HEADER GENE REGULATION 27-SEP-07 2REY TITLE CRYSTAL STRUCTURE OF THE PDZ DOMAIN OF HUMAN DISHEVELLED 2 (HOMOLOGOUS TITLE 2 TO DROSOPHILA DSH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN: RESIDUES 261-355; COMPND 5 SYNONYM: DISHEVELLED-2, DSH HOMOLOG 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DVL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS PDZ, BOUND PEPTIDE, PEPTIDE BINDING SITE, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, DEVELOPMENTAL PROTEIN, KEYWDS 3 PHOSPHORYLATION, WNT SIGNALING PATHWAY, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR E.PAPAGRIGORIOU,C.GILEADI,J.ELKINS,C.COOPER,E.UGOCHUKWU,A.TURNBULL, AUTHOR 2 A.C.W.PIKE,O.GILEADI,F.VON DELFT,M.SUNDSTROM,C.H.ARROWSMITH, AUTHOR 3 J.WEIGELT,A.M.EDWARDS,D.DOYLE,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 30-AUG-23 2REY 1 SEQADV REVDAT 4 25-OCT-17 2REY 1 REMARK REVDAT 3 13-JUL-11 2REY 1 VERSN REVDAT 2 24-FEB-09 2REY 1 VERSN REVDAT 1 23-OCT-07 2REY 0 JRNL AUTH E.PAPAGRIGORIOU,C.GILEADI,J.ELKINS,C.COOPER,E.UGOCHUKWU, JRNL AUTH 2 A.TURNBULL,A.C.W.PIKE,O.GILEADI,F.VON DELFT,M.SUNDSTROM, JRNL AUTH 3 C.H.ARROWSMITH,J.WEIGELT,A.M.EDWARDS,D.DOYLE JRNL TITL CRYSTAL STRUCTURE OF THE PDZ DOMAINS OF HUMAN DISHEVELLED 2 JRNL TITL 2 (HOMOLOGOUS TO DROSOPHILA DSH). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 599 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 827 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.996 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 724 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 460 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 990 ; 1.549 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1146 ; 0.932 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 103 ; 6.138 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 29 ;43.743 ;25.517 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 129 ;14.126 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;21.367 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 121 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 816 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 131 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 110 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 466 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 345 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 426 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 30 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.246 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 50 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 502 ; 3.656 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 196 ; 1.437 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 761 ; 4.451 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 269 ; 6.080 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 221 ; 7.610 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 263 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 41.8534 39.1344 8.5067 REMARK 3 T TENSOR REMARK 3 T11: -0.0491 T22: 0.0061 REMARK 3 T33: -0.1292 T12: -0.1119 REMARK 3 T13: -0.0345 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 27.0124 L22: 3.2100 REMARK 3 L33: 8.4073 L12: -0.1101 REMARK 3 L13: -9.6798 L23: 0.7781 REMARK 3 S TENSOR REMARK 3 S11: 0.3211 S12: -1.1751 S13: -0.0513 REMARK 3 S21: 0.3207 S22: -0.1696 S23: 0.0511 REMARK 3 S31: 0.0241 S32: -0.0406 S33: -0.1515 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 275 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5103 41.6888 2.9517 REMARK 3 T TENSOR REMARK 3 T11: -0.1254 T22: 0.2373 REMARK 3 T33: -0.1028 T12: 0.0260 REMARK 3 T13: 0.0102 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 18.9388 L22: 4.1854 REMARK 3 L33: 56.3612 L12: -4.3081 REMARK 3 L13: 4.8514 L23: -6.3302 REMARK 3 S TENSOR REMARK 3 S11: 0.1389 S12: -1.8314 S13: 0.5493 REMARK 3 S21: 0.1858 S22: 0.2917 S23: -0.0416 REMARK 3 S31: -0.6141 S32: 0.2597 S33: -0.4306 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 278 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5209 37.7683 -7.4681 REMARK 3 T TENSOR REMARK 3 T11: -0.1950 T22: 0.1148 REMARK 3 T33: -0.0832 T12: -0.0046 REMARK 3 T13: -0.0415 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 11.2876 L22: 6.0520 REMARK 3 L33: 33.1906 L12: -1.8586 REMARK 3 L13: -14.2363 L23: 4.0767 REMARK 3 S TENSOR REMARK 3 S11: -0.3592 S12: 0.2433 S13: -0.0106 REMARK 3 S21: 0.0059 S22: 0.0348 S23: -0.3855 REMARK 3 S31: 1.0656 S32: 0.5893 S33: 0.3244 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 292 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 45.2325 34.8271 -6.2774 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.0114 REMARK 3 T33: 0.0704 T12: -0.0079 REMARK 3 T13: -0.0676 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 18.4884 L22: 41.4696 REMARK 3 L33: 26.5601 L12: 3.2965 REMARK 3 L13: -6.4634 L23: -22.4744 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: 0.5862 S13: -1.6568 REMARK 3 S21: -1.1635 S22: -0.5247 S23: -1.1437 REMARK 3 S31: 1.9741 S32: 0.3866 S33: 0.4431 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 296 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 37.2022 45.7865 -4.2092 REMARK 3 T TENSOR REMARK 3 T11: 0.0193 T22: 0.0179 REMARK 3 T33: 0.1486 T12: 0.0703 REMARK 3 T13: 0.0464 T23: 0.1685 REMARK 3 L TENSOR REMARK 3 L11: 20.0822 L22: 18.8352 REMARK 3 L33: 15.9739 L12: -15.2647 REMARK 3 L13: -4.1267 L23: 9.2480 REMARK 3 S TENSOR REMARK 3 S11: -0.1907 S12: -0.4731 S13: -0.3919 REMARK 3 S21: 0.1081 S22: 0.4532 S23: 1.7313 REMARK 3 S31: -1.3653 S32: -0.8205 S33: -0.2626 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 302 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): 37.8438 46.2480 5.4828 REMARK 3 T TENSOR REMARK 3 T11: 0.0120 T22: -0.0058 REMARK 3 T33: -0.0183 T12: -0.0756 REMARK 3 T13: 0.1424 T23: -0.0754 REMARK 3 L TENSOR REMARK 3 L11: 13.9277 L22: 4.3199 REMARK 3 L33: 31.5429 L12: 2.0126 REMARK 3 L13: -1.8678 L23: -4.7800 REMARK 3 S TENSOR REMARK 3 S11: 1.3126 S12: -0.6131 S13: 1.1595 REMARK 3 S21: 0.5414 S22: -0.6956 S23: 0.5172 REMARK 3 S31: -2.0051 S32: -0.5136 S33: -0.6170 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 311 A 316 REMARK 3 ORIGIN FOR THE GROUP (A): 45.0215 43.2631 -1.8789 REMARK 3 T TENSOR REMARK 3 T11: -0.1078 T22: -0.0565 REMARK 3 T33: -0.0816 T12: -0.0713 REMARK 3 T13: -0.0244 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 7.5289 L22: 6.4777 REMARK 3 L33: 14.7538 L12: 1.6259 REMARK 3 L13: 1.0904 L23: -7.2763 REMARK 3 S TENSOR REMARK 3 S11: 0.2005 S12: 0.0148 S13: 0.4255 REMARK 3 S21: -0.0017 S22: 0.1211 S23: -0.0015 REMARK 3 S31: -0.3669 S32: -0.2977 S33: -0.3216 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 317 A 324 REMARK 3 ORIGIN FOR THE GROUP (A): 42.0065 29.9257 3.7613 REMARK 3 T TENSOR REMARK 3 T11: -0.1129 T22: -0.0536 REMARK 3 T33: 0.0494 T12: -0.0804 REMARK 3 T13: -0.0878 T23: 0.1252 REMARK 3 L TENSOR REMARK 3 L11: 3.5948 L22: 5.5188 REMARK 3 L33: 2.3606 L12: -3.1688 REMARK 3 L13: 1.4018 L23: -2.7986 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: -0.3193 S13: -0.5165 REMARK 3 S21: -0.3040 S22: 0.2269 S23: 0.7761 REMARK 3 S31: 0.1468 S32: -0.1337 S33: -0.2359 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 325 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): 43.8711 26.8197 -3.8301 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: -0.1131 REMARK 3 T33: 0.0274 T12: 0.0102 REMARK 3 T13: -0.1105 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 11.0597 L22: 1.4334 REMARK 3 L33: 13.4278 L12: 2.9161 REMARK 3 L13: 2.1821 L23: -2.3636 REMARK 3 S TENSOR REMARK 3 S11: 0.5738 S12: 0.4495 S13: -0.6282 REMARK 3 S21: -0.8902 S22: -0.1641 S23: -0.0378 REMARK 3 S31: 0.5187 S32: 0.2091 S33: -0.4097 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 331 A 337 REMARK 3 ORIGIN FOR THE GROUP (A): 35.4398 27.3004 -4.1427 REMARK 3 T TENSOR REMARK 3 T11: -0.0092 T22: -0.0729 REMARK 3 T33: 0.0202 T12: -0.0720 REMARK 3 T13: -0.1676 T23: 0.0834 REMARK 3 L TENSOR REMARK 3 L11: 19.2598 L22: 7.4191 REMARK 3 L33: 7.1542 L12: -8.5934 REMARK 3 L13: -6.9599 L23: 0.9340 REMARK 3 S TENSOR REMARK 3 S11: 0.3990 S12: 0.2931 S13: -1.0508 REMARK 3 S21: -0.7099 S22: -0.3414 S23: 0.5422 REMARK 3 S31: -0.1036 S32: -0.1217 S33: -0.0575 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 338 A 344 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8625 31.2525 1.7017 REMARK 3 T TENSOR REMARK 3 T11: 0.0750 T22: 0.0424 REMARK 3 T33: 0.0417 T12: -0.1048 REMARK 3 T13: -0.1483 T23: 0.0970 REMARK 3 L TENSOR REMARK 3 L11: 16.9316 L22: 2.0963 REMARK 3 L33: 31.9441 L12: 5.1544 REMARK 3 L13: -4.1418 L23: -5.2987 REMARK 3 S TENSOR REMARK 3 S11: 0.5146 S12: -0.5398 S13: 0.1269 REMARK 3 S21: -0.0790 S22: -0.1866 S23: 0.3126 REMARK 3 S31: -1.5096 S32: 0.1071 S33: -0.3281 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 345 A 354 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1388 37.6891 5.4030 REMARK 3 T TENSOR REMARK 3 T11: -0.1130 T22: 0.0079 REMARK 3 T33: -0.0602 T12: -0.0962 REMARK 3 T13: -0.0618 T23: 0.0693 REMARK 3 L TENSOR REMARK 3 L11: 4.4590 L22: 1.4815 REMARK 3 L33: 3.6421 L12: -0.1887 REMARK 3 L13: -2.9132 L23: -0.4509 REMARK 3 S TENSOR REMARK 3 S11: -0.0795 S12: -0.3624 S13: -0.2772 REMARK 3 S21: -0.1593 S22: 0.0891 S23: 0.1630 REMARK 3 S31: 0.0884 S32: -0.0782 S33: -0.0096 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 355 A 359 REMARK 3 ORIGIN FOR THE GROUP (A): 54.5328 48.5289 -9.1748 REMARK 3 T TENSOR REMARK 3 T11: 0.0320 T22: -0.1233 REMARK 3 T33: -0.0920 T12: -0.1329 REMARK 3 T13: 0.0148 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 4.1754 L22: 6.0376 REMARK 3 L33: 34.7648 L12: 2.0102 REMARK 3 L13: -4.9272 L23: -10.9103 REMARK 3 S TENSOR REMARK 3 S11: -0.1864 S12: 0.1417 S13: -0.1763 REMARK 3 S21: -0.3879 S22: 0.1448 S23: 0.0861 REMARK 3 S31: 0.5571 S32: 0.0159 S33: 0.0416 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2REY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044775. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12446 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 34.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 14.90 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : 0.46800 REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1L6O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M BIS-TRIS REMARK 280 PH 5.5, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.18000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.36000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.77000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.95000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 9.59000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 19.18000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 38.36000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.95000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 28.77000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 9.59000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 104.46600 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 60.31347 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -19.18000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 260 REMARK 465 MET A 261 REMARK 465 SER A 262 REMARK 465 LYS A 274 REMARK 465 ASN A 287 REMARK 465 GLU A 288 REMARK 465 ARG A 289 REMARK 465 GLY A 290 REMARK 465 ASP A 291 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 276 OD1 ND2 REMARK 470 SER A 286 OG REMARK 470 LYS A 301 CE NZ REMARK 470 ASP A 331 CG OD1 OD2 REMARK 470 LYS A 343 CE NZ REMARK 470 PRO A 344 CB CG CD REMARK 470 TRP A 355 CE3 CZ2 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 271 OD1 ASN A 271 11655 1.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 321 -118.77 49.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L6O RELATED DB: PDB REMARK 900 XENOPUS DISHEVELLED PDZ DOMAIN DBREF 2REY A 261 355 UNP O14641 DVL2_HUMAN 260 354 SEQADV 2REY SER A 260 UNP O14641 EXPRESSION TAG SEQADV 2REY GLU A 356 UNP O14641 EXPRESSION TAG SEQADV 2REY THR A 357 UNP O14641 EXPRESSION TAG SEQADV 2REY SER A 358 UNP O14641 EXPRESSION TAG SEQADV 2REY VAL A 359 UNP O14641 EXPRESSION TAG SEQRES 1 A 100 SER MET SER LEU ASN ILE ILE THR VAL THR LEU ASN MET SEQRES 2 A 100 GLU LYS TYR ASN PHE LEU GLY ILE SER ILE VAL GLY GLN SEQRES 3 A 100 SER ASN GLU ARG GLY ASP GLY GLY ILE TYR ILE GLY SER SEQRES 4 A 100 ILE MET LYS GLY GLY ALA VAL ALA ALA ASP GLY ARG ILE SEQRES 5 A 100 GLU PRO GLY ASP MET LEU LEU GLN VAL ASN ASP MET ASN SEQRES 6 A 100 PHE GLU ASN MET SER ASN ASP ASP ALA VAL ARG VAL LEU SEQRES 7 A 100 ARG ASP ILE VAL HIS LYS PRO GLY PRO ILE VAL LEU THR SEQRES 8 A 100 VAL ALA LYS CYS TRP GLU THR SER VAL FORMUL 2 HOH *42(H2 O) HELIX 1 1 ALA A 304 GLY A 309 1 6 HELIX 2 2 SER A 329 HIS A 342 1 14 SHEET 1 A 5 ILE A 265 LEU A 270 0 SHEET 2 A 5 ILE A 347 ALA A 352 -1 O LEU A 349 N VAL A 268 SHEET 3 A 5 MET A 316 VAL A 320 -1 N LEU A 318 O THR A 350 SHEET 4 A 5 ILE A 294 ILE A 299 -1 N ILE A 294 O LEU A 317 SHEET 5 A 5 ILE A 280 VAL A 283 -1 N VAL A 283 O TYR A 295 SHEET 1 B 4 ILE A 265 LEU A 270 0 SHEET 2 B 4 ILE A 347 ALA A 352 -1 O LEU A 349 N VAL A 268 SHEET 3 B 4 MET A 316 VAL A 320 -1 N LEU A 318 O THR A 350 SHEET 4 B 4 MET A 323 ASN A 324 -1 O MET A 323 N VAL A 320 CISPEP 1 GLY A 303 ALA A 304 0 5.96 CRYST1 69.644 69.644 57.540 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014359 0.008290 0.000000 0.00000 SCALE2 0.000000 0.016580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017379 0.00000