HEADER TRANSFERASE 27-SEP-07 2RF2 TITLE HIV REVERSE TRANSCRIPTASE IN COMPLEX WITH INHIBITOR 7E (NNRTI) COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H (EC 2.7.7.49) (EC COMPND 3 2.7.7.7) (EC 3.1.26.4) (P66 RT); COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: HIV-1 REVERSE TRANSCRIPTASE; COMPND 6 EC: 2.7.7.49; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H (EC 2.7.7.49) (EC COMPND 10 2.7.7.7) (EC 3.1.26.4) (P66 RT); COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: HIV-1 REVERSE TRANSCRIPTASE; COMPND 13 EC: 2.7.7.49; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIV-1 M:B_HXB2R; SOURCE 3 ORGANISM_TAXID: 11706; SOURCE 4 STRAIN: HXB2 ISOLATE; SOURCE 5 GENE: GAG-POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HIV-1 M:B_HXB2R; SOURCE 10 ORGANISM_TAXID: 11706; SOURCE 11 STRAIN: HXB2 ISOLATE; SOURCE 12 GENE: GAG-POL; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV-1 REVERS TRANSCRIPTASE, AIS, NON-NUCLEOSIDE INHIBITION, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, AIDS, ASPARTYL PROTEASE, CAPSID MATURATION, KEYWDS 3 CORE PROTEIN, CYTOPLASM, DNA INTEGRATION, DNA RECOMBINATION, DNA- KEYWDS 4 DIRECTED DNA POLYMERASE, ENDONUCLEASE, HOST-VIRUS INTERACTION, KEYWDS 5 HYDROLASE, LIPOPROTEIN, MAGNESIUM, MEMBRANE, METAL-BINDING, KEYWDS 6 MULTIFUNCTIONAL ENZYME, MYRISTATE, NUCLEASE, NUCLEUS, KEYWDS 7 PHOSPHORYLATION, PROTEASE, RNA-BINDING, RNA-DIRECTED DNA POLYMERASE, KEYWDS 8 VIRAL NUCLEOPROTEIN, VIRION, ZINC, ZINC-FINGER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.YAN,S.PRASAD REVDAT 4 30-AUG-23 2RF2 1 REMARK SEQADV REVDAT 3 24-FEB-09 2RF2 1 VERSN REVDAT 2 12-FEB-08 2RF2 1 JRNL REVDAT 1 01-JAN-08 2RF2 0 JRNL AUTH Z.ZHAO,S.E.WOLKENBERG,M.LU,V.MUNSHI,G.MOYER,M.FENG, JRNL AUTH 2 A.V.CARELLA,L.T.ECTO,L.J.GABRYELSKI,M.T.LAI,S.G.PRASAD, JRNL AUTH 3 Y.YAN,G.B.MCGAUGHEY,M.D.MILLER,C.W.LINDSLEY,G.D.HARTMAN, JRNL AUTH 4 J.P.VACCA,T.M.WILLIAMS JRNL TITL NOVEL INDOLE-3-SULFONAMIDES AS POTENT HIV NON-NUCLEOSIDE JRNL TITL 2 REVERSE TRANSCRIPTASE INHIBITORS (NNRTIS). JRNL REF BIOORG.MED.CHEM.LETT. V. 18 554 2008 JRNL REFN ISSN 0960-894X JRNL PMID 18083561 JRNL DOI 10.1016/J.BMCL.2007.11.085 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.1.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 57465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2916 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.53 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.17 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 8867 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2383 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8412 REMARK 3 BIN R VALUE (WORKING SET) : 0.2339 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.13 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 455 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7862 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50916 REMARK 3 B22 (A**2) : -0.01087 REMARK 3 B33 (A**2) : -0.49829 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8095 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 10935 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 1690 ; 0.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 225 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 1110 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 8095 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : 193 ; 5.000 ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.29 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000044779. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57711 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.64000 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1RTJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, PH 6.1, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.93000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.93000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.64500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.90500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.64500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.90500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.93000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 59.64500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.90500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.93000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 59.64500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.90500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 ASN A -1 REMARK 465 SER A 0 REMARK 465 LYS A 65 REMARK 465 LYS A 66 REMARK 465 ASP A 67 REMARK 465 LYS A 558 REMARK 465 VAL A 559 REMARK 465 LEU A 560 REMARK 465 MET B -2 REMARK 465 ASN B -1 REMARK 465 SER B 0 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 465 TRP B 229 REMARK 465 MET B 230 REMARK 465 MET B 357 REMARK 465 ARG B 358 REMARK 465 GLY B 359 REMARK 465 ALA B 360 REMARK 465 LEU B 429 REMARK 465 GLU B 430 REMARK 465 LYS B 431 REMARK 465 GLU B 432 REMARK 465 PRO B 433 REMARK 465 ILE B 434 REMARK 465 VAL B 435 REMARK 465 GLY B 436 REMARK 465 ALA B 437 REMARK 465 GLU B 438 REMARK 465 THR B 439 REMARK 465 PHE B 440 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 175 NZ LYS A 201 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 95 C - N - CA ANGL. DEV. = -9.4 DEGREES REMARK 500 PRO A 133 C - N - CA ANGL. DEV. = -11.3 DEGREES REMARK 500 PRO A 140 C - N - CD ANGL. DEV. = -18.1 DEGREES REMARK 500 PRO A 176 C - N - CD ANGL. DEV. = -15.3 DEGREES REMARK 500 PRO A 217 C - N - CD ANGL. DEV. = -14.7 DEGREES REMARK 500 PRO A 243 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO A 412 C - N - CA ANGL. DEV. = -10.8 DEGREES REMARK 500 PRO B 14 C - N - CA ANGL. DEV. = 13.1 DEGREES REMARK 500 PRO B 14 C - N - CD ANGL. DEV. = -43.5 DEGREES REMARK 500 PRO B 140 C - N - CA ANGL. DEV. = -10.2 DEGREES REMARK 500 PRO B 176 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 PRO B 176 C - N - CD ANGL. DEV. = -16.4 DEGREES REMARK 500 PRO B 272 C - N - CD ANGL. DEV. = -24.5 DEGREES REMARK 500 PRO B 421 C - N - CD ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 69 74.68 -115.26 REMARK 500 ALA A 114 -78.25 -20.04 REMARK 500 PHE A 116 1.16 -63.61 REMARK 500 ASN A 137 -14.96 56.84 REMARK 500 THR A 139 179.22 98.55 REMARK 500 PRO A 140 -131.42 -76.37 REMARK 500 ASN A 175 48.10 -148.56 REMARK 500 MET A 184 -115.03 59.16 REMARK 500 ILE A 195 -37.21 -36.13 REMARK 500 LYS A 220 -28.91 88.08 REMARK 500 PRO A 243 119.21 -39.71 REMARK 500 ILE A 270 -22.97 -141.61 REMARK 500 VAL A 276 -12.13 -141.91 REMARK 500 THR A 286 145.30 70.17 REMARK 500 LYS A 287 -147.62 -112.76 REMARK 500 GLU A 312 119.09 91.66 REMARK 500 PHE A 346 7.71 83.40 REMARK 500 ALA A 355 -39.32 -131.20 REMARK 500 ARG A 356 127.64 -10.53 REMARK 500 ASP A 443 149.85 -171.19 REMARK 500 LYS A 465 146.26 -171.59 REMARK 500 THR A 472 -169.69 -107.68 REMARK 500 LEU A 491 155.77 -43.59 REMARK 500 GLU A 492 117.99 57.77 REMARK 500 LYS A 540 -169.50 -107.06 REMARK 500 ILE A 542 111.65 -29.81 REMARK 500 ALA A 554 107.63 -43.58 REMARK 500 PRO B 14 113.66 16.82 REMARK 500 LYS B 65 107.97 77.02 REMARK 500 LYS B 66 115.59 -5.52 REMARK 500 ASN B 136 14.80 59.86 REMARK 500 MET B 184 -125.91 56.33 REMARK 500 LEU B 214 154.22 -43.92 REMARK 500 VAL B 241 -167.70 -25.32 REMARK 500 GLN B 242 42.31 158.68 REMARK 500 PRO B 243 -162.36 -48.14 REMARK 500 SER B 251 100.22 63.75 REMARK 500 GLN B 269 -35.84 93.32 REMARK 500 LEU B 283 77.68 -107.40 REMARK 500 LEU B 295 99.38 -68.08 REMARK 500 HIS B 315 111.00 79.79 REMARK 500 PHE B 346 -13.52 87.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRX A 561 DBREF 2RF2 A 1 560 UNP P04585 POL_HV1H2 588 1147 DBREF 2RF2 B 1 440 UNP P04585 POL_HV1H2 588 1027 SEQADV 2RF2 MET A -2 UNP P04585 EXPRESSION TAG SEQADV 2RF2 ASN A -1 UNP P04585 EXPRESSION TAG SEQADV 2RF2 SER A 0 UNP P04585 EXPRESSION TAG SEQADV 2RF2 MET B -2 UNP P04585 EXPRESSION TAG SEQADV 2RF2 ASN B -1 UNP P04585 EXPRESSION TAG SEQADV 2RF2 SER B 0 UNP P04585 EXPRESSION TAG SEQRES 1 A 563 MET ASN SER PRO ILE SER PRO ILE GLU THR VAL PRO VAL SEQRES 2 A 563 LYS LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN SEQRES 3 A 563 TRP PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU SEQRES 4 A 563 ILE CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS SEQRES 5 A 563 ILE GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA SEQRES 6 A 563 ILE LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL SEQRES 7 A 563 ASP PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP SEQRES 8 A 563 GLU VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS SEQRES 9 A 563 LYS LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA SEQRES 10 A 563 TYR PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR SEQRES 11 A 563 THR ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO SEQRES 12 A 563 GLY ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP SEQRES 13 A 563 LYS GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS SEQRES 14 A 563 ILE LEU GLU PRO PHE ARG LYS GLN ASN PRO ASP ILE VAL SEQRES 15 A 563 ILE TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP SEQRES 16 A 563 LEU GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU SEQRES 17 A 563 ARG GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP SEQRES 18 A 563 LYS LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY SEQRES 19 A 563 TYR GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE SEQRES 20 A 563 VAL LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE SEQRES 21 A 563 GLN LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE SEQRES 22 A 563 TYR PRO GLY ILE LYS VAL ARG GLN LEU CYS LYS LEU LEU SEQRES 23 A 563 ARG GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR SEQRES 24 A 563 GLU GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE SEQRES 25 A 563 LEU LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER SEQRES 26 A 563 LYS ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY SEQRES 27 A 563 GLN TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN SEQRES 28 A 563 LEU LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS SEQRES 29 A 563 THR ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS SEQRES 30 A 563 ILE THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO SEQRES 31 A 563 LYS PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR SEQRES 32 A 563 TRP TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU SEQRES 33 A 563 TRP GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP SEQRES 34 A 563 TYR GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR SEQRES 35 A 563 PHE TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU SEQRES 36 A 563 GLY LYS ALA GLY TYR VAL THR ASN ARG GLY ARG GLN LYS SEQRES 37 A 563 VAL VAL THR LEU THR ASP THR THR ASN GLN LYS THR GLU SEQRES 38 A 563 LEU GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU SEQRES 39 A 563 GLU VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY SEQRES 40 A 563 ILE ILE GLN ALA GLN PRO ASP GLN SER GLU SER GLU LEU SEQRES 41 A 563 VAL ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS SEQRES 42 A 563 VAL TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY SEQRES 43 A 563 GLY ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY ILE SEQRES 44 A 563 ARG LYS VAL LEU SEQRES 1 B 443 MET ASN SER PRO ILE SER PRO ILE GLU THR VAL PRO VAL SEQRES 2 B 443 LYS LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN SEQRES 3 B 443 TRP PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU SEQRES 4 B 443 ILE CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS SEQRES 5 B 443 ILE GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA SEQRES 6 B 443 ILE LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL SEQRES 7 B 443 ASP PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP SEQRES 8 B 443 GLU VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS SEQRES 9 B 443 LYS LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA SEQRES 10 B 443 TYR PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR SEQRES 11 B 443 THR ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO SEQRES 12 B 443 GLY ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP SEQRES 13 B 443 LYS GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS SEQRES 14 B 443 ILE LEU GLU PRO PHE ARG LYS GLN ASN PRO ASP ILE VAL SEQRES 15 B 443 ILE TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP SEQRES 16 B 443 LEU GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU SEQRES 17 B 443 ARG GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP SEQRES 18 B 443 LYS LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY SEQRES 19 B 443 TYR GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE SEQRES 20 B 443 VAL LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE SEQRES 21 B 443 GLN LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE SEQRES 22 B 443 TYR PRO GLY ILE LYS VAL ARG GLN LEU CYS LYS LEU LEU SEQRES 23 B 443 ARG GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR SEQRES 24 B 443 GLU GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE SEQRES 25 B 443 LEU LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER SEQRES 26 B 443 LYS ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY SEQRES 27 B 443 GLN TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN SEQRES 28 B 443 LEU LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS SEQRES 29 B 443 THR ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS SEQRES 30 B 443 ILE THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO SEQRES 31 B 443 LYS PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR SEQRES 32 B 443 TRP TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU SEQRES 33 B 443 TRP GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP SEQRES 34 B 443 TYR GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR SEQRES 35 B 443 PHE HET MRX A 561 21 HETNAM MRX 5-BROMO-3-(PYRROLIDIN-1-YLSULFONYL)-1H-INDOLE-2- HETNAM 2 MRX CARBOXAMIDE FORMUL 3 MRX C13 H14 BR N3 O3 S FORMUL 4 HOH *710(H2 O) HELIX 1 1 THR A 27 LYS A 43 1 17 HELIX 2 2 PHE A 77 THR A 84 1 8 HELIX 3 3 HIS A 96 LEU A 100 5 5 HELIX 4 4 ALA A 114 VAL A 118 5 5 HELIX 5 5 PHE A 124 ALA A 129 5 6 HELIX 6 6 ILE A 135 GLU A 138 5 4 HELIX 7 7 GLY A 155 ASN A 175 1 21 HELIX 8 8 GLU A 194 ARG A 211 1 18 HELIX 9 9 THR A 253 SER A 268 1 16 HELIX 10 10 VAL A 276 LEU A 282 1 7 HELIX 11 11 THR A 296 GLU A 297 1 2 HELIX 12 12 GLU A 298 LYS A 311 1 14 HELIX 13 13 ASN A 363 GLY A 384 1 22 HELIX 14 14 GLN A 394 TYR A 405 1 12 HELIX 15 15 THR A 473 ASP A 488 1 16 HELIX 16 16 SER A 499 ALA A 508 1 10 HELIX 17 17 SER A 515 LYS A 528 1 14 HELIX 18 18 ILE A 542 ALA A 554 1 13 HELIX 19 19 THR B 27 GLU B 44 1 18 HELIX 20 20 PHE B 77 ARG B 83 1 7 HELIX 21 21 THR B 84 VAL B 90 1 7 HELIX 22 22 GLY B 99 LYS B 103 5 5 HELIX 23 23 GLY B 112 VAL B 118 5 7 HELIX 24 24 PHE B 124 ALA B 129 5 6 HELIX 25 25 SER B 134 GLU B 138 5 5 HELIX 26 26 LYS B 154 ASN B 175 1 22 HELIX 27 27 GLU B 194 ARG B 211 1 18 HELIX 28 28 HIS B 235 TRP B 239 5 5 HELIX 29 29 THR B 253 SER B 268 1 16 HELIX 30 30 VAL B 276 LEU B 282 1 7 HELIX 31 31 THR B 296 GLU B 312 1 17 HELIX 32 32 ASN B 363 GLY B 384 1 22 HELIX 33 33 GLN B 394 TRP B 402 1 9 HELIX 34 34 THR B 403 TYR B 405 5 3 HELIX 35 35 PRO B 420 GLN B 428 1 9 SHEET 1 A 3 ILE A 47 LYS A 49 0 SHEET 2 A 3 GLY A 141 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 A 3 PHE A 130 PRO A 133 -1 N ILE A 132 O ILE A 142 SHEET 1 B 2 VAL A 60 ILE A 63 0 SHEET 2 B 2 ARG A 72 VAL A 75 -1 O ARG A 72 N ILE A 63 SHEET 1 C 3 SER A 105 ASP A 110 0 SHEET 2 C 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107 SHEET 3 C 3 VAL A 179 TYR A 183 -1 N VAL A 179 O GLY A 190 SHEET 1 D 3 PHE A 227 TRP A 229 0 SHEET 2 D 3 TYR A 232 LEU A 234 -1 O TYR A 232 N TRP A 229 SHEET 3 D 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 E 5 LYS A 347 TYR A 354 0 SHEET 2 E 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LEU A 349 SHEET 3 E 5 ILE A 326 GLY A 333 -1 N ILE A 326 O TYR A 342 SHEET 4 E 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 E 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 F 2 HIS A 361 THR A 362 0 SHEET 2 F 2 GLN A 512 SER A 513 -1 O GLN A 512 N THR A 362 SHEET 1 G 5 GLN A 464 LEU A 469 0 SHEET 2 G 5 GLY A 453 THR A 459 -1 N ALA A 455 O VAL A 467 SHEET 3 G 5 THR A 439 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 G 5 VAL A 493 THR A 497 1 O VAL A 496 N PHE A 440 SHEET 5 G 5 VAL A 531 TRP A 535 1 O ALA A 534 N THR A 497 SHEET 1 H 3 ILE B 47 LYS B 49 0 SHEET 2 H 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 H 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 I 2 VAL B 60 ILE B 63 0 SHEET 2 I 2 ARG B 72 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 J 4 VAL B 179 TYR B 183 0 SHEET 2 J 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 J 4 SER B 105 ASP B 110 -1 N LEU B 109 O LEU B 187 SHEET 4 J 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 K 5 ASN B 348 ALA B 355 0 SHEET 2 K 5 GLN B 336 TYR B 342 -1 N ILE B 341 O LYS B 350 SHEET 3 K 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 K 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327 SHEET 5 K 5 TRP B 414 PHE B 416 1 O GLU B 415 N LEU B 391 CISPEP 1 PRO A 225 PRO A 226 0 2.36 CISPEP 2 PRO A 420 PRO A 421 0 2.40 SITE 1 AC1 12 LEU A 100 LYS A 101 VAL A 106 VAL A 179 SITE 2 AC1 12 TYR A 181 TYR A 188 PHE A 227 LEU A 234 SITE 3 AC1 12 HIS A 235 PRO A 236 TYR A 318 HOH B 454 CRYST1 119.290 155.810 155.860 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008383 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006418 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006416 0.00000