HEADER OXIDOREDUCTASE 25-SEP-07 2RDT TITLE CRYSTAL STRUCTURE OF HUMAN GLYCOLATE OXIDASE (GO) IN COMPLEX WITH CDST COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYACID OXIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAOX1, GLYCOLATE OXIDASE, GOX; COMPND 5 EC: 1.1.3.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HAO1, GOX1, HAOX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS FLAVOPROTEIN, FMN, GLYCOLATE PATHWAY, OXIDOREDUCTASE, PEROXISOME EXPDTA X-RAY DIFFRACTION AUTHOR M.S.MURRAY,R.P.HOLMES,W.T.LOWTHER REVDAT 4 21-FEB-24 2RDT 1 REMARK REVDAT 3 13-JUL-11 2RDT 1 VERSN REVDAT 2 24-FEB-09 2RDT 1 VERSN REVDAT 1 26-FEB-08 2RDT 0 JRNL AUTH M.S.MURRAY,R.P.HOLMES,W.T.LOWTHER JRNL TITL ACTIVE SITE AND LOOP 4 MOVEMENTS WITHIN HUMAN GLYCOLATE JRNL TITL 2 OXIDASE: IMPLICATIONS FOR SUBSTRATE SPECIFICITY AND DRUG JRNL TITL 3 DESIGN. JRNL REF BIOCHEMISTRY V. 47 2439 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18215067 JRNL DOI 10.1021/BI701710R REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 25582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1295 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1763 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2602 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.729 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2702 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3656 ; 1.498 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 335 ; 5.911 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;31.916 ;23.423 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 479 ;16.275 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.228 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.270 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1987 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1418 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1864 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 197 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 92 ; 0.189 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.094 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1719 ; 0.730 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2670 ; 1.039 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1146 ; 1.993 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 985 ; 3.119 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6340 20.6190 3.4680 REMARK 3 T TENSOR REMARK 3 T11: 0.0771 T22: 0.0596 REMARK 3 T33: -0.0145 T12: 0.0218 REMARK 3 T13: -0.0095 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.7620 L22: 5.4527 REMARK 3 L33: 8.9183 L12: -0.5300 REMARK 3 L13: -0.0797 L23: -2.5207 REMARK 3 S TENSOR REMARK 3 S11: 0.1703 S12: 0.1920 S13: 0.2361 REMARK 3 S21: -0.0614 S22: -0.2013 S23: -0.1525 REMARK 3 S31: -0.5315 S32: -0.0867 S33: 0.0310 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9110 11.5790 16.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.0878 REMARK 3 T33: 0.0129 T12: -0.0177 REMARK 3 T13: -0.0159 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.5415 L22: 1.0312 REMARK 3 L33: 0.4560 L12: -0.4408 REMARK 3 L13: -0.2451 L23: 0.4675 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: -0.0177 S13: -0.0166 REMARK 3 S21: -0.0483 S22: -0.0246 S23: -0.0298 REMARK 3 S31: -0.0164 S32: -0.0113 S33: -0.0077 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2010 19.4220 18.2880 REMARK 3 T TENSOR REMARK 3 T11: 0.0280 T22: 0.0550 REMARK 3 T33: 0.0193 T12: -0.0162 REMARK 3 T13: 0.0133 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.6666 L22: 1.1535 REMARK 3 L33: 1.0845 L12: -0.0123 REMARK 3 L13: 0.4836 L23: -0.3248 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: 0.0675 S13: 0.1014 REMARK 3 S21: -0.0942 S22: -0.0354 S23: -0.2532 REMARK 3 S31: -0.0860 S32: 0.1948 S33: 0.0100 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9330 4.1530 24.6540 REMARK 3 T TENSOR REMARK 3 T11: 0.0508 T22: 0.0748 REMARK 3 T33: 0.0145 T12: 0.0078 REMARK 3 T13: -0.0145 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.9976 L22: 1.3199 REMARK 3 L33: 1.1497 L12: 0.3044 REMARK 3 L13: 0.4629 L23: 0.2887 REMARK 3 S TENSOR REMARK 3 S11: -0.0516 S12: 0.0378 S13: -0.0599 REMARK 3 S21: 0.0465 S22: 0.0792 S23: -0.1661 REMARK 3 S31: 0.0596 S32: 0.1644 S33: -0.0277 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 276 A 363 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9560 20.0030 23.0950 REMARK 3 T TENSOR REMARK 3 T11: 0.0679 T22: 0.0665 REMARK 3 T33: 0.0284 T12: -0.0152 REMARK 3 T13: -0.0029 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.7255 L22: 1.0919 REMARK 3 L33: 1.1451 L12: -0.4377 REMARK 3 L13: -0.0587 L23: 0.1368 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: -0.0631 S13: 0.0193 REMARK 3 S21: 0.0316 S22: 0.0219 S23: 0.0245 REMARK 3 S31: -0.0150 S32: -0.0300 S33: 0.0105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000044740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.2L REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25585 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 48.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES,PEG 600, CDST, PH 7.5, REMARK 280 TEMPERATURE 298K, PH 7.50, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.16100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.16100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.59700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.16100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.16100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.59700 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 48.16100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 48.16100 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 39.59700 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 48.16100 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 48.16100 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.59700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17850 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 LYS A 176 REMARK 465 LEU A 177 REMARK 465 PRO A 178 REMARK 465 PRO A 179 REMARK 465 GLN A 180 REMARK 465 LEU A 181 REMARK 465 ARG A 182 REMARK 465 MET A 183 REMARK 465 LYS A 184 REMARK 465 ASN A 185 REMARK 465 PHE A 186 REMARK 465 GLU A 187 REMARK 465 THR A 188 REMARK 465 SER A 189 REMARK 465 THR A 190 REMARK 465 LEU A 191 REMARK 465 SER A 192 REMARK 465 PHE A 193 REMARK 465 SER A 194 REMARK 465 PRO A 195 REMARK 465 GLU A 196 REMARK 465 GLU A 197 REMARK 465 ASN A 198 REMARK 465 PHE A 199 REMARK 465 GLY A 200 REMARK 465 ASP A 201 REMARK 465 ASP A 202 REMARK 465 SER A 203 REMARK 465 GLY A 204 REMARK 465 PRO A 364 REMARK 465 LEU A 365 REMARK 465 ALA A 366 REMARK 465 VAL A 367 REMARK 465 SER A 368 REMARK 465 LYS A 369 REMARK 465 ILE A 370 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 32 -118.60 50.22 REMARK 500 ASN A 56 97.07 76.76 REMARK 500 PRO A 74 42.73 -83.58 REMARK 500 TRP A 110 39.19 -95.49 REMARK 500 GLN A 264 -98.91 -100.70 REMARK 500 GLN A 324 38.78 -159.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2RD A 365 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GOX RELATED DB: PDB REMARK 900 SPINACH GLYCOLATE OXIDASE REMARK 900 RELATED ID: 2RDU RELATED DB: PDB REMARK 900 RELATED ID: 2RDW RELATED DB: PDB DBREF 2RDT A 1 370 UNP Q9UJM8 HAOX1_HUMAN 1 370 SEQADV 2RDT GLY A -16 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT SER A -15 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT HIS A -14 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT MET A -13 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT ALA A -12 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT SER A -11 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT MET A -10 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT THR A -9 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT GLY A -8 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT GLY A -7 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT GLN A -6 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT GLN A -5 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT MET A -4 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT GLY A -3 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT ARG A -2 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT GLY A -1 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDT SER A 0 UNP Q9UJM8 EXPRESSION TAG SEQRES 1 A 387 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 A 387 GLY ARG GLY SER MET LEU PRO ARG LEU ILE CYS ILE ASN SEQRES 3 A 387 ASP TYR GLU GLN HIS ALA LYS SER VAL LEU PRO LYS SER SEQRES 4 A 387 ILE TYR ASP TYR TYR ARG SER GLY ALA ASN ASP GLU GLU SEQRES 5 A 387 THR LEU ALA ASP ASN ILE ALA ALA PHE SER ARG TRP LYS SEQRES 6 A 387 LEU TYR PRO ARG MET LEU ARG ASN VAL ALA GLU THR ASP SEQRES 7 A 387 LEU SER THR SER VAL LEU GLY GLN ARG VAL SER MET PRO SEQRES 8 A 387 ILE CYS VAL GLY ALA THR ALA MET GLN ARG MET ALA HIS SEQRES 9 A 387 VAL ASP GLY GLU LEU ALA THR VAL ARG ALA CYS GLN SER SEQRES 10 A 387 LEU GLY THR GLY MET MET LEU SER SER TRP ALA THR SER SEQRES 11 A 387 SER ILE GLU GLU VAL ALA GLU ALA GLY PRO GLU ALA LEU SEQRES 12 A 387 ARG TRP LEU GLN LEU TYR ILE TYR LYS ASP ARG GLU VAL SEQRES 13 A 387 THR LYS LYS LEU VAL ARG GLN ALA GLU LYS MET GLY TYR SEQRES 14 A 387 LYS ALA ILE PHE VAL THR VAL ASP THR PRO TYR LEU GLY SEQRES 15 A 387 ASN ARG LEU ASP ASP VAL ARG ASN ARG PHE LYS LEU PRO SEQRES 16 A 387 PRO GLN LEU ARG MET LYS ASN PHE GLU THR SER THR LEU SEQRES 17 A 387 SER PHE SER PRO GLU GLU ASN PHE GLY ASP ASP SER GLY SEQRES 18 A 387 LEU ALA ALA TYR VAL ALA LYS ALA ILE ASP PRO SER ILE SEQRES 19 A 387 SER TRP GLU ASP ILE LYS TRP LEU ARG ARG LEU THR SER SEQRES 20 A 387 LEU PRO ILE VAL ALA LYS GLY ILE LEU ARG GLY ASP ASP SEQRES 21 A 387 ALA ARG GLU ALA VAL LYS HIS GLY LEU ASN GLY ILE LEU SEQRES 22 A 387 VAL SER ASN HIS GLY ALA ARG GLN LEU ASP GLY VAL PRO SEQRES 23 A 387 ALA THR ILE ASP VAL LEU PRO GLU ILE VAL GLU ALA VAL SEQRES 24 A 387 GLU GLY LYS VAL GLU VAL PHE LEU ASP GLY GLY VAL ARG SEQRES 25 A 387 LYS GLY THR ASP VAL LEU LYS ALA LEU ALA LEU GLY ALA SEQRES 26 A 387 LYS ALA VAL PHE VAL GLY ARG PRO ILE VAL TRP GLY LEU SEQRES 27 A 387 ALA PHE GLN GLY GLU LYS GLY VAL GLN ASP VAL LEU GLU SEQRES 28 A 387 ILE LEU LYS GLU GLU PHE ARG LEU ALA MET ALA LEU SER SEQRES 29 A 387 GLY CYS GLN ASN VAL LYS VAL ILE ASP LYS THR LEU VAL SEQRES 30 A 387 ARG LYS ASN PRO LEU ALA VAL SER LYS ILE HET FMN A 364 31 HET 2RD A 365 21 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM 2RD 5-(DODECYLTHIO)-1H-1,2,3-TRIAZOLE-4-CARBOXYLIC ACID HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN 2RD 4-CARBOXY-5-DODECYLSULFANYL-1,2,3-TRIAZOLE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 2RD C15 H27 N3 O2 S FORMUL 4 HOH *171(H2 O) HELIX 1 1 CYS A 7 LEU A 19 1 13 HELIX 2 2 PRO A 20 SER A 29 1 10 HELIX 3 3 GLU A 34 ARG A 46 1 13 HELIX 4 4 MET A 82 ALA A 86 5 5 HELIX 5 5 ASP A 89 GLY A 102 1 14 HELIX 6 6 SER A 114 GLY A 122 1 9 HELIX 7 7 ASP A 136 MET A 150 1 15 HELIX 8 8 ARG A 167 ASN A 173 1 7 HELIX 9 9 LEU A 205 ILE A 213 1 9 HELIX 10 10 SER A 218 THR A 229 1 12 HELIX 11 11 ARG A 240 HIS A 250 1 11 HELIX 12 12 ALA A 270 GLU A 283 1 14 HELIX 13 13 LYS A 296 LEU A 306 1 11 HELIX 14 14 GLY A 314 SER A 347 1 34 HELIX 15 15 ASN A 351 ILE A 355 5 5 HELIX 16 16 ASP A 356 THR A 358 5 3 SHEET 1 A 2 TRP A 47 LEU A 49 0 SHEET 2 A 2 VAL A 360 LYS A 362 -1 O ARG A 361 N LYS A 48 SHEET 1 B 2 THR A 64 VAL A 66 0 SHEET 2 B 2 GLN A 69 VAL A 71 -1 O GLN A 69 N VAL A 66 SHEET 1 C 9 ILE A 75 VAL A 77 0 SHEET 2 C 9 GLY A 104 LEU A 107 1 O MET A 106 N VAL A 77 SHEET 3 C 9 LEU A 126 LEU A 131 1 O GLN A 130 N LEU A 107 SHEET 4 C 9 ILE A 155 THR A 158 1 O PHE A 156 N LEU A 129 SHEET 5 C 9 ILE A 233 ILE A 238 1 O LYS A 236 N VAL A 157 SHEET 6 C 9 GLY A 254 VAL A 257 1 O LEU A 256 N ALA A 235 SHEET 7 C 9 GLU A 287 ASP A 291 1 O PHE A 289 N ILE A 255 SHEET 8 C 9 VAL A 311 VAL A 313 1 O PHE A 312 N LEU A 290 SHEET 9 C 9 ILE A 75 VAL A 77 1 N CYS A 76 O VAL A 311 CISPEP 1 LEU A 2 PRO A 3 0 -4.10 SITE 1 AC1 23 TYR A 26 TYR A 27 ALA A 79 THR A 80 SITE 2 AC1 23 ALA A 81 SER A 108 GLN A 130 TYR A 132 SITE 3 AC1 23 THR A 158 LYS A 236 SER A 258 HIS A 260 SITE 4 AC1 23 GLY A 261 ARG A 263 ASP A 291 GLY A 292 SITE 5 AC1 23 GLY A 293 ARG A 295 GLY A 314 ARG A 315 SITE 6 AC1 23 HOH A 374 HOH A 406 HOH A 447 SITE 1 AC2 7 TYR A 26 TRP A 110 ALA A 111 TYR A 132 SITE 2 AC2 7 ARG A 167 HIS A 260 ARG A 263 CRYST1 96.322 96.322 79.194 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012627 0.00000