HEADER OXIDOREDUCTASE 25-SEP-07 2RDW TITLE CRYSTAL STRUCTURE OF HUMAN GLYCOLATE OXIDASE IN COMPLEX WITH SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYACID OXIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAOX1, GLYCOLATE OXIDASE, GOX; COMPND 5 EC: 1.1.3.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HAO1, GOX1, HAOX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GOX, HAOX1, GLYCOLATE OXIDASE, HYDROXY ACID OXIDASE, FLAVOPROTEIN, KEYWDS 2 FMN, GLYCOLATE PATHWAY, OXIDOREDUCTASE, PEROXISOME EXPDTA X-RAY DIFFRACTION AUTHOR M.S.MURRAY,R.P.HOLMES,W.T.LOWTHER REVDAT 4 30-AUG-23 2RDW 1 REMARK REVDAT 3 13-JUL-11 2RDW 1 VERSN REVDAT 2 24-FEB-09 2RDW 1 VERSN REVDAT 1 26-FEB-08 2RDW 0 JRNL AUTH M.S.MURRAY,R.P.HOLMES,W.T.LOWTHER JRNL TITL ACTIVE SITE AND LOOP 4 MOVEMENTS WITHIN HUMAN GLYCOLATE JRNL TITL 2 OXIDASE: IMPLICATIONS FOR SUBSTRATE SPECIFICITY AND DRUG JRNL TITL 3 DESIGN. JRNL REF BIOCHEMISTRY V. 47 2439 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18215067 JRNL DOI 10.1021/BI701710R REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 38909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1971 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2484 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2794 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.731 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2922 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3966 ; 1.600 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 6.034 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;31.863 ;23.492 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 525 ;16.903 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.143 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2180 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1434 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2011 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 216 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 71 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1868 ; 0.755 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2899 ; 1.082 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1232 ; 1.964 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1061 ; 3.025 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): -1.5270 -20.1290 26.8660 REMARK 3 T TENSOR REMARK 3 T11: 0.1639 T22: 0.0848 REMARK 3 T33: -0.0412 T12: 0.0037 REMARK 3 T13: 0.0305 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 2.1705 L22: 0.3462 REMARK 3 L33: 0.6974 L12: -0.4013 REMARK 3 L13: 0.5672 L23: -0.2738 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: -0.3364 S13: -0.1052 REMARK 3 S21: 0.1435 S22: 0.0120 S23: 0.0743 REMARK 3 S31: 0.1636 S32: -0.0686 S33: -0.0158 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9330 -36.8850 23.6090 REMARK 3 T TENSOR REMARK 3 T11: 0.1972 T22: 0.0921 REMARK 3 T33: 0.1116 T12: 0.0420 REMARK 3 T13: -0.0252 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: 1.4690 L22: 0.6879 REMARK 3 L33: 0.8581 L12: 0.0231 REMARK 3 L13: 0.1546 L23: -0.0140 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: -0.1846 S13: -0.4397 REMARK 3 S21: 0.0811 S22: 0.0050 S23: -0.0848 REMARK 3 S31: 0.2154 S32: 0.0334 S33: -0.0406 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9380 -32.7980 35.8100 REMARK 3 T TENSOR REMARK 3 T11: 0.2279 T22: 0.2889 REMARK 3 T33: 0.1238 T12: 0.0648 REMARK 3 T13: -0.1006 T23: 0.1518 REMARK 3 L TENSOR REMARK 3 L11: 5.2512 L22: 5.6010 REMARK 3 L33: 3.3345 L12: -1.2239 REMARK 3 L13: 0.7757 L23: 0.7466 REMARK 3 S TENSOR REMARK 3 S11: 0.0548 S12: -0.6534 S13: -0.3444 REMARK 3 S21: 0.7433 S22: 0.0425 S23: -0.8103 REMARK 3 S31: 0.1859 S32: 0.1240 S33: -0.0973 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 205 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8650 -26.7920 13.4640 REMARK 3 T TENSOR REMARK 3 T11: 0.1363 T22: 0.0745 REMARK 3 T33: -0.0138 T12: 0.0312 REMARK 3 T13: 0.0086 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.6558 L22: 0.8232 REMARK 3 L33: 0.3596 L12: 0.0648 REMARK 3 L13: 0.1078 L23: 0.0922 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: 0.0763 S13: -0.1593 REMARK 3 S21: -0.0326 S22: 0.0359 S23: -0.0789 REMARK 3 S31: 0.1286 S32: 0.0893 S33: 0.0014 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 319 A 362 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7070 -27.8260 21.9740 REMARK 3 T TENSOR REMARK 3 T11: 0.1585 T22: 0.0812 REMARK 3 T33: 0.0669 T12: -0.0127 REMARK 3 T13: 0.0716 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 2.8699 L22: 2.0488 REMARK 3 L33: 3.1561 L12: -1.0496 REMARK 3 L13: 1.9566 L23: -1.3148 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: -0.1869 S13: -0.2945 REMARK 3 S21: 0.0074 S22: 0.0455 S23: 0.1384 REMARK 3 S31: 0.2494 S32: -0.1954 S33: -0.0717 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.2L REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38911 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 28.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 4.830 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.62 REMARK 200 R MERGE FOR SHELL (I) : 0.22500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1GOX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES,PEG 600, LI2SO4, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 71.82450 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 71.82450 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.23050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 71.82450 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 71.82450 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 55.23050 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 71.82450 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 71.82450 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 55.23050 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 71.82450 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 71.82450 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 55.23050 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 71.82450 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 71.82450 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 55.23050 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 71.82450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 71.82450 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 55.23050 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 71.82450 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 71.82450 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 55.23050 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 71.82450 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 71.82450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 55.23050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15680 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 PRO A 3 REMARK 465 ASN A 363 REMARK 465 PRO A 364 REMARK 465 LEU A 365 REMARK 465 ALA A 366 REMARK 465 VAL A 367 REMARK 465 SER A 368 REMARK 465 LYS A 369 REMARK 465 ILE A 370 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 157 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG A 240 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 32 -121.90 57.34 REMARK 500 ASN A 56 95.24 62.70 REMARK 500 THR A 60 117.65 -36.60 REMARK 500 PRO A 74 42.42 -81.65 REMARK 500 ASP A 201 42.35 -101.14 REMARK 500 GLN A 264 -100.78 -105.63 REMARK 500 GLN A 324 34.15 -153.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 372 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GOX RELATED DB: PDB REMARK 900 SPINACH HOMOLOGUE REMARK 900 RELATED ID: 2RDT RELATED DB: PDB REMARK 900 HUMAN GLYCOLATE OXIDASE IN COMPLEX WITH CDST REMARK 900 RELATED ID: 2RDU RELATED DB: PDB REMARK 900 HUMAN GLYCOLATE OXIDASE IN COMPLEX WITH GLYOXYLATE DBREF 2RDW A 1 370 UNP Q9UJM8 HAOX1_HUMAN 1 370 SEQADV 2RDW GLY A -16 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW SER A -15 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW HIS A -14 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW MET A -13 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW ALA A -12 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW SER A -11 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW MET A -10 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW THR A -9 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW GLY A -8 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW GLY A -7 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW GLN A -6 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW GLN A -5 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW MET A -4 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW GLY A -3 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW ARG A -2 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW GLY A -1 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDW SER A 0 UNP Q9UJM8 EXPRESSION TAG SEQRES 1 A 387 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 A 387 GLY ARG GLY SER MET LEU PRO ARG LEU ILE CYS ILE ASN SEQRES 3 A 387 ASP TYR GLU GLN HIS ALA LYS SER VAL LEU PRO LYS SER SEQRES 4 A 387 ILE TYR ASP TYR TYR ARG SER GLY ALA ASN ASP GLU GLU SEQRES 5 A 387 THR LEU ALA ASP ASN ILE ALA ALA PHE SER ARG TRP LYS SEQRES 6 A 387 LEU TYR PRO ARG MET LEU ARG ASN VAL ALA GLU THR ASP SEQRES 7 A 387 LEU SER THR SER VAL LEU GLY GLN ARG VAL SER MET PRO SEQRES 8 A 387 ILE CYS VAL GLY ALA THR ALA MET GLN ARG MET ALA HIS SEQRES 9 A 387 VAL ASP GLY GLU LEU ALA THR VAL ARG ALA CYS GLN SER SEQRES 10 A 387 LEU GLY THR GLY MET MET LEU SER SER TRP ALA THR SER SEQRES 11 A 387 SER ILE GLU GLU VAL ALA GLU ALA GLY PRO GLU ALA LEU SEQRES 12 A 387 ARG TRP LEU GLN LEU TYR ILE TYR LYS ASP ARG GLU VAL SEQRES 13 A 387 THR LYS LYS LEU VAL ARG GLN ALA GLU LYS MET GLY TYR SEQRES 14 A 387 LYS ALA ILE PHE VAL THR VAL ASP THR PRO TYR LEU GLY SEQRES 15 A 387 ASN ARG LEU ASP ASP VAL ARG ASN ARG PHE LYS LEU PRO SEQRES 16 A 387 PRO GLN LEU ARG MET LYS ASN PHE GLU THR SER THR LEU SEQRES 17 A 387 SER PHE SER PRO GLU GLU ASN PHE GLY ASP ASP SER GLY SEQRES 18 A 387 LEU ALA ALA TYR VAL ALA LYS ALA ILE ASP PRO SER ILE SEQRES 19 A 387 SER TRP GLU ASP ILE LYS TRP LEU ARG ARG LEU THR SER SEQRES 20 A 387 LEU PRO ILE VAL ALA LYS GLY ILE LEU ARG GLY ASP ASP SEQRES 21 A 387 ALA ARG GLU ALA VAL LYS HIS GLY LEU ASN GLY ILE LEU SEQRES 22 A 387 VAL SER ASN HIS GLY ALA ARG GLN LEU ASP GLY VAL PRO SEQRES 23 A 387 ALA THR ILE ASP VAL LEU PRO GLU ILE VAL GLU ALA VAL SEQRES 24 A 387 GLU GLY LYS VAL GLU VAL PHE LEU ASP GLY GLY VAL ARG SEQRES 25 A 387 LYS GLY THR ASP VAL LEU LYS ALA LEU ALA LEU GLY ALA SEQRES 26 A 387 LYS ALA VAL PHE VAL GLY ARG PRO ILE VAL TRP GLY LEU SEQRES 27 A 387 ALA PHE GLN GLY GLU LYS GLY VAL GLN ASP VAL LEU GLU SEQRES 28 A 387 ILE LEU LYS GLU GLU PHE ARG LEU ALA MET ALA LEU SER SEQRES 29 A 387 GLY CYS GLN ASN VAL LYS VAL ILE ASP LYS THR LEU VAL SEQRES 30 A 387 ARG LYS ASN PRO LEU ALA VAL SER LYS ILE HET SO4 A 371 5 HET FMN A 372 31 HETNAM SO4 SULFATE ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 SO4 O4 S 2- FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 HOH *220(H2 O) HELIX 1 1 CYS A 7 LEU A 19 1 13 HELIX 2 2 PRO A 20 SER A 29 1 10 HELIX 3 3 GLU A 34 TRP A 47 1 14 HELIX 4 4 MET A 82 ALA A 86 5 5 HELIX 5 5 ASP A 89 GLY A 102 1 14 HELIX 6 6 SER A 114 GLY A 122 1 9 HELIX 7 7 ASP A 136 MET A 150 1 15 HELIX 8 8 ARG A 167 ASN A 173 1 7 HELIX 9 9 SER A 203 ILE A 213 1 11 HELIX 10 10 SER A 218 THR A 229 1 12 HELIX 11 11 ARG A 240 HIS A 250 1 11 HELIX 12 12 ALA A 270 GLU A 283 1 14 HELIX 13 13 LYS A 296 LEU A 306 1 11 HELIX 14 14 GLY A 314 SER A 347 1 34 HELIX 15 15 ASN A 351 ILE A 355 5 5 HELIX 16 16 ASP A 356 THR A 358 5 3 SHEET 1 A 2 LYS A 48 LEU A 49 0 SHEET 2 A 2 VAL A 360 ARG A 361 -1 O ARG A 361 N LYS A 48 SHEET 1 B 2 THR A 64 VAL A 66 0 SHEET 2 B 2 GLN A 69 VAL A 71 -1 O GLN A 69 N VAL A 66 SHEET 1 C 9 ILE A 75 VAL A 77 0 SHEET 2 C 9 MET A 105 LEU A 107 1 O MET A 106 N VAL A 77 SHEET 3 C 9 ARG A 127 LEU A 131 1 O GLN A 130 N LEU A 107 SHEET 4 C 9 ILE A 155 THR A 158 1 O PHE A 156 N LEU A 129 SHEET 5 C 9 ILE A 233 ILE A 238 1 O LYS A 236 N VAL A 157 SHEET 6 C 9 GLY A 254 VAL A 257 1 O LEU A 256 N ALA A 235 SHEET 7 C 9 GLU A 287 ASP A 291 1 O PHE A 289 N ILE A 255 SHEET 8 C 9 ALA A 310 VAL A 313 1 O PHE A 312 N LEU A 290 SHEET 9 C 9 ILE A 75 VAL A 77 1 N CYS A 76 O VAL A 311 SITE 1 AC1 7 TYR A 26 TRP A 110 LEU A 164 ARG A 167 SITE 2 AC1 7 LEU A 205 HIS A 260 ARG A 263 SITE 1 AC2 23 TYR A 26 TYR A 27 ALA A 79 ALA A 81 SITE 2 AC2 23 SER A 108 TRP A 110 GLN A 130 TYR A 132 SITE 3 AC2 23 THR A 158 LYS A 236 SER A 258 HIS A 260 SITE 4 AC2 23 GLY A 261 ARG A 263 ASP A 291 GLY A 292 SITE 5 AC2 23 GLY A 293 ARG A 295 GLY A 314 ARG A 315 SITE 6 AC2 23 HOH A 418 HOH A 434 HOH A 436 CRYST1 143.649 143.649 110.461 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006961 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009053 0.00000