HEADER OXIDOREDUCTASE 24-SEP-07 2RDQ TITLE CRYSTAL STRUCTURE OF PTLH WITH FE/ALPHA KETOGLUTARATE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXYPENTALENIC ACID 11-BETA HYDROXYLASE; FE(II)/ALPHA- COMPND 3 KETOGLUTARATE DEPENDENT HYDROXYLASE; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVERMITILIS; SOURCE 3 ORGANISM_TAXID: 33903; SOURCE 4 GENE: PTLH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28E KEYWDS DOUBLE STRANDED BARREL HELIX, DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.YOU,S.OMURA,H.IKEDA,D.E.CANE,G.JOGL REVDAT 6 21-FEB-24 2RDQ 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 2RDQ 1 REMARK REVDAT 4 13-JUL-11 2RDQ 1 VERSN REVDAT 3 24-FEB-09 2RDQ 1 VERSN REVDAT 2 25-DEC-07 2RDQ 1 JRNL REVDAT 1 16-OCT-07 2RDQ 0 JRNL AUTH Z.YOU,S.OMURA,H.IKEDA,D.E.CANE,G.JOGL JRNL TITL CRYSTAL STRUCTURE OF THE NON-HEME IRON DIOXYGENASE PTLH IN JRNL TITL 2 PENTALENOLACTONE BIOSYNTHESIS. JRNL REF J.BIOL.CHEM. V. 282 36552 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17942405 JRNL DOI 10.1074/JBC.M706358200 REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 64628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3259 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4683 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 257 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2130 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 629 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.473 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2236 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3044 ; 1.216 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 5.942 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;32.908 ;23.130 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 348 ;11.804 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.240 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 319 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1783 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1159 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1550 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 596 ; 0.241 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.250 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 64 ; 0.267 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1374 ; 0.599 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2193 ; 0.975 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 953 ; 1.530 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 851 ; 2.218 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2426 0.1677 3.2565 REMARK 3 T TENSOR REMARK 3 T11: -0.0106 T22: -0.0088 REMARK 3 T33: -0.0075 T12: 0.0020 REMARK 3 T13: -0.0019 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.1482 L22: 0.1745 REMARK 3 L33: 0.2730 L12: -0.0010 REMARK 3 L13: -0.0099 L23: 0.0630 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: -0.0020 S13: 0.0008 REMARK 3 S21: 0.0102 S22: -0.0059 S23: 0.0181 REMARK 3 S31: 0.0030 S32: 0.0028 S33: 0.0007 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64628 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.310 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.3 REMARK 200 DATA REDUNDANCY : 1.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO 1.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS, 200MM MGCL2, 20% PEG 3350, REMARK 280 PH 8.5, SITTING DROP, TEMPERATURE 282K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.43450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 267 REMARK 465 ASP A 268 REMARK 465 ALA A 269 REMARK 465 SER A 270 REMARK 465 LYS A 271 REMARK 465 GLY A 272 REMARK 465 ILE A 273 REMARK 465 MET A 274 REMARK 465 ALA A 275 REMARK 465 LYS A 276 REMARK 465 ILE A 277 REMARK 465 THR A 278 REMARK 465 GLY A 279 REMARK 465 THR A 280 REMARK 465 PRO A 281 REMARK 465 THR A 282 REMARK 465 ASP A 283 REMARK 465 VAL A 284 REMARK 465 GLU A 285 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 308 O HOH A 851 1.08 REMARK 500 O HOH A 353 O HOH A 876 1.40 REMARK 500 O HOH A 761 O HOH A 869 1.53 REMARK 500 O HOH A 309 O HOH A 869 1.57 REMARK 500 O HOH A 320 O HOH A 828 1.62 REMARK 500 O HOH A 274 O HOH A 858 1.64 REMARK 500 CG MET A 239 O HOH A 352 1.68 REMARK 500 O HOH A 734 O HOH A 864 1.73 REMARK 500 SD MET A 239 O HOH A 352 1.75 REMARK 500 O HOH A 328 O HOH A 854 1.77 REMARK 500 O HOH A 271 O HOH A 858 1.82 REMARK 500 O HOH A 282 O HOH A 801 1.84 REMARK 500 O HOH A 367 O HOH A 759 1.84 REMARK 500 O HOH A 746 O HOH A 830 1.92 REMARK 500 O HOH A 285 O HOH A 833 1.96 REMARK 500 O HOH A 729 O HOH A 824 1.99 REMARK 500 O HOH A 357 O HOH A 843 1.99 REMARK 500 O HOH A 312 O HOH A 804 2.00 REMARK 500 O HOH A 659 O HOH A 801 2.05 REMARK 500 O HOH A 295 O HOH A 862 2.05 REMARK 500 CE MET A 239 O HOH A 352 2.08 REMARK 500 O HOH A 330 O HOH A 852 2.12 REMARK 500 O HOH A 508 O HOH A 733 2.13 REMARK 500 O HOH A 337 O HOH A 870 2.13 REMARK 500 O HOH A 622 O HOH A 829 2.16 REMARK 500 N ALA A 89 O HOH A 761 2.19 REMARK 500 O HOH A 347 O HOH A 863 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 433 O HOH A 669 1556 1.72 REMARK 500 O HOH A 629 O HOH A 878 1554 1.88 REMARK 500 O HOH A 276 O HOH A 878 1554 1.96 REMARK 500 O HOH A 277 O HOH A 878 1554 2.12 REMARK 500 O HOH A 764 O HOH A 824 2645 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 234 -30.68 -138.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 1 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 137 NE2 REMARK 620 2 ASP A 139 OD1 95.9 REMARK 620 3 HIS A 226 NE2 84.7 90.4 REMARK 620 4 AKG A 269 O2 164.8 99.2 93.8 REMARK 620 5 AKG A 269 O5 90.6 173.5 90.4 74.3 REMARK 620 6 HOH A 270 O 92.7 91.6 176.9 88.3 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 267 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 271 O REMARK 620 2 HOH A 272 O 78.9 REMARK 620 3 HOH A 273 O 172.8 94.2 REMARK 620 4 HOH A 274 O 91.5 170.2 95.5 REMARK 620 5 HOH A 275 O 90.4 95.2 88.1 86.9 REMARK 620 6 HOH A 858 O 49.4 126.4 136.5 45.1 74.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 268 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 276 O REMARK 620 2 HOH A 277 O 91.5 REMARK 620 3 HOH A 278 O 177.4 87.0 REMARK 620 4 HOH A 279 O 84.8 175.5 96.8 REMARK 620 5 HOH A 280 O 87.0 91.4 90.8 91.0 REMARK 620 6 HOH A 281 O 90.3 88.2 91.8 89.2 177.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 269 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RDN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PTLH WITH IRON/ALPHA-KETOGLUTARATE AND ENT-1- REMARK 900 DEOXYPENTALENIC ACID BOUND REMARK 900 RELATED ID: 2RDR RELATED DB: PDB REMARK 900 RELATED ID: 2RDS RELATED DB: PDB DBREF 2RDQ A 1 285 UNP Q82IZ1 Q82IZ1_STRAW 1 285 SEQADV 2RDQ GLY A -2 UNP P07602 EXPRESSION TAG SEQADV 2RDQ SER A -1 UNP P07602 EXPRESSION TAG SEQADV 2RDQ HIS A 0 UNP P07602 EXPRESSION TAG SEQRES 1 A 288 GLY SER HIS MET THR ASN VAL THR GLY ASP TYR THR ASP SEQRES 2 A 288 CYS THR PRO LEU LEU GLY ASP ARG ALA ALA LEU ASP SER SEQRES 3 A 288 PHE TYR GLU GLU HIS GLY TYR LEU PHE LEU ARG ASN VAL SEQRES 4 A 288 LEU ASP ARG ASP LEU VAL LYS THR VAL ALA GLU GLN MET SEQRES 5 A 288 ARG GLU GLY LEU VAL ALA LEU GLY ALA ALA ASP PRO HIS SEQRES 6 A 288 ALA THR LEU GLU GLU LEU THR ILE ASP SER PHE GLU SER SEQRES 7 A 288 VAL ASP GLU VAL ALA MET HIS ASP TYR VAL LYS TYR ASP SEQRES 8 A 288 ALA PHE TRP ASN ASN PRO SER THR ILE LYS VAL PHE GLU SEQRES 9 A 288 GLN VAL PHE GLY GLU PRO VAL PHE VAL PHE LEU SER THR SEQRES 10 A 288 THR ILE ARG TYR TYR PRO SER GLN ALA GLY SER GLU GLU SEQRES 11 A 288 PRO SER PHE HIS TYR LEU THR PRO PHE HIS GLN ASP GLY SEQRES 12 A 288 PHE TYR ILE GLY PRO ASN GLN ASP PHE ARG THR PHE TRP SEQRES 13 A 288 ILE PRO LEU ILE ARG THR THR ARG GLU SER GLY GLY VAL SEQRES 14 A 288 ALA LEU ALA ASP GLY SER HIS ARG ARG GLY LYS ARG ASP SEQRES 15 A 288 HIS VAL LEU ASN GLU SER PHE ARG ARG PHE GLY HIS PRO SEQRES 16 A 288 VAL ARG GLY ILE PRO PRO THR GLU VAL SER GLU ASP GLU SEQRES 17 A 288 HIS LEU LEU HIS SER PRO MET GLU PRO GLY ASP ILE LEU SEQRES 18 A 288 LEU PHE HIS ALA HIS MET CYS HIS LYS SER ILE PRO ASN SEQRES 19 A 288 LEU SER LYS ASP PRO ARG LEU MET ARG MET SER MET ASP SEQRES 20 A 288 THR ARG VAL GLN PRO ALA LYS SER HIS ARG GLY PHE ASN SEQRES 21 A 288 ALA MET THR PRO TRP THR GLU SER ALA LYS ASP ALA SER SEQRES 22 A 288 LYS GLY ILE MET ALA LYS ILE THR GLY THR PRO THR ASP SEQRES 23 A 288 VAL GLU HET FE A 1 1 HET MG A 267 1 HET MG A 268 1 HET AKG A 269 10 HETNAM FE FE (III) ION HETNAM MG MAGNESIUM ION HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 2 FE FE 3+ FORMUL 3 MG 2(MG 2+) FORMUL 5 AKG C5 H6 O5 FORMUL 6 HOH *629(H2 O) HELIX 1 1 CYS A 11 LEU A 15 5 5 HELIX 2 2 ASP A 17 GLY A 29 1 13 HELIX 3 3 ASP A 38 GLY A 57 1 20 HELIX 4 4 ASP A 77 VAL A 85 1 9 HELIX 5 5 LYS A 86 ASN A 92 1 7 HELIX 6 6 ASN A 93 GLY A 105 1 13 HELIX 7 7 GLN A 138 ILE A 143 1 6 HELIX 8 8 PRO A 197 VAL A 201 5 5 HELIX 9 9 GLY A 255 THR A 260 1 6 HELIX 10 10 PRO A 261 ALA A 266 1 6 SHEET 1 A 5 TYR A 30 LEU A 33 0 SHEET 2 A 5 ILE A 217 HIS A 221 -1 O ILE A 217 N LEU A 33 SHEET 3 A 5 ARG A 150 PRO A 155 -1 N TRP A 153 O LEU A 218 SHEET 4 A 5 ARG A 240 PRO A 249 -1 O VAL A 247 N ARG A 150 SHEET 5 A 5 VAL A 108 TYR A 119 -1 N PHE A 109 O GLN A 248 SHEET 1 B 3 LEU A 207 LEU A 208 0 SHEET 2 B 3 GLY A 165 ALA A 169 -1 N LEU A 168 O LEU A 208 SHEET 3 B 3 HIS A 226 ILE A 229 -1 O LYS A 227 N ALA A 167 SHEET 1 C 2 VAL A 181 ARG A 188 0 SHEET 2 C 2 HIS A 191 GLY A 195 -1 O GLY A 195 N VAL A 181 LINK FE FE A 1 NE2 HIS A 137 1555 1555 2.18 LINK FE FE A 1 OD1 ASP A 139 1555 1555 2.06 LINK FE FE A 1 NE2 HIS A 226 1555 1555 2.19 LINK FE FE A 1 O2 AKG A 269 1555 1555 2.04 LINK FE FE A 1 O5 AKG A 269 1555 1555 2.25 LINK FE FE A 1 O HOH A 270 1555 1555 2.07 LINK MG MG A 267 O HOH A 271 1555 1555 2.17 LINK MG MG A 267 O HOH A 272 1555 1555 2.10 LINK MG MG A 267 O HOH A 273 1555 1555 2.15 LINK MG MG A 267 O HOH A 274 1555 1555 2.07 LINK MG MG A 267 O HOH A 275 1555 1555 1.99 LINK MG MG A 267 O HOH A 858 1555 1555 2.19 LINK MG MG A 268 O HOH A 276 1555 1555 2.09 LINK MG MG A 268 O HOH A 277 1555 1555 2.05 LINK MG MG A 268 O HOH A 278 1555 1555 2.05 LINK MG MG A 268 O HOH A 279 1555 1555 2.03 LINK MG MG A 268 O HOH A 280 1555 1555 2.04 LINK MG MG A 268 O HOH A 281 1555 1555 2.15 CISPEP 1 GLY A 144 PRO A 145 0 4.77 CISPEP 2 ASP A 235 PRO A 236 0 0.51 SITE 1 AC1 5 HIS A 137 ASP A 139 HIS A 226 AKG A 269 SITE 2 AC1 5 HOH A 270 SITE 1 AC2 7 HIS A 206 HOH A 271 HOH A 272 HOH A 273 SITE 2 AC2 7 HOH A 274 HOH A 275 HOH A 858 SITE 1 AC3 7 HOH A 276 HOH A 277 HOH A 278 HOH A 279 SITE 2 AC3 7 HOH A 280 HOH A 281 HOH A 878 SITE 1 AC4 13 FE A 1 ARG A 117 THR A 134 HIS A 137 SITE 2 AC4 13 ASP A 139 THR A 151 TRP A 153 HIS A 226 SITE 3 AC4 13 SER A 228 ARG A 240 ASP A 244 ARG A 246 SITE 4 AC4 13 HOH A 270 CRYST1 42.817 70.869 48.769 90.00 98.21 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023355 0.000000 0.003371 0.00000 SCALE2 0.000000 0.014111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020717 0.00000