A 240 PRO A 249 -1 O MET A 243 N ILE A 154 SHEET 5 A 5 VAL A 108 TYR A 119 -1 N PHE A 109 O GLN A 248 SHEET 1 B 3 LEU A 207 LEU A 208 0 SHEET 2 B 3 GLY A 165 ALA A 169 -1 N LEU A 168 O LEU A 208 SHEET 3 B 3 HIS A 226 ILE A 229 -1 O LYS A 227 N ALA A 167 SHEET 1 C 2 VAL A 181 ARG A 188 0 SHEET 2 C 2 HIS A 191 GLY A 195 -1 O GLY A 195 N VAL A 181 LINK FE FE A 1 NE2 HIS A 137 1555 1555 2.20 LINK FE FE A 1 OD1 ASP A 139 1555 1555 2.06 LINK FE FE A 1 NE2 HIS A 226 1555 1555 2.23 LINK FE FE A 1 O2 AKG A 279 1555 1555 2.03 LINK FE FE A 1 O5 AKG A 279 1555 1555 2.25 LINK FE FE A 1 O HOH A 281 1555 1555 2.05 LINK MG MG A 277 O HOH A 282 1555 1555 2.25 LINK MG MG A 277 O HOH A 283 1555 1555 2.01 LINK MG MG A 277 O HOH A 284 1555 1555 2.08 LINK MG MG A 277 O HOH A 285 1555 1555 2.02 LINK MG MG A 277 O HOH A 407 1555 1555 2.03 LINK MG MG A 278 O HOH A 286 1555 1555 2.06 LINK MG MG A 278 O HOH A 287 1555 1555 2.08 LINK MG MG A 278 O HOH A 288 1555 1555 2.08 LINK MG MG A 278 O HOH A 289 1555 1555 2.10 LINK MG MG A 278 O HOH A 290 1555 1555 2.08 LINK MG MG A 278 O HOH A 349 1555 1555 2.12 CISPEP 1 GLY A 144 PRO A 145 0 5.84 CISPEP 2 ASP A 235 PRO A 236 0 -1.00 SITE 1 AC1 5 HIS A 137 ASP A 139 HIS A 226 AKG A 279 SITE 2 AC1 5 HOH A 281 SITE 1 AC2 6 HIS A 206 HOH A 282 HOH A 283 HOH A 284 SITE 2 AC2 6 HOH A 285 HOH A 407 SITE 1 AC3 6 HOH A 286 HOH A 287 HOH A 288 HOH A 289 SITE 2 AC3 6 HOH A 290 HOH A 349 SITE 1 AC4 12 FE A 1 ARG A 117 HIS A 137 ASP A 139 SITE 2 AC4 12 THR A 151 TRP A 153 HIS A 226 SER A 228 SITE 3 AC4 12 ARG A 240 ASP A 244 ARG A 246 HOH A 281 SITE 1 AC5 8 ARG A 117 THR A 134 HIS A 137 ARG A 188 SITE 2 AC5 8 ALA A 269 SER A 270 HOH A 281 HOH A 455 CRYST1 43.499 70.106 48.725 90.00 92.49 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022989 0.000000 0.001000 0.00000 SCALE2 0.000000 0.014264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020543 0.00000