HEADER OXIDOREDUCTASE 24-SEP-07 2RDS TITLE CRYSTAL STRUCTURE OF PTLH WITH FE/OXALYLGLYCINE AND ENT-1- TITLE 2 DEOXYPENTALENIC ACID BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXYPENTALENIC ACID 11-BETA HYDROXYLASE; FE(II)/ALPHA- COMPND 3 KETOGLUTARATE DEPENDENT HYDROXYLASE; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVERMITILIS; SOURCE 3 ORGANISM_TAXID: 33903; SOURCE 4 GENE: PTLH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28E KEYWDS DOUBLE STRANDED BARREL HELIX, DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.YOU,S.OMURA,H.IKEDA,D.E.CANE,G.JOGL REVDAT 6 21-FEB-24 2RDS 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 2RDS 1 REMARK REVDAT 4 13-JUL-11 2RDS 1 VERSN REVDAT 3 24-FEB-09 2RDS 1 VERSN REVDAT 2 25-DEC-07 2RDS 1 JRNL REVDAT 1 16-OCT-07 2RDS 0 JRNL AUTH Z.YOU,S.OMURA,H.IKEDA,D.E.CANE,G.JOGL JRNL TITL CRYSTAL STRUCTURE OF THE NON-HEME IRON DIOXYGENASE PTLH IN JRNL TITL 2 PENTALENOLACTONE BIOSYNTHESIS. JRNL REF J.BIOL.CHEM. V. 282 36552 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17942405 JRNL DOI 10.1074/JBC.M706358200 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 36176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1842 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2470 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2103 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 409 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.55000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.052 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2246 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3063 ; 1.181 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 270 ; 5.997 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;32.698 ;22.870 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 349 ;12.733 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.426 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 319 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1786 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1178 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1536 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 345 ; 0.232 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.023 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.126 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1364 ; 0.620 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2170 ; 1.036 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 984 ; 1.597 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 893 ; 2.531 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9350 13.2924 4.3371 REMARK 3 T TENSOR REMARK 3 T11: -0.0394 T22: -0.0358 REMARK 3 T33: -0.0292 T12: -0.0102 REMARK 3 T13: -0.0024 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.3951 L22: 0.3323 REMARK 3 L33: 0.5885 L12: 0.1597 REMARK 3 L13: -0.0929 L23: 0.0486 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: -0.0186 S13: -0.0062 REMARK 3 S21: 0.0062 S22: 0.0013 S23: -0.0182 REMARK 3 S31: -0.0306 S32: 0.0043 S33: -0.0097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RDS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : RIGAKU OSMIC CONFOCAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37311 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 39.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO 1.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 200MM MGCL2, 20% PEG REMARK 280 3350, PH 7.5, SITTING DROP, TEMPERATURE 282K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.97550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.69350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.97550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.69350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 486 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 639 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 VAL A 4 REMARK 465 ALA A 266 REMARK 465 LYS A 267 REMARK 465 ASP A 268 REMARK 465 ALA A 269 REMARK 465 SER A 270 REMARK 465 LYS A 271 REMARK 465 GLY A 272 REMARK 465 ILE A 273 REMARK 465 MET A 274 REMARK 465 ALA A 275 REMARK 465 LYS A 276 REMARK 465 ILE A 277 REMARK 465 THR A 278 REMARK 465 GLY A 279 REMARK 465 THR A 280 REMARK 465 PRO A 281 REMARK 465 THR A 282 REMARK 465 ASP A 283 REMARK 465 VAL A 284 REMARK 465 GLU A 285 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 301 O HOH A 604 0.93 REMARK 500 O HOH A 281 O HOH A 611 1.06 REMARK 500 O HOH A 297 O HOH A 590 1.41 REMARK 500 O HOH A 303 O HOH A 672 1.96 REMARK 500 O HOH A 401 O HOH A 589 1.96 REMARK 500 O HOH A 298 O HOH A 670 2.02 REMARK 500 O HOH A 294 O HOH A 673 2.03 REMARK 500 N THR A 5 O HOH A 547 2.03 REMARK 500 O HOH A 293 O HOH A 665 2.04 REMARK 500 O HOH A 389 O HOH A 577 2.06 REMARK 500 O HOH A 348 O HOH A 668 2.11 REMARK 500 O HOH A 349 O HOH A 658 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 189 37.61 71.10 REMARK 500 LYS A 234 -39.11 -131.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 1 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 137 NE2 REMARK 620 2 ASP A 139 OD1 94.1 REMARK 620 3 HIS A 226 NE2 83.5 92.1 REMARK 620 4 OGA A 268 O2 166.0 99.0 91.2 REMARK 620 5 OGA A 268 O2' 87.8 178.1 88.2 79.1 REMARK 620 6 HOH A 270 O 93.6 91.1 175.8 91.0 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 266 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 271 O REMARK 620 2 HOH A 272 O 85.2 REMARK 620 3 HOH A 273 O 173.5 88.4 REMARK 620 4 HOH A 274 O 89.9 174.8 96.5 REMARK 620 5 HOH A 275 O 91.1 91.2 87.6 87.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 267 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 276 O REMARK 620 2 HOH A 277 O 93.5 REMARK 620 3 HOH A 278 O 172.5 93.1 REMARK 620 4 HOH A 279 O 87.0 178.8 86.5 REMARK 620 5 HOH A 280 O 88.1 96.7 87.4 84.4 REMARK 620 6 HOH A 281 O 104.2 104.0 77.7 74.8 155.0 REMARK 620 7 HOH A 611 O 87.7 83.0 96.8 95.9 175.8 27.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OGA A 268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PL A 269 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RDN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PTLH WITH IRON/ALPHA KETOGLUTARATE AND ENT-1- REMARK 900 DEOXYPENTALENIC ACID BOUND REMARK 900 RELATED ID: 2RDQ RELATED DB: PDB REMARK 900 RYSTAL STRUCTURE OF PTLH WITH IRON/ALPHA KETOGLUTARATE BOUND REMARK 900 RELATED ID: 2RDR RELATED DB: PDB REMARK 900 RYSTAL STRUCTURE OF PTLH WITH IRON/OXALYLGLYCINE BOUND DBREF 2RDS A 1 285 UNP Q82IZ1 Q82IZ1_STRAW 1 285 SEQADV 2RDS GLY A -2 UNP P07602 EXPRESSION TAG SEQADV 2RDS SER A -1 UNP P07602 EXPRESSION TAG SEQADV 2RDS HIS A 0 UNP P07602 EXPRESSION TAG SEQRES 1 A 288 GLY SER HIS MET THR ASN VAL THR GLY ASP TYR THR ASP SEQRES 2 A 288 CYS THR PRO LEU LEU GLY ASP ARG ALA ALA LEU ASP SER SEQRES 3 A 288 PHE TYR GLU GLU HIS GLY TYR LEU PHE LEU ARG ASN VAL SEQRES 4 A 288 LEU ASP ARG ASP LEU VAL LYS THR VAL ALA GLU GLN MET SEQRES 5 A 288 ARG GLU GLY LEU VAL ALA LEU GLY ALA ALA ASP PRO HIS SEQRES 6 A 288 ALA THR LEU GLU GLU LEU THR ILE ASP SER PHE GLU SER SEQRES 7 A 288 VAL ASP GLU VAL ALA MET HIS ASP TYR VAL LYS TYR ASP SEQRES 8 A 288 ALA PHE TRP ASN ASN PRO SER THR ILE LYS VAL PHE GLU SEQRES 9 A 288 GLN VAL PHE GLY GLU PRO VAL PHE VAL PHE LEU SER THR SEQRES 10 A 288 THR ILE ARG TYR TYR PRO SER GLN ALA GLY SER GLU GLU SEQRES 11 A 288 PRO SER PHE HIS TYR LEU THR PRO PHE HIS GLN ASP GLY SEQRES 12 A 288 PHE TYR ILE GLY PRO ASN GLN ASP PHE ARG THR PHE TRP SEQRES 13 A 288 ILE PRO LEU ILE ARG THR THR ARG GLU SER GLY GLY VAL SEQRES 14 A 288 ALA LEU ALA ASP GLY SER HIS ARG ARG GLY LYS ARG ASP SEQRES 15 A 288 HIS VAL LEU ASN GLU SER PHE ARG ARG PHE GLY HIS PRO SEQRES 16 A 288 VAL ARG GLY ILE PRO PRO THR GLU VAL SER GLU ASP GLU SEQRES 17 A 288 HIS LEU LEU HIS SER PRO MET GLU PRO GLY ASP ILE LEU SEQRES 18 A 288 LEU PHE HIS ALA HIS MET CYS HIS LYS SER ILE PRO ASN SEQRES 19 A 288 LEU SER LYS ASP PRO ARG LEU MET ARG MET SER MET ASP SEQRES 20 A 288 THR ARG VAL GLN PRO ALA LYS SER HIS ARG GLY PHE ASN SEQRES 21 A 288 ALA MET THR PRO TRP THR GLU SER ALA LYS ASP ALA SER SEQRES 22 A 288 LYS GLY ILE MET ALA LYS ILE THR GLY THR PRO THR ASP SEQRES 23 A 288 VAL GLU HET FE A 1 1 HET MG A 266 1 HET MG A 267 1 HET OGA A 268 10 HET 1PL A 269 17 HETNAM FE FE (III) ION HETNAM MG MAGNESIUM ION HETNAM OGA N-OXALYLGLYCINE HETNAM 1PL (1S,3AS,5AR,8AS)-1,7,7-TRIMETHYL-1,2,3,3A,5A,6,7,8- HETNAM 2 1PL OCTAHYDROCYCLOPENTA[C]PENTALENE-4-CARBOXYLIC ACID FORMUL 2 FE FE 3+ FORMUL 3 MG 2(MG 2+) FORMUL 5 OGA C4 H5 N O5 FORMUL 6 1PL C15 H22 O2 FORMUL 7 HOH *409(H2 O) HELIX 1 1 CYS A 11 GLY A 16 5 6 HELIX 2 2 ASP A 17 GLY A 29 1 13 HELIX 3 3 ASP A 38 GLY A 57 1 20 HELIX 4 4 ASP A 77 VAL A 85 1 9 HELIX 5 5 LYS A 86 ASN A 92 1 7 HELIX 6 6 ASN A 93 GLY A 105 1 13 HELIX 7 7 GLN A 138 ILE A 143 1 6 HELIX 8 8 PRO A 197 VAL A 201 5 5 HELIX 9 9 GLY A 255 THR A 260 1 6 HELIX 10 10 PRO A 261 SER A 265 5 5 SHEET 1 A 5 TYR A 30 LEU A 33 0 SHEET 2 A 5 ILE A 217 HIS A 221 -1 O ILE A 217 N LEU A 33 SHEET 3 A 5 ARG A 150 PRO A 155 -1 N TRP A 153 O LEU A 218 SHEET 4 A 5 ARG A 240 PRO A 249 -1 O MET A 243 N ILE A 154 SHEET 5 A 5 VAL A 108 TYR A 119 -1 N ARG A 117 O SER A 242 SHEET 1 B 3 LEU A 207 LEU A 208 0 SHEET 2 B 3 GLY A 165 ALA A 169 -1 N LEU A 168 O LEU A 208 SHEET 3 B 3 HIS A 226 ILE A 229 -1 O LYS A 227 N ALA A 167 SHEET 1 C 2 VAL A 181 ARG A 188 0 SHEET 2 C 2 HIS A 191 GLY A 195 -1 O GLY A 195 N VAL A 181 LINK FE FE A 1 NE2 HIS A 137 1555 1555 2.22 LINK FE FE A 1 OD1 ASP A 139 1555 1555 2.10 LINK FE FE A 1 NE2 HIS A 226 1555 1555 2.23 LINK FE FE A 1 O2 OGA A 268 1555 1555 2.10 LINK FE FE A 1 O2' OGA A 268 1555 1555 2.20 LINK FE FE A 1 O HOH A 270 1555 1555 2.11 LINK MG MG A 266 O HOH A 271 1555 1555 2.28 LINK MG MG A 266 O HOH A 272 1555 1555 2.18 LINK MG MG A 266 O HOH A 273 1555 1555 1.97 LINK MG MG A 266 O HOH A 274 1555 1555 2.09 LINK MG MG A 266 O HOH A 275 1555 1555 2.11 LINK MG MG A 267 O HOH A 276 1555 1555 2.09 LINK MG MG A 267 O HOH A 277 1555 1555 1.97 LINK MG MG A 267 O HOH A 278 1555 1555 2.24 LINK MG MG A 267 O HOH A 279 1555 1555 2.13 LINK MG MG A 267 O HOH A 280 1555 1555 2.17 LINK MG MG A 267 O HOH A 281 1555 1555 2.25 LINK MG MG A 267 O HOH A 611 1555 1555 2.17 CISPEP 1 GLY A 144 PRO A 145 0 6.91 CISPEP 2 ASP A 235 PRO A 236 0 2.60 SITE 1 AC1 5 HIS A 137 ASP A 139 HIS A 226 OGA A 268 SITE 2 AC1 5 HOH A 270 SITE 1 AC2 6 HIS A 206 HOH A 271 HOH A 272 HOH A 273 SITE 2 AC2 6 HOH A 274 HOH A 275 SITE 1 AC3 7 HOH A 276 HOH A 277 HOH A 278 HOH A 279 SITE 2 AC3 7 HOH A 280 HOH A 281 HOH A 611 SITE 1 AC4 15 FE A 1 ARG A 117 THR A 134 HIS A 137 SITE 2 AC4 15 ASP A 139 THR A 151 TRP A 153 VAL A 166 SITE 3 AC4 15 PHE A 220 HIS A 226 SER A 228 ARG A 240 SITE 4 AC4 15 ASP A 244 ARG A 246 HOH A 270 SITE 1 AC5 8 ARG A 117 THR A 134 HIS A 137 TYR A 142 SITE 2 AC5 8 ARG A 188 ARG A 194 HOH A 270 HOH A 642 CRYST1 69.951 89.387 48.770 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014296 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020504 0.00000