HEADER OXIDOREDUCTASE 26-SEP-07 2REM TITLE CRYSTAL STRUCTURE OF OXIDOREDUCTASE DSBA FROM XYLELLA FASTIDIOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISULFIDE OXIDOREDUCTASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 1.8.4.2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 8 RESIDUE PEPTIDE; COMPND 8 CHAIN: T; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XYLELLA FASTIDIOSA; SOURCE 3 ORGANISM_TAXID: 2371; SOURCE 4 GENE: XF1436; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: XYLELLA FASTIDIOSA; SOURCE 12 ORGANISM_TAXID: 2371; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PET28A(+); SOURCE 18 OTHER_DETAILS: CHAIN T IS DERIVED FROM THE EXPRESSION SYSTEM THAT SOURCE 19 WAS CO-PURIFIED WITH THE PROTEIN (XFDSBA) KEYWDS DISULFIDE OXIDOREDUCTASE, DSBA, THIOREDOXIN FOLD, REDOX-ACTIVE KEYWDS 2 CENTER, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.C.RINALDI,B.G.GUIMARAES REVDAT 5 21-FEB-24 2REM 1 REMARK REVDAT 4 25-OCT-17 2REM 1 REMARK REVDAT 3 24-FEB-09 2REM 1 VERSN REVDAT 2 14-OCT-08 2REM 1 REMARK REVDAT 1 07-OCT-08 2REM 0 JRNL AUTH F.C.RINALDI,B.G.GUIMARAES JRNL TITL RESIDUES SUBSTITUTION IN THE ACTIVE SITE OF DSBA MAY JRNL TITL 2 COMPENSATE FOR THE LACK OF THE CANONICAL MOTIF CPHC JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 52137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2657 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3488 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 178 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4466 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 485 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : 1.09000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4614 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6288 ; 1.288 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 579 ; 5.475 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;33.270 ;22.431 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 664 ;14.155 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;20.641 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 673 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3655 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2654 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3284 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 573 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 113 ; 0.273 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2904 ; 0.688 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4616 ; 1.116 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1896 ; 2.098 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1668 ; 3.408 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 37.5894 6.2748 4.5213 REMARK 3 T TENSOR REMARK 3 T11: -0.1486 T22: -0.1851 REMARK 3 T33: -0.1324 T12: -0.0174 REMARK 3 T13: 0.0228 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.9787 L22: 1.0050 REMARK 3 L33: 3.4310 L12: -0.3533 REMARK 3 L13: 1.1501 L23: -0.6863 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: -0.0631 S13: 0.0324 REMARK 3 S21: 0.0268 S22: -0.0065 S23: -0.0325 REMARK 3 S31: -0.0354 S32: 0.0259 S33: 0.0193 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 190 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7523 -7.0933 31.5441 REMARK 3 T TENSOR REMARK 3 T11: -0.1611 T22: -0.0963 REMARK 3 T33: -0.1217 T12: -0.0152 REMARK 3 T13: 0.0185 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 2.2547 L22: 1.0743 REMARK 3 L33: 3.8989 L12: -0.1746 REMARK 3 L13: 0.8633 L23: -1.0636 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: 0.2193 S13: 0.1445 REMARK 3 S21: -0.0256 S22: 0.0845 S23: 0.1070 REMARK 3 S31: 0.0040 S32: -0.0189 S33: -0.0623 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 193 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6013 -8.2248 -21.5007 REMARK 3 T TENSOR REMARK 3 T11: -0.1330 T22: -0.1059 REMARK 3 T33: -0.1548 T12: -0.0087 REMARK 3 T13: -0.0021 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.0357 L22: 1.6203 REMARK 3 L33: 1.4524 L12: -1.1138 REMARK 3 L13: 0.0448 L23: 0.4104 REMARK 3 S TENSOR REMARK 3 S11: 0.0516 S12: 0.1108 S13: 0.1126 REMARK 3 S21: -0.0892 S22: -0.1556 S23: 0.0679 REMARK 3 S31: -0.0598 S32: -0.2386 S33: 0.1040 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2REM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-05; 24-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : LNLS; NSLS REMARK 200 BEAMLINE : D03B-MX1; X26C REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4310; 0.9795 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL MONOCHROMATOR REMARK 200 SI(111); SINGLE CRYSTAL REMARK 200 MONOCHROMATOR SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52143 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.47900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.1M ACETATE CHLORIDE, REMARK 280 GUANIDINE HYDROCHLORIDE, PH 5.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 100.05850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.86100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 100.05850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.86100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 194 REMARK 465 MET B 2 REMARK 465 ASN B 3 REMARK 465 SER B 191 REMARK 465 HIS B 192 REMARK 465 GLY B 193 REMARK 465 ARG B 194 REMARK 465 MET C 2 REMARK 465 ARG C 194 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 148 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR A 148 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 276 O HOH A 388 2.01 REMARK 500 O HOH A 377 O HOH A 388 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C GLY C 193 O HOH A 302 4545 1.86 REMARK 500 O GLY C 193 O HOH A 302 4545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 10 -55.80 -120.81 REMARK 500 GLU B 101 -56.93 -124.05 REMARK 500 GLU C 10 -57.48 -121.99 REMARK 500 UNK T 3 -155.02 -88.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE ACTUAL SEQUENCE OF CHAIN T IS UNKNOWN. THESE RESIDUES WERE REMARK 999 MODELED AS UNK DUE TO WEAK ELECTRON DENSITY. DBREF 2REM A 2 194 UNP Q9PDE3 Q9PDE3_XYLFA 1 193 DBREF 2REM B 2 194 UNP Q9PDE3 Q9PDE3_XYLFA 1 193 DBREF 2REM C 2 194 UNP Q9PDE3 Q9PDE3_XYLFA 1 193 DBREF 2REM T 2 9 PDB 2REM 2REM 2 9 SEQRES 1 A 193 MET ASN HIS LEU PRO VAL VAL GLY GLU ASP TYR VAL GLU SEQRES 2 A 193 ILE PRO ASP GLY ARG PRO PHE ALA PRO LEU ALA GLY LYS SEQRES 3 A 193 ILE GLU VAL VAL GLU ILE PHE GLY TYR THR CYS PRO HIS SEQRES 4 A 193 CYS ALA HIS PHE ASP SER LYS LEU GLN ALA TRP GLY ALA SEQRES 5 A 193 ARG GLN ALA LYS ASP VAL ARG PHE THR LEU VAL PRO ALA SEQRES 6 A 193 VAL PHE GLY GLY VAL TRP ASP PRO PHE ALA ARG ALA TYR SEQRES 7 A 193 LEU ALA ALA ASP VAL LEU GLY VAL ALA LYS ARG SER HIS SEQRES 8 A 193 THR ALA MET PHE GLU ALA ILE HIS GLU LYS GLY SER VAL SEQRES 9 A 193 PRO ILE GLN ASN VAL GLY PRO ASP GLU LEU ALA VAL PHE SEQRES 10 A 193 TYR ALA GLY TYR GLY VAL GLN PRO ASP ARG PHE VAL ALA SEQRES 11 A 193 THR PHE ASN GLY PRO GLU VAL GLU LYS ARG PHE GLN ALA SEQRES 12 A 193 ALA ARG ALA TYR ALA LEU LYS VAL ARG PRO VAL GLY THR SEQRES 13 A 193 PRO THR ILE VAL VAL ASN GLY ARG TYR MET VAL THR GLY SEQRES 14 A 193 HIS ASP PHE GLU ASP THR LEU ARG ILE THR ASP TYR LEU SEQRES 15 A 193 VAL SER ARG GLU ARG ALA ALA SER HIS GLY ARG SEQRES 1 B 193 MET ASN HIS LEU PRO VAL VAL GLY GLU ASP TYR VAL GLU SEQRES 2 B 193 ILE PRO ASP GLY ARG PRO PHE ALA PRO LEU ALA GLY LYS SEQRES 3 B 193 ILE GLU VAL VAL GLU ILE PHE GLY TYR THR CYS PRO HIS SEQRES 4 B 193 CYS ALA HIS PHE ASP SER LYS LEU GLN ALA TRP GLY ALA SEQRES 5 B 193 ARG GLN ALA LYS ASP VAL ARG PHE THR LEU VAL PRO ALA SEQRES 6 B 193 VAL PHE GLY GLY VAL TRP ASP PRO PHE ALA ARG ALA TYR SEQRES 7 B 193 LEU ALA ALA ASP VAL LEU GLY VAL ALA LYS ARG SER HIS SEQRES 8 B 193 THR ALA MET PHE GLU ALA ILE HIS GLU LYS GLY SER VAL SEQRES 9 B 193 PRO ILE GLN ASN VAL GLY PRO ASP GLU LEU ALA VAL PHE SEQRES 10 B 193 TYR ALA GLY TYR GLY VAL GLN PRO ASP ARG PHE VAL ALA SEQRES 11 B 193 THR PHE ASN GLY PRO GLU VAL GLU LYS ARG PHE GLN ALA SEQRES 12 B 193 ALA ARG ALA TYR ALA LEU LYS VAL ARG PRO VAL GLY THR SEQRES 13 B 193 PRO THR ILE VAL VAL ASN GLY ARG TYR MET VAL THR GLY SEQRES 14 B 193 HIS ASP PHE GLU ASP THR LEU ARG ILE THR ASP TYR LEU SEQRES 15 B 193 VAL SER ARG GLU ARG ALA ALA SER HIS GLY ARG SEQRES 1 C 193 MET ASN HIS LEU PRO VAL VAL GLY GLU ASP TYR VAL GLU SEQRES 2 C 193 ILE PRO ASP GLY ARG PRO PHE ALA PRO LEU ALA GLY LYS SEQRES 3 C 193 ILE GLU VAL VAL GLU ILE PHE GLY TYR THR CYS PRO HIS SEQRES 4 C 193 CYS ALA HIS PHE ASP SER LYS LEU GLN ALA TRP GLY ALA SEQRES 5 C 193 ARG GLN ALA LYS ASP VAL ARG PHE THR LEU VAL PRO ALA SEQRES 6 C 193 VAL PHE GLY GLY VAL TRP ASP PRO PHE ALA ARG ALA TYR SEQRES 7 C 193 LEU ALA ALA ASP VAL LEU GLY VAL ALA LYS ARG SER HIS SEQRES 8 C 193 THR ALA MET PHE GLU ALA ILE HIS GLU LYS GLY SER VAL SEQRES 9 C 193 PRO ILE GLN ASN VAL GLY PRO ASP GLU LEU ALA VAL PHE SEQRES 10 C 193 TYR ALA GLY TYR GLY VAL GLN PRO ASP ARG PHE VAL ALA SEQRES 11 C 193 THR PHE ASN GLY PRO GLU VAL GLU LYS ARG PHE GLN ALA SEQRES 12 C 193 ALA ARG ALA TYR ALA LEU LYS VAL ARG PRO VAL GLY THR SEQRES 13 C 193 PRO THR ILE VAL VAL ASN GLY ARG TYR MET VAL THR GLY SEQRES 14 C 193 HIS ASP PHE GLU ASP THR LEU ARG ILE THR ASP TYR LEU SEQRES 15 C 193 VAL SER ARG GLU ARG ALA ALA SER HIS GLY ARG SEQRES 1 T 8 UNK UNK UNK UNK UNK UNK UNK UNK FORMUL 5 HOH *485(H2 O) HELIX 1 1 CYS A 38 ARG A 54 1 17 HELIX 2 2 VAL A 71 LEU A 85 1 15 HELIX 3 3 VAL A 87 GLU A 101 1 15 HELIX 4 4 GLY A 111 GLY A 121 1 11 HELIX 5 5 GLN A 125 ASN A 134 1 10 HELIX 6 6 GLY A 135 ARG A 153 1 19 HELIX 7 7 ASP A 172 HIS A 192 1 21 HELIX 8 8 CYS B 38 ARG B 54 1 17 HELIX 9 9 VAL B 71 LEU B 85 1 15 HELIX 10 10 VAL B 87 GLU B 101 1 15 HELIX 11 11 GLY B 111 GLY B 121 1 11 HELIX 12 12 GLN B 125 ASN B 134 1 10 HELIX 13 13 GLY B 135 ARG B 153 1 19 HELIX 14 14 ASP B 172 ALA B 190 1 19 HELIX 15 15 CYS C 38 ARG C 54 1 17 HELIX 16 16 VAL C 71 LEU C 85 1 15 HELIX 17 17 VAL C 87 GLU C 101 1 15 HELIX 18 18 GLY C 111 GLY C 121 1 11 HELIX 19 19 GLN C 125 ASN C 134 1 10 HELIX 20 20 GLY C 135 ARG C 153 1 19 HELIX 21 21 ASP C 172 HIS C 192 1 21 SHEET 1 A 5 TYR A 12 GLU A 14 0 SHEET 2 A 5 TYR A 166 VAL A 168 -1 O MET A 167 N VAL A 13 SHEET 3 A 5 THR A 159 VAL A 162 -1 N VAL A 162 O TYR A 166 SHEET 4 A 5 ILE A 28 PHE A 34 -1 N ILE A 33 O THR A 159 SHEET 5 A 5 VAL A 59 PRO A 65 1 O VAL A 64 N GLU A 32 SHEET 1 B 5 TYR B 12 GLU B 14 0 SHEET 2 B 5 TYR B 166 VAL B 168 -1 O MET B 167 N VAL B 13 SHEET 3 B 5 THR B 159 VAL B 162 -1 N ILE B 160 O VAL B 168 SHEET 4 B 5 ILE B 28 PHE B 34 -1 N ILE B 33 O THR B 159 SHEET 5 B 5 VAL B 59 PRO B 65 1 O ARG B 60 N ILE B 28 SHEET 1 C 5 TYR C 12 GLU C 14 0 SHEET 2 C 5 TYR C 166 VAL C 168 -1 O MET C 167 N VAL C 13 SHEET 3 C 5 THR C 159 VAL C 162 -1 N ILE C 160 O VAL C 168 SHEET 4 C 5 ILE C 28 PHE C 34 -1 N ILE C 33 O THR C 159 SHEET 5 C 5 VAL C 59 PRO C 65 1 O VAL C 64 N GLU C 32 SHEET 1 D 2 GLY C 156 THR C 157 0 SHEET 2 D 2 UNK T 5 UNK T 6 -1 O UNK T 5 N THR C 157 CISPEP 1 THR A 157 PRO A 158 0 -4.87 CISPEP 2 THR B 157 PRO B 158 0 -2.49 CISPEP 3 THR C 157 PRO C 158 0 -6.45 CRYST1 200.117 41.722 79.807 90.00 95.87 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004997 0.000000 0.000513 0.00000 SCALE2 0.000000 0.023968 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012596 0.00000