HEADER OXIDOREDUCTASE 25-SEP-07 2RE2 TITLE CRYSTAL STRUCTURE OF A PUTATIVE IRON-MOLYBDENUM COFACTOR (FEMO-CO) TITLE 2 DINITROGENASE (TA1041M) FROM THERMOPLASMA ACIDOPHILUM DSM 1728 AT TITLE 3 1.30 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN TA1041; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM DSM 1728; SOURCE 3 ORGANISM_TAXID: 273075; SOURCE 4 STRAIN: DSM 1728, IFO 15155, JCM 9062, AMRC-C165; SOURCE 5 ATCC: 25905; SOURCE 6 GENE: NP_394501.1, TA1041; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS DINITROGENASE IRON-MOLYBDENUM COFACTOR, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 30-OCT-24 2RE2 1 REMARK REVDAT 7 25-JAN-23 2RE2 1 SEQADV REVDAT 6 24-JUL-19 2RE2 1 REMARK LINK REVDAT 5 25-OCT-17 2RE2 1 REMARK REVDAT 4 13-JUL-11 2RE2 1 VERSN REVDAT 3 28-JUL-10 2RE2 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2RE2 1 VERSN REVDAT 1 09-OCT-07 2RE2 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION JRNL TITL 2 (NP_394501.1) FROM THERMOPLASMA ACIDOPHILUM AT 1.30 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 56000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2809 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3796 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1758 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 336 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : -0.19000 REMARK 3 B23 (A**2) : 0.45000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.533 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1953 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1288 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2676 ; 1.777 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3206 ; 0.991 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 276 ; 6.325 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;31.575 ;25.867 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 329 ;11.647 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 5.206 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2286 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 362 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 380 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1386 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 997 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1029 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 255 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 27 ; 0.145 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.169 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1309 ; 1.307 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 519 ; 0.328 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2079 ; 1.737 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 706 ; 3.417 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 592 ; 4.582 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2498 35.8126 1.6859 REMARK 3 T TENSOR REMARK 3 T11: -0.0584 T22: -0.0220 REMARK 3 T33: -0.0538 T12: 0.0032 REMARK 3 T13: 0.0031 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.4607 L22: 0.3546 REMARK 3 L33: 1.0376 L12: -0.1768 REMARK 3 L13: 0.4136 L23: -0.3352 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.1434 S13: -0.0254 REMARK 3 S21: -0.0306 S22: -0.0155 S23: 0.0180 REMARK 3 S31: 0.0503 S32: 0.0016 S33: 0.0143 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -5 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5267 28.5674 25.4184 REMARK 3 T TENSOR REMARK 3 T11: -0.0443 T22: -0.0629 REMARK 3 T33: -0.0539 T12: -0.0062 REMARK 3 T13: -0.0021 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.5580 L22: 1.1920 REMARK 3 L33: 1.0984 L12: -0.1966 REMARK 3 L13: 0.0613 L23: -0.4537 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.0413 S13: -0.0206 REMARK 3 S21: 0.0907 S22: -0.0058 S23: 0.0309 REMARK 3 S31: -0.0149 S32: -0.0248 S33: 0.0066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2RE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044748. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56000 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.676 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : 0.40300 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 19.0% 2-PROPANOL, 19.0% PEG REMARK 280 4000, 5.0% GLYCEROL, 0.1M CITRIC ACID PH 5.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION REMARK 300 ON BURIED SURFACE AREA. REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF A MONOMER AS REMARK 300 A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 HIS A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ASP B -15 REMARK 465 LYS B -14 REMARK 465 ILE B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 GLU B -6 REMARK 465 HIS B 115 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A -3 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A -1 CD OE1 NE2 REMARK 470 ARG A 32 CZ NH1 NH2 REMARK 470 ASN B -5 CG OD1 ND2 REMARK 470 GLN B -1 CG CD OE1 NE2 REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 19 O HOH A 157 2.08 REMARK 500 CD1 ILE B 77 CE MSE B 81 2.14 REMARK 500 OD1 ASP B 10 O HOH B 219 2.15 REMARK 500 OD1 ASP B 82 O HOH B 279 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 MSE A 81 CB - CG - SE ANGL. DEV. = -19.8 DEGREES REMARK 500 ARG B 11 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 11 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 376464 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 2RE2 A 1 117 UNP Q9HJC9 Q9HJC9_THEAC 6 122 DBREF 2RE2 B 1 117 UNP Q9HJC9 Q9HJC9_THEAC 6 122 SEQADV 2RE2 MSE A -18 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 GLY A -17 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 SER A -16 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 ASP A -15 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 LYS A -14 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 ILE A -13 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 HIS A -12 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 HIS A -11 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 HIS A -10 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 HIS A -9 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 HIS A -8 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 HIS A -7 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 GLU A -6 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 ASN A -5 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 LEU A -4 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 TYR A -3 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 PHE A -2 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 GLN A -1 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 GLY A 0 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 MSE B -18 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 GLY B -17 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 SER B -16 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 ASP B -15 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 LYS B -14 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 ILE B -13 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 HIS B -12 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 HIS B -11 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 HIS B -10 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 HIS B -9 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 HIS B -8 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 HIS B -7 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 GLU B -6 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 ASN B -5 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 LEU B -4 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 TYR B -3 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 PHE B -2 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 GLN B -1 UNP Q9HJC9 EXPRESSION TAG SEQADV 2RE2 GLY B 0 UNP Q9HJC9 EXPRESSION TAG SEQRES 1 A 136 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 136 ASN LEU TYR PHE GLN GLY MSE LYS PHE ALA VAL ALA VAL SEQRES 3 A 136 SER GLY ASP ARG VAL ASN GLY PRO GLY GLU SER GLU GLU SEQRES 4 A 136 VAL GLN ILE TYR GLU THR ASP GLY GLY ASN VAL ARG LEU SEQRES 5 A 136 ILE GLU LYS TYR SER ASN PRO ALA LEU ASN ALA THR ALA SEQRES 6 A 136 ALA ARG GLY VAL PHE MSE LEU LYS SER ALA LEU ASP HIS SEQRES 7 A 136 GLY ALA ASN ALA LEU VAL LEU SER GLU ILE GLY SER PRO SEQRES 8 A 136 GLY PHE ASN PHE ILE LYS ASN LYS MSE ASP VAL TYR ILE SEQRES 9 A 136 VAL PRO GLU MSE PRO VAL ALA ASP ALA LEU LYS LEU ILE SEQRES 10 A 136 LEU GLU GLY LYS VAL SER PRO ALA THR ALA PRO THR HIS SEQRES 11 A 136 ASP HIS GLY HIS HIS HIS SEQRES 1 B 136 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 136 ASN LEU TYR PHE GLN GLY MSE LYS PHE ALA VAL ALA VAL SEQRES 3 B 136 SER GLY ASP ARG VAL ASN GLY PRO GLY GLU SER GLU GLU SEQRES 4 B 136 VAL GLN ILE TYR GLU THR ASP GLY GLY ASN VAL ARG LEU SEQRES 5 B 136 ILE GLU LYS TYR SER ASN PRO ALA LEU ASN ALA THR ALA SEQRES 6 B 136 ALA ARG GLY VAL PHE MSE LEU LYS SER ALA LEU ASP HIS SEQRES 7 B 136 GLY ALA ASN ALA LEU VAL LEU SER GLU ILE GLY SER PRO SEQRES 8 B 136 GLY PHE ASN PHE ILE LYS ASN LYS MSE ASP VAL TYR ILE SEQRES 9 B 136 VAL PRO GLU MSE PRO VAL ALA ASP ALA LEU LYS LEU ILE SEQRES 10 B 136 LEU GLU GLY LYS VAL SER PRO ALA THR ALA PRO THR HIS SEQRES 11 B 136 ASP HIS GLY HIS HIS HIS MODRES 2RE2 MSE A 1 MET SELENOMETHIONINE MODRES 2RE2 MSE A 52 MET SELENOMETHIONINE MODRES 2RE2 MSE A 81 MET SELENOMETHIONINE MODRES 2RE2 MSE A 89 MET SELENOMETHIONINE MODRES 2RE2 MSE B 1 MET SELENOMETHIONINE MODRES 2RE2 MSE B 52 MET SELENOMETHIONINE MODRES 2RE2 MSE B 81 MET SELENOMETHIONINE MODRES 2RE2 MSE B 89 MET SELENOMETHIONINE HET MSE A 1 13 HET MSE A 52 8 HET MSE A 81 8 HET MSE A 89 8 HET MSE B 1 8 HET MSE B 52 8 HET MSE B 81 8 HET MSE B 89 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HOH *336(H2 O) HELIX 1 1 PRO A 40 ALA A 44 5 5 HELIX 2 2 ALA A 47 HIS A 59 1 13 HELIX 3 3 GLY A 70 LYS A 78 1 9 HELIX 4 4 PRO A 90 GLU A 100 1 11 HELIX 5 5 PRO B 40 ALA B 44 5 5 HELIX 6 6 ALA B 47 HIS B 59 1 13 HELIX 7 7 GLY B 70 LYS B 78 1 9 HELIX 8 8 PRO B 90 GLU B 100 1 11 SHEET 1 A 4 ARG A 11 VAL A 12 0 SHEET 2 A 4 LYS A 2 SER A 8 -1 N SER A 8 O ARG A 11 SHEET 3 A 4 GLU A 20 THR A 26 -1 O TYR A 24 N PHE A 3 SHEET 4 A 4 VAL A 31 SER A 38 -1 O GLU A 35 N ILE A 23 SHEET 1 B 4 ARG A 11 VAL A 12 0 SHEET 2 B 4 LYS A 2 SER A 8 -1 N SER A 8 O ARG A 11 SHEET 3 B 4 ALA A 63 LEU A 66 1 O ALA A 63 N ALA A 4 SHEET 4 B 4 ASP A 82 ILE A 85 1 O TYR A 84 N LEU A 64 SHEET 1 C 4 ARG B 11 VAL B 12 0 SHEET 2 C 4 MSE B 1 SER B 8 -1 N SER B 8 O ARG B 11 SHEET 3 C 4 GLU B 20 THR B 26 -1 O GLU B 20 N VAL B 7 SHEET 4 C 4 VAL B 31 SER B 38 -1 O GLU B 35 N ILE B 23 SHEET 1 D 4 ARG B 11 VAL B 12 0 SHEET 2 D 4 MSE B 1 SER B 8 -1 N SER B 8 O ARG B 11 SHEET 3 D 4 ALA B 63 LEU B 66 1 O ALA B 63 N ALA B 4 SHEET 4 D 4 ASP B 82 ILE B 85 1 O TYR B 84 N LEU B 64 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C PHE A 51 N MSE A 52 1555 1555 1.34 LINK C MSE A 52 N LEU A 53 1555 1555 1.32 LINK C LYS A 80 N MSE A 81 1555 1555 1.33 LINK C MSE A 81 N ASP A 82 1555 1555 1.31 LINK C GLU A 88 N MSE A 89 1555 1555 1.30 LINK C MSE A 89 N PRO A 90 1555 1555 1.35 LINK C GLY B 0 N MSE B 1 1555 1555 1.31 LINK C MSE B 1 N LYS B 2 1555 1555 1.34 LINK C PHE B 51 N MSE B 52 1555 1555 1.32 LINK C MSE B 52 N LEU B 53 1555 1555 1.34 LINK C BLYS B 80 N MSE B 81 1555 1555 1.34 LINK C ALYS B 80 N MSE B 81 1555 1555 1.33 LINK C MSE B 81 N ASP B 82 1555 1555 1.33 LINK C GLU B 88 N MSE B 89 1555 1555 1.31 LINK C MSE B 89 N PRO B 90 1555 1555 1.36 CRYST1 36.381 36.555 51.641 72.03 71.81 87.25 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027487 -0.001320 -0.009070 0.00000 SCALE2 0.000000 0.027388 -0.008909 0.00000 SCALE3 0.000000 0.000000 0.021435 0.00000