HEADER SIGNALING PROTEIN/LIPOPROTEIN 27-SEP-07 2REX TITLE CRYSTAL STRUCTURE OF THE EFFECTOR DOMAIN OF PLXNB1 BOUND WITH RND1 TITLE 2 GTPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLEXIN-B1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: RESIDUES 1743-1862; COMPND 5 SYNONYM: SEMAPHORIN RECEPTOR SEP; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RHO-RELATED GTP-BINDING PROTEIN RHO6; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: RESIDUES 5-200; COMPND 11 SYNONYM: RHO FAMILY GTPASE 1, RND1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLXNB1, KIAA0407, PLXN5, SEP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: RND1, RHO6; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS COMPLEX, STRUCTURAL GENOMICS CONSORTIUM, SGC, GTPASE, GNP, PLEXIN, KEYWDS 2 EFFECTOR DOMAIN, GLYCOPROTEIN, MEMBRANE, PHOSPHORYLATION, RECEPTOR, KEYWDS 3 SECRETED, TRANSMEMBRANE, CYTOSKELETON, GTP-BINDING, LIPOPROTEIN, KEYWDS 4 METHYLATION, NUCLEOTIDE-BINDING, PRENYLATION, SIGNALING PROTEIN- KEYWDS 5 LIPOPROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.TONG,W.TEMPEL,L.SHEN,C.H.ARROWSMITH,A.M.EDWARDS,M.SUNDSTROM, AUTHOR 2 J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 30-AUG-23 2REX 1 REMARK SEQADV LINK REVDAT 4 25-OCT-17 2REX 1 REMARK REVDAT 3 13-JUL-11 2REX 1 VERSN REVDAT 2 24-FEB-09 2REX 1 VERSN REVDAT 1 20-NOV-07 2REX 0 JRNL AUTH Y.TONG,W.TEMPEL,L.SHEN,C.H.ARROWSMITH,A.M.EDWARDS, JRNL AUTH 2 M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK JRNL TITL CRYSTAL STRUCTURE OF THE EFFECTOR DOMAIN OF PLXNB1 BOUND JRNL TITL 2 WITH RND1 GTPASE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 36863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.710 REMARK 3 FREE R VALUE TEST SET COUNT : 999 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2305 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4279 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.87000 REMARK 3 B22 (A**2) : -2.83100 REMARK 3 B33 (A**2) : 0.58500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.92000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.251 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.089 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4457 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2906 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6081 ; 1.448 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7146 ; 0.949 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 566 ; 6.345 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;33.303 ;24.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 721 ;14.752 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;22.082 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 727 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4832 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 811 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 781 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2988 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2071 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2304 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 156 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.196 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.400 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 21 ; 0.197 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.124 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2917 ; 0.595 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1133 ; 0.128 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4579 ; 0.936 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1801 ; 1.508 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1498 ; 2.327 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1746 A 1852 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6909 -47.2349 6.9249 REMARK 3 T TENSOR REMARK 3 T11: 0.0654 T22: -0.1003 REMARK 3 T33: 0.0486 T12: -0.0148 REMARK 3 T13: 0.0576 T23: 0.0870 REMARK 3 L TENSOR REMARK 3 L11: 1.5483 L22: 4.4585 REMARK 3 L33: 4.6060 L12: 0.5692 REMARK 3 L13: 0.4748 L23: 2.3788 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: 0.3161 S13: 0.3174 REMARK 3 S21: -0.4669 S22: -0.0062 S23: -0.0951 REMARK 3 S31: -0.7367 S32: 0.0936 S33: -0.0198 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 188 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7864 -62.8342 27.5641 REMARK 3 T TENSOR REMARK 3 T11: -0.1152 T22: -0.0854 REMARK 3 T33: -0.1200 T12: -0.0001 REMARK 3 T13: 0.0226 T23: -0.0604 REMARK 3 L TENSOR REMARK 3 L11: 2.7436 L22: 5.0421 REMARK 3 L33: 3.1013 L12: 1.0575 REMARK 3 L13: -1.5352 L23: -0.1606 REMARK 3 S TENSOR REMARK 3 S11: 0.2623 S12: -0.1067 S13: 0.3646 REMARK 3 S21: 0.3037 S22: -0.2033 S23: 0.5130 REMARK 3 S31: -0.3237 S32: -0.3247 S33: -0.0590 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1746 C 1852 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6767 -21.8628 21.0376 REMARK 3 T TENSOR REMARK 3 T11: -0.0753 T22: -0.0994 REMARK 3 T33: -0.0999 T12: -0.0715 REMARK 3 T13: -0.0654 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 4.6173 L22: 3.5044 REMARK 3 L33: 1.4222 L12: -1.9355 REMARK 3 L13: -0.4289 L23: 0.2760 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: -0.2648 S13: -0.6722 REMARK 3 S21: 0.0956 S22: -0.0379 S23: 0.2521 REMARK 3 S31: 0.3328 S32: -0.2363 S33: 0.0771 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 7 D 188 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4757 -6.6241 0.0131 REMARK 3 T TENSOR REMARK 3 T11: -0.1434 T22: -0.0910 REMARK 3 T33: -0.1345 T12: 0.0460 REMARK 3 T13: 0.0033 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 2.3274 L22: 3.8074 REMARK 3 L33: 3.3989 L12: 0.3330 REMARK 3 L13: -0.9136 L23: -0.9933 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: 0.3245 S13: -0.1831 REMARK 3 S21: -0.5172 S22: -0.1417 S23: -0.2546 REMARK 3 S31: 0.2075 S32: 0.0262 S33: 0.0740 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOMIC B FACTORS ARE RESIDUALS OF TLS REFINEMENT. REMARK 3 PROGRAMS COOT, MOLPROBITY HAVE ALSO BEEN USED IN REFINEMENT. REMARK 4 REMARK 4 2REX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36932 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.23100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2CLS,2R2O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M CALCIUM CHLORIDE, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.06800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.82650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.06800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.82650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHORS STATE THAT THE RELATIONSHIPS BETWEEN CHAINS A REMARK 300 AND B AND BETWEEN CHAINS C AND D OF THE ASYMMETRIC UNIT REFLECT THE REMARK 300 BIOLOGICALLY RELEVANT INTERFACE BETWEEN THE PLEXIN EFFECTOR DOMAIN REMARK 300 AND RND1 GTPASE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -71.65300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11120 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 -71.65300 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 -71.65300 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1742 REMARK 465 ASP A 1743 REMARK 465 VAL A 1744 REMARK 465 GLU A 1745 REMARK 465 LEU A 1853 REMARK 465 THR A 1854 REMARK 465 LYS A 1855 REMARK 465 HIS A 1856 REMARK 465 VAL A 1857 REMARK 465 LEU A 1858 REMARK 465 ARG A 1859 REMARK 465 GLU A 1860 REMARK 465 ASN A 1861 REMARK 465 GLN A 1862 REMARK 465 GLY B 4 REMARK 465 ARG B 5 REMARK 465 ALA B 6 REMARK 465 PRO B 7 REMARK 465 GLN B 8 REMARK 465 PRO B 9 REMARK 465 VAL B 10 REMARK 465 VAL B 11 REMARK 465 ALA B 12 REMARK 465 THR B 56 REMARK 465 GLU B 57 REMARK 465 GLU B 58 REMARK 465 ASP B 101 REMARK 465 SER B 102 REMARK 465 ASN B 189 REMARK 465 LYS B 190 REMARK 465 PRO B 191 REMARK 465 SER B 192 REMARK 465 PRO B 193 REMARK 465 LEU B 194 REMARK 465 PRO B 195 REMARK 465 GLN B 196 REMARK 465 LYS B 197 REMARK 465 SER B 198 REMARK 465 PRO B 199 REMARK 465 VAL B 200 REMARK 465 GLY C 1742 REMARK 465 ASP C 1743 REMARK 465 VAL C 1744 REMARK 465 GLU C 1745 REMARK 465 LEU C 1853 REMARK 465 THR C 1854 REMARK 465 LYS C 1855 REMARK 465 HIS C 1856 REMARK 465 VAL C 1857 REMARK 465 LEU C 1858 REMARK 465 ARG C 1859 REMARK 465 GLU C 1860 REMARK 465 ASN C 1861 REMARK 465 GLN C 1862 REMARK 465 GLY D 4 REMARK 465 ARG D 5 REMARK 465 ALA D 6 REMARK 465 ASP D 101 REMARK 465 SER D 102 REMARK 465 ASN D 189 REMARK 465 LYS D 190 REMARK 465 PRO D 191 REMARK 465 SER D 192 REMARK 465 PRO D 193 REMARK 465 LEU D 194 REMARK 465 PRO D 195 REMARK 465 GLN D 196 REMARK 465 LYS D 197 REMARK 465 SER D 198 REMARK 465 PRO D 199 REMARK 465 VAL D 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1747 CD NE CZ NH1 NH2 REMARK 470 LYS A1790 CE NZ REMARK 470 GLN A1827 CG CD OE1 NE2 REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 ARG B 60 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 LYS B 105 CG CD CE NZ REMARK 470 GLU B 138 CD OE1 OE2 REMARK 470 HIS B 141 ND1 CD2 CE1 NE2 REMARK 470 GLN B 142 OE1 NE2 REMARK 470 LYS B 143 NZ REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 LYS B 174 CE NZ REMARK 470 LEU B 188 CG CD1 CD2 REMARK 470 ARG C1747 CD NE CZ NH1 NH2 REMARK 470 LYS C1770 CE NZ REMARK 470 LYS C1790 CE NZ REMARK 470 GLU C1825 CG CD OE1 OE2 REMARK 470 ARG D 13 NE CZ NH1 NH2 REMARK 470 GLU D 55 CG CD OE1 OE2 REMARK 470 GLU D 57 CD OE1 OE2 REMARK 470 GLU D 58 CD OE1 OE2 REMARK 470 ARG D 60 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 62 CD OE1 OE2 REMARK 470 GLU D 98 CG CD OE1 OE2 REMARK 470 LYS D 105 CG CD CE NZ REMARK 470 GLU D 138 CG CD OE1 OE2 REMARK 470 HIS D 141 ND1 CD2 CE1 NE2 REMARK 470 GLN D 142 OE1 NE2 REMARK 470 LYS D 143 NZ REMARK 470 GLU D 150 CD OE1 OE2 REMARK 470 LYS D 174 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A1840 37.92 72.86 REMARK 500 GLN B 23 14.48 59.71 REMARK 500 VAL B 46 -77.66 -105.11 REMARK 500 PRO B 97 20.86 -58.17 REMARK 500 CYS B 115 48.85 -152.09 REMARK 500 ALA C1812 13.51 -145.47 REMARK 500 LYS C1840 38.42 78.66 REMARK 500 GLN D 23 18.40 58.62 REMARK 500 VAL D 46 -74.54 -107.31 REMARK 500 THR D 56 -166.90 -100.34 REMARK 500 PRO D 97 23.28 -53.36 REMARK 500 CYS D 115 45.95 -145.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 550 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 27 OG1 REMARK 620 2 THR B 45 OG1 88.0 REMARK 620 3 GNP B 500 O2G 168.8 85.5 REMARK 620 4 GNP B 500 O1B 86.1 172.1 99.3 REMARK 620 5 HOH B 567 O 93.1 92.7 96.4 93.0 REMARK 620 6 HOH B 581 O 87.4 87.7 83.2 86.7 179.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 551 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 38 O REMARK 620 2 GLU B 40 OE1 80.7 REMARK 620 3 HOH B 564 O 156.1 75.9 REMARK 620 4 HOH B 565 O 96.2 82.2 85.8 REMARK 620 5 HOH B 566 O 85.9 93.8 90.4 175.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 550 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR D 27 OG1 REMARK 620 2 THR D 45 OG1 92.5 REMARK 620 3 GNP D 500 O1B 85.4 173.8 REMARK 620 4 GNP D 500 O3G 172.4 94.3 87.5 REMARK 620 5 HOH D 568 O 89.8 96.7 89.2 92.9 REMARK 620 6 HOH D 590 O 83.1 90.2 83.7 93.3 170.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 551 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR D 38 O REMARK 620 2 GLU D 40 OE1 74.0 REMARK 620 3 HOH D 582 O 96.1 86.2 REMARK 620 4 HOH D 583 O 87.6 90.8 174.4 REMARK 620 5 HOH D 584 O 155.3 81.5 84.7 90.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP D 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX C 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 552 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 553 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 554 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX C 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX D 553 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 555 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 556 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 557 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 558 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 559 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 560 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 561 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX D 554 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX C 20 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX D 556 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX D 559 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX D 560 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX C 28 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX D 561 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 30 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CLS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN RND1 GTPASE IN THE ACTIVE GTP-BOUND REMARK 900 STATE - A COMPLEX COMPONENT AND MOLECULAR REPLACEMENT MODEL REMARK 900 RELATED ID: 2R2O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EFFECTOR DOMAIN OF HUMAN PLEXIN B1 - A COMPLEX REMARK 900 COMPONENT AND MOLECULAR REPLACEMENT MODEL DBREF 2REX A 1743 1862 UNP O43157 PLXB1_HUMAN 1743 1862 DBREF 2REX B 5 200 UNP Q92730 RND1_HUMAN 5 200 DBREF 2REX C 1743 1862 UNP O43157 PLXB1_HUMAN 1743 1862 DBREF 2REX D 5 200 UNP Q92730 RND1_HUMAN 5 200 SEQADV 2REX GLY A 1742 UNP O43157 EXPRESSION TAG SEQADV 2REX GLY B 4 UNP Q92730 EXPRESSION TAG SEQADV 2REX GLY C 1742 UNP O43157 EXPRESSION TAG SEQADV 2REX GLY D 4 UNP Q92730 EXPRESSION TAG SEQRES 1 A 121 GLY ASP VAL GLU TYR ARG PRO LEU THR LEU ASN ALA LEU SEQRES 2 A 121 LEU ALA VAL GLY PRO GLY ALA GLY GLU ALA GLN GLY VAL SEQRES 3 A 121 PRO VAL LYS VAL LEU ASP CYS ASP THR ILE SER GLN ALA SEQRES 4 A 121 LYS GLU LYS MET LEU ASP GLN LEU TYR LYS GLY VAL PRO SEQRES 5 A 121 LEU THR GLN ARG PRO ASP PRO ARG THR LEU ASP VAL GLU SEQRES 6 A 121 TRP ARG SER GLY VAL ALA GLY HIS LEU ILE LEU SER ASP SEQRES 7 A 121 GLU ASP VAL THR SER GLU VAL GLN GLY LEU TRP ARG ARG SEQRES 8 A 121 LEU ASN THR LEU GLN HIS TYR LYS VAL PRO ASP GLY ALA SEQRES 9 A 121 THR VAL ALA LEU VAL PRO CYS LEU THR LYS HIS VAL LEU SEQRES 10 A 121 ARG GLU ASN GLN SEQRES 1 B 197 GLY ARG ALA PRO GLN PRO VAL VAL ALA ARG CYS LYS LEU SEQRES 2 B 197 VAL LEU VAL GLY ASP VAL GLN CYS GLY LYS THR ALA MET SEQRES 3 B 197 LEU GLN VAL LEU ALA LYS ASP CYS TYR PRO GLU THR TYR SEQRES 4 B 197 VAL PRO THR VAL PHE GLU ASN TYR THR ALA CYS LEU GLU SEQRES 5 B 197 THR GLU GLU GLN ARG VAL GLU LEU SER LEU TRP ASP THR SEQRES 6 B 197 SER GLY SER PRO TYR TYR ASP ASN VAL ARG PRO LEU CYS SEQRES 7 B 197 TYR SER ASP SER ASP ALA VAL LEU LEU CYS PHE ASP ILE SEQRES 8 B 197 SER ARG PRO GLU THR VAL ASP SER ALA LEU LYS LYS TRP SEQRES 9 B 197 ARG THR GLU ILE LEU ASP TYR CYS PRO SER THR ARG VAL SEQRES 10 B 197 LEU LEU ILE GLY CYS LYS THR ASP LEU ARG THR ASP LEU SEQRES 11 B 197 SER THR LEU MET GLU LEU SER HIS GLN LYS GLN ALA PRO SEQRES 12 B 197 ILE SER TYR GLU GLN GLY CYS ALA ILE ALA LYS GLN LEU SEQRES 13 B 197 GLY ALA GLU ILE TYR LEU GLU GLY SER ALA PHE THR SER SEQRES 14 B 197 GLU LYS SER ILE HIS SER ILE PHE ARG THR ALA SER MET SEQRES 15 B 197 LEU CYS LEU ASN LYS PRO SER PRO LEU PRO GLN LYS SER SEQRES 16 B 197 PRO VAL SEQRES 1 C 121 GLY ASP VAL GLU TYR ARG PRO LEU THR LEU ASN ALA LEU SEQRES 2 C 121 LEU ALA VAL GLY PRO GLY ALA GLY GLU ALA GLN GLY VAL SEQRES 3 C 121 PRO VAL LYS VAL LEU ASP CYS ASP THR ILE SER GLN ALA SEQRES 4 C 121 LYS GLU LYS MET LEU ASP GLN LEU TYR LYS GLY VAL PRO SEQRES 5 C 121 LEU THR GLN ARG PRO ASP PRO ARG THR LEU ASP VAL GLU SEQRES 6 C 121 TRP ARG SER GLY VAL ALA GLY HIS LEU ILE LEU SER ASP SEQRES 7 C 121 GLU ASP VAL THR SER GLU VAL GLN GLY LEU TRP ARG ARG SEQRES 8 C 121 LEU ASN THR LEU GLN HIS TYR LYS VAL PRO ASP GLY ALA SEQRES 9 C 121 THR VAL ALA LEU VAL PRO CYS LEU THR LYS HIS VAL LEU SEQRES 10 C 121 ARG GLU ASN GLN SEQRES 1 D 197 GLY ARG ALA PRO GLN PRO VAL VAL ALA ARG CYS LYS LEU SEQRES 2 D 197 VAL LEU VAL GLY ASP VAL GLN CYS GLY LYS THR ALA MET SEQRES 3 D 197 LEU GLN VAL LEU ALA LYS ASP CYS TYR PRO GLU THR TYR SEQRES 4 D 197 VAL PRO THR VAL PHE GLU ASN TYR THR ALA CYS LEU GLU SEQRES 5 D 197 THR GLU GLU GLN ARG VAL GLU LEU SER LEU TRP ASP THR SEQRES 6 D 197 SER GLY SER PRO TYR TYR ASP ASN VAL ARG PRO LEU CYS SEQRES 7 D 197 TYR SER ASP SER ASP ALA VAL LEU LEU CYS PHE ASP ILE SEQRES 8 D 197 SER ARG PRO GLU THR VAL ASP SER ALA LEU LYS LYS TRP SEQRES 9 D 197 ARG THR GLU ILE LEU ASP TYR CYS PRO SER THR ARG VAL SEQRES 10 D 197 LEU LEU ILE GLY CYS LYS THR ASP LEU ARG THR ASP LEU SEQRES 11 D 197 SER THR LEU MET GLU LEU SER HIS GLN LYS GLN ALA PRO SEQRES 12 D 197 ILE SER TYR GLU GLN GLY CYS ALA ILE ALA LYS GLN LEU SEQRES 13 D 197 GLY ALA GLU ILE TYR LEU GLU GLY SER ALA PHE THR SER SEQRES 14 D 197 GLU LYS SER ILE HIS SER ILE PHE ARG THR ALA SER MET SEQRES 15 D 197 LEU CYS LEU ASN LYS PRO SER PRO LEU PRO GLN LYS SER SEQRES 16 D 197 PRO VAL HET UNX A 1 1 HET UNX A 5 1 HET UNX A 11 1 HET UNX A 30 1 HET MG B 550 1 HET CA B 551 1 HET GNP B 500 32 HET UNX B 552 1 HET UNX B 553 1 HET UNX B 554 1 HET UNX B 555 1 HET UNX B 556 1 HET UNX B 557 1 HET UNX B 558 1 HET UNX B 559 1 HET UNX B 560 1 HET UNX B 561 1 HET UNX B 562 1 HET UNX C 2 1 HET UNX C 3 1 HET UNX C 9 1 HET UNX C 20 1 HET UNX C 28 1 HET MG D 550 1 HET CA D 551 1 HET GNP D 500 32 HET UNX D 552 1 HET UNX D 553 1 HET UNX D 554 1 HET UNX D 555 1 HET UNX D 556 1 HET UNX D 557 1 HET UNX D 558 1 HET UNX D 559 1 HET UNX D 560 1 HET UNX D 561 1 HETNAM UNX UNKNOWN ATOM OR ION HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 5 UNX 30(X) FORMUL 9 MG 2(MG 2+) FORMUL 10 CA 2(CA 2+) FORMUL 11 GNP 2(C10 H17 N6 O13 P3) FORMUL 41 HOH *75(H2 O) HELIX 1 1 THR A 1776 TYR A 1789 1 14 HELIX 2 2 PRO A 1793 ARG A 1797 5 5 HELIX 3 3 ASP A 1799 ARG A 1801 5 3 HELIX 4 4 THR A 1835 LYS A 1840 1 6 HELIX 5 5 GLY B 25 ASP B 36 1 12 HELIX 6 6 SER B 71 ASP B 75 5 5 HELIX 7 7 VAL B 77 SER B 83 5 7 HELIX 8 8 ALA B 103 CYS B 115 1 13 HELIX 9 9 LYS B 126 THR B 131 5 6 HELIX 10 10 ASP B 132 GLN B 142 1 11 HELIX 11 11 SER B 148 LEU B 159 1 12 HELIX 12 12 SER B 172 LEU B 188 1 17 HELIX 13 13 THR C 1776 TYR C 1789 1 14 HELIX 14 14 ASP C 1799 ARG C 1801 5 3 HELIX 15 15 THR C 1835 LYS C 1840 1 6 HELIX 16 16 GLY D 25 ASP D 36 1 12 HELIX 17 17 SER D 71 ASP D 75 5 5 HELIX 18 18 VAL D 77 SER D 83 5 7 HELIX 19 19 ALA D 103 CYS D 115 1 13 HELIX 20 20 LYS D 126 THR D 131 5 6 HELIX 21 21 ASP D 132 GLN D 142 1 11 HELIX 22 22 SER D 148 LEU D 159 1 12 HELIX 23 23 SER D 172 CYS D 187 1 16 SHEET 1 A 5 VAL A1767 LEU A1772 0 SHEET 2 A 5 PRO A1748 LEU A1755 -1 N ALA A1753 O VAL A1767 SHEET 3 A 5 THR A1846 PRO A1851 1 O LEU A1849 N LEU A1754 SHEET 4 A 5 LEU A1803 SER A1809 -1 N ASP A1804 O VAL A1850 SHEET 5 A 5 GLY A1813 LEU A1817 -1 O LEU A1815 N TRP A1807 SHEET 1 B 4 VAL A1826 GLN A1827 0 SHEET 2 B 4 TRP A1830 ARG A1832 -1 O TRP A1830 N GLN A1827 SHEET 3 B 4 TRP C1830 ARG C1832 -1 O ARG C1831 N ARG A1831 SHEET 4 B 4 VAL C1826 GLN C1827 -1 N GLN C1827 O TRP C1830 SHEET 1 C 6 PHE B 47 LEU B 54 0 SHEET 2 C 6 VAL B 61 THR B 68 -1 O LEU B 65 N TYR B 50 SHEET 3 C 6 CYS B 14 VAL B 19 1 N CYS B 14 O SER B 64 SHEET 4 C 6 ALA B 87 ASP B 93 1 O CYS B 91 N VAL B 19 SHEET 5 C 6 ARG B 119 CYS B 125 1 O ILE B 123 N LEU B 90 SHEET 6 C 6 TYR B 164 GLU B 166 1 O LEU B 165 N LEU B 122 SHEET 1 D 5 VAL C1767 LEU C1772 0 SHEET 2 D 5 PRO C1748 LEU C1755 -1 N ALA C1753 O VAL C1767 SHEET 3 D 5 THR C1846 PRO C1851 1 O LEU C1849 N LEU C1754 SHEET 4 D 5 LEU C1803 SER C1809 -1 N GLU C1806 O ALA C1848 SHEET 5 D 5 GLY C1813 LEU C1817 -1 O LEU C1817 N VAL C1805 SHEET 1 E 6 PHE D 47 GLU D 55 0 SHEET 2 E 6 ARG D 60 THR D 68 -1 O LEU D 63 N ALA D 52 SHEET 3 E 6 VAL D 11 VAL D 19 1 N CYS D 14 O SER D 64 SHEET 4 E 6 ALA D 87 ASP D 93 1 O CYS D 91 N VAL D 19 SHEET 5 E 6 ARG D 119 CYS D 125 1 O ARG D 119 N VAL D 88 SHEET 6 E 6 ILE D 163 GLU D 166 1 O ILE D 163 N LEU D 122 SSBOND 1 CYS B 14 CYS B 187 1555 1555 2.04 SSBOND 2 CYS D 14 CYS D 187 1555 1555 2.04 LINK OG1 THR B 27 MG MG B 550 1555 1555 2.16 LINK O TYR B 38 CA CA B 551 1555 1555 2.34 LINK OE1 GLU B 40 CA CA B 551 1555 1555 2.38 LINK OG1 THR B 45 MG MG B 550 1555 1555 2.17 LINK O2G GNP B 500 MG MG B 550 1555 1555 2.14 LINK O1B GNP B 500 MG MG B 550 1555 1555 2.16 LINK MG MG B 550 O HOH B 567 1555 1555 2.18 LINK MG MG B 550 O HOH B 581 1555 1555 2.26 LINK CA CA B 551 O HOH B 564 1555 1555 2.45 LINK CA CA B 551 O HOH B 565 1555 1555 2.52 LINK CA CA B 551 O HOH B 566 1555 1555 2.21 LINK OG1 THR D 27 MG MG D 550 1555 1555 2.12 LINK O TYR D 38 CA CA D 551 1555 1555 2.34 LINK OE1 GLU D 40 CA CA D 551 1555 1555 2.34 LINK OG1 THR D 45 MG MG D 550 1555 1555 2.12 LINK O1B GNP D 500 MG MG D 550 1555 1555 2.13 LINK O3G GNP D 500 MG MG D 550 1555 1555 2.14 LINK MG MG D 550 O HOH D 568 1555 1555 2.25 LINK MG MG D 550 O HOH D 590 1555 1555 2.10 LINK CA CA D 551 O HOH D 582 1555 1555 2.62 LINK CA CA D 551 O HOH D 583 1555 1555 2.24 LINK CA CA D 551 O HOH D 584 1555 1555 2.46 SITE 1 AC1 5 THR B 27 THR B 45 GNP B 500 HOH B 567 SITE 2 AC1 5 HOH B 581 SITE 1 AC2 6 TYR B 38 GLU B 40 HOH B 564 HOH B 565 SITE 2 AC2 6 HOH B 566 GLU C1763 SITE 1 AC3 5 THR D 27 THR D 45 GNP D 500 HOH D 568 SITE 2 AC3 5 HOH D 590 SITE 1 AC4 6 GLU A1763 TYR D 38 GLU D 40 HOH D 582 SITE 2 AC4 6 HOH D 583 HOH D 584 SITE 1 AC5 27 VAL B 22 GLN B 23 CYS B 24 GLY B 25 SITE 2 AC5 27 LYS B 26 THR B 27 ALA B 28 TYR B 38 SITE 3 AC5 27 PRO B 39 GLU B 40 THR B 41 TYR B 42 SITE 4 AC5 27 THR B 45 THR B 68 SER B 69 GLY B 70 SITE 5 AC5 27 LYS B 126 ASP B 128 LEU B 129 SER B 168 SITE 6 AC5 27 ALA B 169 PHE B 170 MG B 550 UNX B 557 SITE 7 AC5 27 HOH B 571 HOH B 577 HOH B 581 SITE 1 AC6 28 VAL D 22 GLN D 23 CYS D 24 GLY D 25 SITE 2 AC6 28 LYS D 26 THR D 27 ALA D 28 TYR D 38 SITE 3 AC6 28 PRO D 39 GLU D 40 THR D 41 TYR D 42 SITE 4 AC6 28 THR D 45 THR D 68 GLY D 70 LYS D 126 SITE 5 AC6 28 ASP D 128 LEU D 129 ALA D 169 PHE D 170 SITE 6 AC6 28 MG D 550 UNX D 553 HOH D 565 HOH D 568 SITE 7 AC6 28 HOH D 570 HOH D 572 HOH D 580 HOH D 590 SITE 1 AC7 3 GLY A1762 GLU A1763 VAL A1811 SITE 1 AC8 3 ASP B 36 GLY C1762 GLU C1763 SITE 1 AC9 1 ILE C1816 SITE 1 BC1 2 THR B 45 VAL B 46 SITE 1 BC2 2 LEU A1815 ILE A1816 SITE 1 BC3 1 ASN B 49 SITE 1 BC4 5 MET B 29 GLY B 124 GLY B 167 ILE B 176 SITE 2 BC4 5 ILE B 179 SITE 1 BC5 3 ILE C1777 LYS C1781 HOH C1871 SITE 1 BC6 2 GLN D 23 GNP D 500 SITE 1 BC7 2 LYS A1781 HOH A1867 SITE 1 BC8 1 GLN B 23 SITE 1 BC9 5 VAL B 32 LEU B 33 ASP B 36 GLU B 173 SITE 2 BC9 5 HIS B 177 SITE 1 CC1 3 TYR B 38 GNP B 500 GLY C1844 SITE 1 CC2 1 TYR B 74 SITE 1 CC3 1 CYS B 153 SITE 1 CC4 2 SER B 134 MET B 137 SITE 1 CC5 2 GLU B 173 LYS B 174 SITE 1 CC6 1 VAL D 46 SITE 1 CC7 2 LEU C1836 VAL C1841 SITE 1 CC8 2 GLY A1844 TYR D 38 SITE 1 CC9 2 ASN D 49 THR D 51 SITE 1 DC1 1 ASN D 49 SITE 1 DC2 2 LYS C1770 GLN C1787 SITE 1 DC3 2 SER D 148 TYR D 149 SITE 1 DC4 2 ASP A1821 SER A1824 CRYST1 150.136 71.653 101.885 90.00 128.36 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006660 0.000000 0.005270 0.00000 SCALE2 0.000000 0.013960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012520 0.00000