HEADER RAS-BINDING DOMAIN 13-FEB-97 2RGF TITLE RBD OF RAL GUANOSINE-NUCLEOTIDE EXCHANGE FACTOR (PROTEIN), NMR, 10 TITLE 2 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RALGEF-RBD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HUMAN RALGEF GENE (RALGDS); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T3; SOURCE 10 EXPRESSION_SYSTEM_GENE: HUMAN RALGEF GENE (RALGDS) KEYWDS RAS-BINDING DOMAIN, RALGEF, RALGDS, RAS, RBD EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.GEYER,C.HERRMANN,A.WITTINGHOFER,H.R.KALBITZER REVDAT 4 27-OCT-21 2RGF 1 REMARK REVDAT 3 24-FEB-09 2RGF 1 VERSN REVDAT 2 24-JUN-98 2RGF 1 COMPND SHEET REVDAT 1 04-MAR-98 2RGF 0 JRNL AUTH M.GEYER,C.HERRMANN,S.WOHLGEMUTH,A.WITTINGHOFER,H.R.KALBITZER JRNL TITL STRUCTURE OF THE RAS-BINDING DOMAIN OF RALGEF AND JRNL TITL 2 IMPLICATIONS FOR RAS BINDING AND SIGNALLING. JRNL REF NAT.STRUCT.BIOL. V. 4 694 1997 JRNL REFN ISSN 1072-8368 JRNL PMID 9302994 JRNL DOI 10.1038/NSB0997-694 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.HERRMANN,G.HORN,M.SPAARGAREN,A.WITTINGHOFER REMARK 1 TITL DIFFERENTIAL INTERACTION OF THE RAS FAMILY GTP-BINDING REMARK 1 TITL 2 PROTEINS H-RAS, RAP1A, AND R-RAS WITH THE PUTATIVE EFFECTOR REMARK 1 TITL 3 MOLECULES RAF KINASE AND RAL-GUANINE NUCLEOTIDE EXCHANGE REMARK 1 TITL 4 FACTOR REMARK 1 REF J.BIOL.CHEM. V. 271 6794 1996 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.SPAARGAREN,J.R.BISCHOFF REMARK 1 TITL IDENTIFICATION OF THE GUANINE NUCLEOTIDE DISSOCIATION REMARK 1 TITL 2 STIMULATOR FOR RAL AS A PUTATIVE EFFECTOR MOLECULE OF R-RAS, REMARK 1 TITL 3 H-RAS, K-RAS, AND RAP REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 91 12609 1994 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 3 REMARK 1 AUTH F.HOFER,S.FIELDS,C.SCHNEIDER,G.S.MARTIN REMARK 1 TITL ACTIVATED RAS INTERACTS WITH THE RAL GUANINE NUCLEOTIDE REMARK 1 TITL 2 DISSOCIATION STIMULATOR REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 91 11089 1994 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 4 REMARK 1 AUTH C.F.ALBRIGHT,B.W.GIDDINGS,J.LIU,M.VITO,R.A.WEINBERG REMARK 1 TITL CHARACTERIZATION OF A GUANINE NUCLEOTIDE DISSOCIATION REMARK 1 TITL 2 STIMULATOR FOR A RAS-RELATED GTPASE REMARK 1 REF EMBO J. V. 12 339 1993 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RGF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178558. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H; 13C; 15N HETERONUCLEAR REMARK 210 EXPERIMENTS REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AMX; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AURELIA 2.0, X-PLOR 3.851 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 20 HZ3 LYS A 94 1.57 REMARK 500 H GLU A 60 O LYS A 94 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 5 108.52 -52.90 REMARK 500 1 ASN A 6 -62.47 -130.15 REMARK 500 1 ASP A 11 46.39 -106.62 REMARK 500 1 ASP A 20 69.76 -154.44 REMARK 500 1 VAL A 21 -80.86 -151.49 REMARK 500 1 GLN A 35 51.38 -109.77 REMARK 500 1 HIS A 49 49.64 -98.69 REMARK 500 1 GLU A 54 73.86 -115.65 REMARK 500 1 GLU A 57 48.46 -100.77 REMARK 500 1 ASP A 58 31.61 -153.76 REMARK 500 1 ASP A 68 62.46 -107.84 REMARK 500 1 ARG A 69 -64.80 -19.61 REMARK 500 1 PRO A 74 -171.35 -65.70 REMARK 500 1 ALA A 77 43.25 -81.04 REMARK 500 1 ALA A 87 -65.72 -152.15 REMARK 500 1 ARG A 96 95.79 -68.46 REMARK 500 2 TYR A 5 108.75 -51.71 REMARK 500 2 ASN A 6 -62.63 -130.73 REMARK 500 2 ASP A 20 64.02 -150.90 REMARK 500 2 VAL A 21 -79.66 -155.32 REMARK 500 2 HIS A 49 47.25 -109.15 REMARK 500 2 GLU A 57 44.70 -106.82 REMARK 500 2 ASP A 58 44.63 -152.73 REMARK 500 2 SER A 66 -65.47 -98.60 REMARK 500 2 ARG A 69 -65.92 -12.74 REMARK 500 2 PRO A 74 -177.02 -60.47 REMARK 500 2 ALA A 77 29.39 -77.95 REMARK 500 2 MET A 83 -45.84 -140.61 REMARK 500 2 SER A 85 94.19 -53.98 REMARK 500 2 THR A 86 -45.93 -139.45 REMARK 500 2 ALA A 87 -67.29 -148.35 REMARK 500 2 TYR A 89 46.45 -147.24 REMARK 500 3 TYR A 5 109.40 -50.02 REMARK 500 3 ASN A 6 -62.11 -136.70 REMARK 500 3 ASP A 11 57.50 -101.46 REMARK 500 3 ASP A 20 66.56 -155.24 REMARK 500 3 VAL A 21 -79.05 -148.57 REMARK 500 3 HIS A 49 54.38 -111.88 REMARK 500 3 ASN A 50 54.35 -69.58 REMARK 500 3 LEU A 65 -165.10 -128.61 REMARK 500 3 SER A 66 -64.42 -103.99 REMARK 500 3 ARG A 69 -66.05 -7.52 REMARK 500 3 PRO A 74 179.19 -58.10 REMARK 500 3 ALA A 87 -79.61 -148.37 REMARK 500 3 TYR A 89 46.38 -144.11 REMARK 500 4 TYR A 5 106.91 -51.99 REMARK 500 4 ASN A 6 -61.80 -126.62 REMARK 500 4 ASP A 20 69.63 -154.22 REMARK 500 4 VAL A 21 -80.27 -148.34 REMARK 500 4 HIS A 49 48.34 -102.25 REMARK 500 REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2RGF A 1 97 UNP Q12967 GNDS_HUMAN 202 298 SEQRES 1 A 97 ALA LEU PRO LEU TYR ASN GLN GLN VAL GLY ASP CYS CYS SEQRES 2 A 97 ILE ILE ARG VAL SER LEU ASP VAL ASP ASN GLY ASN MET SEQRES 3 A 97 TYR LYS SER ILE LEU VAL THR SER GLN ASP LYS ALA PRO SEQRES 4 A 97 ALA VAL ILE ARG LYS ALA MET ASP LYS HIS ASN LEU GLU SEQRES 5 A 97 GLU GLU GLU PRO GLU ASP TYR GLU LEU LEU GLN ILE LEU SEQRES 6 A 97 SER ASP ASP ARG LYS LEU LYS ILE PRO GLU ASN ALA ASN SEQRES 7 A 97 VAL PHE TYR ALA MET ASN SER THR ALA ASN TYR ASP PHE SEQRES 8 A 97 VAL LEU LYS LYS ARG THR HELIX 1 1 ALA A 38 LYS A 48 1 11 HELIX 2 2 PHE A 80 MET A 83 1 4 SHEET 1 A 5 LYS A 28 THR A 33 0 SHEET 2 A 5 CYS A 12 LEU A 19 -1 N VAL A 17 O LYS A 28 SHEET 3 A 5 ASP A 90 LYS A 95 1 N PHE A 91 O ARG A 16 SHEET 4 A 5 TYR A 59 ILE A 64 -1 N ILE A 64 O ASP A 90 SHEET 5 A 5 LYS A 70 ILE A 73 -1 N ILE A 73 O LEU A 61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1