HEADER NUCLEAR PROTEIN 05-OCT-07 2RH0 TITLE CRYSTAL STRUCTURE OF NUDC DOMAIN-CONTAINING PROTEIN 2 (13542905) FROM TITLE 2 MUS MUSCULUS AT 1.95 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUDC DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 5-157; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: 13542905, NUDCD2, D11ERTD603E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS 13542905, NUDC DOMAIN-CONTAINING PROTEIN 2, NUCLEAR MOVEMENT PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 25-JAN-23 2RH0 1 REMARK SEQADV REVDAT 4 24-JUL-19 2RH0 1 REMARK LINK REVDAT 3 25-OCT-17 2RH0 1 REMARK REVDAT 2 24-FEB-09 2RH0 1 VERSN REVDAT 1 16-OCT-07 2RH0 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF NUDC DOMAIN-CONTAINING PROTEIN 2 JRNL TITL 2 (13542905) FROM MUS MUSCULUS AT 1.95 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 47101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2394 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3200 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.80000 REMARK 3 B13 (A**2) : 1.24000 REMARK 3 B23 (A**2) : 1.88000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.267 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4339 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2973 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5899 ; 1.610 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7262 ; 0.896 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 548 ; 5.110 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;41.194 ;25.024 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 753 ;14.272 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;13.768 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 645 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4847 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 851 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 780 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3062 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2081 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2369 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 276 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.116 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.276 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2914 ; 2.690 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1080 ; 0.295 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4294 ; 3.508 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1899 ; 5.490 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1593 ; 7.946 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 137 2 REMARK 3 1 B 6 B 137 2 REMARK 3 1 C 6 C 136 2 REMARK 3 1 D 6 D 137 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 759 ; 0.090 ; 0.200 REMARK 3 TIGHT POSITIONAL 1 B (A): 759 ; 0.100 ; 0.000 REMARK 3 TIGHT POSITIONAL 1 C (A): 759 ; 0.100 ; 0.000 REMARK 3 TIGHT POSITIONAL 1 D (A): 759 ; 0.100 ; 0.000 REMARK 3 MEDIUM POSITIONAL 1 A (A): 920 ; 0.300 ; 1.000 REMARK 3 MEDIUM POSITIONAL 1 B (A): 920 ; 0.300 ; 0.000 REMARK 3 MEDIUM POSITIONAL 1 C (A): 920 ; 0.280 ; 0.000 REMARK 3 MEDIUM POSITIONAL 1 D (A): 920 ; 0.330 ; 0.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 759 ; 0.150 ; 0.500 REMARK 3 TIGHT THERMAL 1 B (A**2): 759 ; 0.170 ; 0.000 REMARK 3 TIGHT THERMAL 1 C (A**2): 759 ; 0.160 ; 0.000 REMARK 3 TIGHT THERMAL 1 D (A**2): 759 ; 0.160 ; 0.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 920 ; 0.130 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 920 ; 0.130 ; 0.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 920 ; 0.130 ; 0.000 REMARK 3 MEDIUM THERMAL 1 D (A**2): 920 ; 0.130 ; 0.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. EDO FROM THE CRYO SOLUTION WERE MODELED. REMARK 4 REMARK 4 2RH0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47221 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 29.148 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 3.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.60700 REMARK 200 R SYM FOR SHELL (I) : 0.60700 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M NANO3, 20.0% PEG 3350, REMARK 280 NO BUFFER PH 6.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10220 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10090 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 4 REMARK 465 GLY A 138 REMARK 465 ALA A 139 REMARK 465 GLU A 140 REMARK 465 ILE A 141 REMARK 465 SER A 142 REMARK 465 GLY A 143 REMARK 465 ASN A 144 REMARK 465 TYR A 145 REMARK 465 THR A 146 REMARK 465 LYS A 147 REMARK 465 GLY A 148 REMARK 465 GLY A 149 REMARK 465 PRO A 150 REMARK 465 ASP A 151 REMARK 465 PHE A 152 REMARK 465 SER A 153 REMARK 465 ASN A 154 REMARK 465 LEU A 155 REMARK 465 GLY A 156 REMARK 465 ASN A 157 REMARK 465 ASP A 158 REMARK 465 GLY A 159 REMARK 465 THR A 160 REMARK 465 GLY B 4 REMARK 465 PHE B 5 REMARK 465 GLY B 138 REMARK 465 ALA B 139 REMARK 465 GLU B 140 REMARK 465 ILE B 141 REMARK 465 SER B 142 REMARK 465 GLY B 143 REMARK 465 ASN B 144 REMARK 465 TYR B 145 REMARK 465 THR B 146 REMARK 465 LYS B 147 REMARK 465 GLY B 148 REMARK 465 GLY B 149 REMARK 465 PRO B 150 REMARK 465 ASP B 151 REMARK 465 PHE B 152 REMARK 465 SER B 153 REMARK 465 ASN B 154 REMARK 465 LEU B 155 REMARK 465 GLY B 156 REMARK 465 ASN B 157 REMARK 465 ASP B 158 REMARK 465 GLY B 159 REMARK 465 THR B 160 REMARK 465 GLY C 4 REMARK 465 PHE C 5 REMARK 465 SER C 137 REMARK 465 GLY C 138 REMARK 465 ALA C 139 REMARK 465 GLU C 140 REMARK 465 ILE C 141 REMARK 465 SER C 142 REMARK 465 GLY C 143 REMARK 465 ASN C 144 REMARK 465 TYR C 145 REMARK 465 THR C 146 REMARK 465 LYS C 147 REMARK 465 GLY C 148 REMARK 465 GLY C 149 REMARK 465 PRO C 150 REMARK 465 ASP C 151 REMARK 465 PHE C 152 REMARK 465 SER C 153 REMARK 465 ASN C 154 REMARK 465 LEU C 155 REMARK 465 GLY C 156 REMARK 465 ASN C 157 REMARK 465 ASP C 158 REMARK 465 GLY C 159 REMARK 465 THR C 160 REMARK 465 GLY D 4 REMARK 465 PHE D 5 REMARK 465 GLY D 138 REMARK 465 ALA D 139 REMARK 465 GLU D 140 REMARK 465 ILE D 141 REMARK 465 SER D 142 REMARK 465 GLY D 143 REMARK 465 ASN D 144 REMARK 465 TYR D 145 REMARK 465 THR D 146 REMARK 465 LYS D 147 REMARK 465 GLY D 148 REMARK 465 GLY D 149 REMARK 465 PRO D 150 REMARK 465 ASP D 151 REMARK 465 PHE D 152 REMARK 465 SER D 153 REMARK 465 ASN D 154 REMARK 465 LEU D 155 REMARK 465 GLY D 156 REMARK 465 ASN D 157 REMARK 465 ASP D 158 REMARK 465 GLY D 159 REMARK 465 THR D 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 5 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 7 CD OE1 OE2 REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 82 CZ NH1 NH2 REMARK 470 ASP A 135 CG OD1 OD2 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 ARG B 8 NE CZ NH1 NH2 REMARK 470 ARG B 126 CD NE CZ NH1 NH2 REMARK 470 SER B 137 OG REMARK 470 GLU C 7 CG CD OE1 OE2 REMARK 470 ARG C 8 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 59 NE CZ NH1 NH2 REMARK 470 ARG C 82 CZ NH1 NH2 REMARK 470 ASP C 135 CG OD1 OD2 REMARK 470 PHE C 136 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 7 CG CD OE1 OE2 REMARK 470 ARG D 8 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 59 CZ NH1 NH2 REMARK 470 ARG D 82 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 98 49.57 -105.81 REMARK 500 PHE B 136 41.86 -106.73 REMARK 500 ASN C 98 48.34 -104.00 REMARK 500 ASN D 98 55.47 -99.03 REMARK 500 PHE D 136 47.50 -106.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 380417 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. REMARK 999 THE CONSTRUCT CONTAINS RESIDUES 5-157 OF THE TARGET SEQUENCE. REMARK 999 A C-TERMINAL FRAMESHIFT RESULTS IN SEQUENCE CHANGES FOR THE REMARK 999 LAST TWO RESIDUES OF THE TARGET SEQUENCE (E156G AND K157N) REMARK 999 AND THE PRESENCE OF THREE ADDITIONAL RESIDUES REMARK 999 (158D, 159G, 160T) AT THE C-TERMINUS. DBREF 2RH0 A 5 157 UNP Q9CQ48 NUDC2_MOUSE 5 157 DBREF 2RH0 B 5 157 UNP Q9CQ48 NUDC2_MOUSE 5 157 DBREF 2RH0 C 5 157 UNP Q9CQ48 NUDC2_MOUSE 5 157 DBREF 2RH0 D 5 157 UNP Q9CQ48 NUDC2_MOUSE 5 157 SEQADV 2RH0 GLY A 4 UNP Q9CQ48 EXPRESSION TAG SEQADV 2RH0 GLY A 156 UNP Q9CQ48 GLU 156 SEE REMARK 999 SEQADV 2RH0 ASN A 157 UNP Q9CQ48 LYS 157 SEE REMARK 999 SEQADV 2RH0 ASP A 158 UNP Q9CQ48 SEE REMARK 999 SEQADV 2RH0 GLY A 159 UNP Q9CQ48 SEE REMARK 999 SEQADV 2RH0 THR A 160 UNP Q9CQ48 SEE REMARK 999 SEQADV 2RH0 GLY B 4 UNP Q9CQ48 EXPRESSION TAG SEQADV 2RH0 GLY B 156 UNP Q9CQ48 GLU 156 SEE REMARK 999 SEQADV 2RH0 ASN B 157 UNP Q9CQ48 LYS 157 SEE REMARK 999 SEQADV 2RH0 ASP B 158 UNP Q9CQ48 SEE REMARK 999 SEQADV 2RH0 GLY B 159 UNP Q9CQ48 SEE REMARK 999 SEQADV 2RH0 THR B 160 UNP Q9CQ48 SEE REMARK 999 SEQADV 2RH0 GLY C 4 UNP Q9CQ48 EXPRESSION TAG SEQADV 2RH0 GLY C 156 UNP Q9CQ48 GLU 156 SEE REMARK 999 SEQADV 2RH0 ASN C 157 UNP Q9CQ48 LYS 157 SEE REMARK 999 SEQADV 2RH0 ASP C 158 UNP Q9CQ48 SEE REMARK 999 SEQADV 2RH0 GLY C 159 UNP Q9CQ48 SEE REMARK 999 SEQADV 2RH0 THR C 160 UNP Q9CQ48 SEE REMARK 999 SEQADV 2RH0 GLY D 4 UNP Q9CQ48 EXPRESSION TAG SEQADV 2RH0 GLY D 156 UNP Q9CQ48 GLU 156 SEE REMARK 999 SEQADV 2RH0 ASN D 157 UNP Q9CQ48 LYS 157 SEE REMARK 999 SEQADV 2RH0 ASP D 158 UNP Q9CQ48 SEE REMARK 999 SEQADV 2RH0 GLY D 159 UNP Q9CQ48 SEE REMARK 999 SEQADV 2RH0 THR D 160 UNP Q9CQ48 SEE REMARK 999 SEQRES 1 A 157 GLY PHE GLU GLU ARG SER GLY VAL VAL PRO CYS GLY THR SEQRES 2 A 157 PRO TRP GLY GLN TRP TYR GLN THR LEU GLU GLU VAL PHE SEQRES 3 A 157 ILE GLU VAL GLN VAL PRO PRO GLY THR ARG ALA GLN ASP SEQRES 4 A 157 ILE GLN CYS GLY LEU GLN SER ARG HIS VAL ALA LEU ALA SEQRES 5 A 157 VAL GLY GLY ARG GLU ILE LEU LYS GLY LYS LEU PHE ASP SEQRES 6 A 157 SER THR ILE ALA ASP GLU GLY THR TRP THR LEU GLU ASP SEQRES 7 A 157 ARG LYS MSE VAL ARG ILE VAL LEU THR LYS THR LYS ARG SEQRES 8 A 157 ASP ALA ALA ASN CYS TRP THR SER LEU LEU GLU SER GLU SEQRES 9 A 157 TYR ALA ALA ASP PRO TRP VAL GLN ASP GLN MSE GLN ARG SEQRES 10 A 157 LYS LEU THR LEU GLU ARG PHE GLN LYS GLU ASN PRO GLY SEQRES 11 A 157 PHE ASP PHE SER GLY ALA GLU ILE SER GLY ASN TYR THR SEQRES 12 A 157 LYS GLY GLY PRO ASP PHE SER ASN LEU GLY ASN ASP GLY SEQRES 13 A 157 THR SEQRES 1 B 157 GLY PHE GLU GLU ARG SER GLY VAL VAL PRO CYS GLY THR SEQRES 2 B 157 PRO TRP GLY GLN TRP TYR GLN THR LEU GLU GLU VAL PHE SEQRES 3 B 157 ILE GLU VAL GLN VAL PRO PRO GLY THR ARG ALA GLN ASP SEQRES 4 B 157 ILE GLN CYS GLY LEU GLN SER ARG HIS VAL ALA LEU ALA SEQRES 5 B 157 VAL GLY GLY ARG GLU ILE LEU LYS GLY LYS LEU PHE ASP SEQRES 6 B 157 SER THR ILE ALA ASP GLU GLY THR TRP THR LEU GLU ASP SEQRES 7 B 157 ARG LYS MSE VAL ARG ILE VAL LEU THR LYS THR LYS ARG SEQRES 8 B 157 ASP ALA ALA ASN CYS TRP THR SER LEU LEU GLU SER GLU SEQRES 9 B 157 TYR ALA ALA ASP PRO TRP VAL GLN ASP GLN MSE GLN ARG SEQRES 10 B 157 LYS LEU THR LEU GLU ARG PHE GLN LYS GLU ASN PRO GLY SEQRES 11 B 157 PHE ASP PHE SER GLY ALA GLU ILE SER GLY ASN TYR THR SEQRES 12 B 157 LYS GLY GLY PRO ASP PHE SER ASN LEU GLY ASN ASP GLY SEQRES 13 B 157 THR SEQRES 1 C 157 GLY PHE GLU GLU ARG SER GLY VAL VAL PRO CYS GLY THR SEQRES 2 C 157 PRO TRP GLY GLN TRP TYR GLN THR LEU GLU GLU VAL PHE SEQRES 3 C 157 ILE GLU VAL GLN VAL PRO PRO GLY THR ARG ALA GLN ASP SEQRES 4 C 157 ILE GLN CYS GLY LEU GLN SER ARG HIS VAL ALA LEU ALA SEQRES 5 C 157 VAL GLY GLY ARG GLU ILE LEU LYS GLY LYS LEU PHE ASP SEQRES 6 C 157 SER THR ILE ALA ASP GLU GLY THR TRP THR LEU GLU ASP SEQRES 7 C 157 ARG LYS MSE VAL ARG ILE VAL LEU THR LYS THR LYS ARG SEQRES 8 C 157 ASP ALA ALA ASN CYS TRP THR SER LEU LEU GLU SER GLU SEQRES 9 C 157 TYR ALA ALA ASP PRO TRP VAL GLN ASP GLN MSE GLN ARG SEQRES 10 C 157 LYS LEU THR LEU GLU ARG PHE GLN LYS GLU ASN PRO GLY SEQRES 11 C 157 PHE ASP PHE SER GLY ALA GLU ILE SER GLY ASN TYR THR SEQRES 12 C 157 LYS GLY GLY PRO ASP PHE SER ASN LEU GLY ASN ASP GLY SEQRES 13 C 157 THR SEQRES 1 D 157 GLY PHE GLU GLU ARG SER GLY VAL VAL PRO CYS GLY THR SEQRES 2 D 157 PRO TRP GLY GLN TRP TYR GLN THR LEU GLU GLU VAL PHE SEQRES 3 D 157 ILE GLU VAL GLN VAL PRO PRO GLY THR ARG ALA GLN ASP SEQRES 4 D 157 ILE GLN CYS GLY LEU GLN SER ARG HIS VAL ALA LEU ALA SEQRES 5 D 157 VAL GLY GLY ARG GLU ILE LEU LYS GLY LYS LEU PHE ASP SEQRES 6 D 157 SER THR ILE ALA ASP GLU GLY THR TRP THR LEU GLU ASP SEQRES 7 D 157 ARG LYS MSE VAL ARG ILE VAL LEU THR LYS THR LYS ARG SEQRES 8 D 157 ASP ALA ALA ASN CYS TRP THR SER LEU LEU GLU SER GLU SEQRES 9 D 157 TYR ALA ALA ASP PRO TRP VAL GLN ASP GLN MSE GLN ARG SEQRES 10 D 157 LYS LEU THR LEU GLU ARG PHE GLN LYS GLU ASN PRO GLY SEQRES 11 D 157 PHE ASP PHE SER GLY ALA GLU ILE SER GLY ASN TYR THR SEQRES 12 D 157 LYS GLY GLY PRO ASP PHE SER ASN LEU GLY ASN ASP GLY SEQRES 13 D 157 THR MODRES 2RH0 MSE A 84 MET SELENOMETHIONINE MODRES 2RH0 MSE A 118 MET SELENOMETHIONINE MODRES 2RH0 MSE B 84 MET SELENOMETHIONINE MODRES 2RH0 MSE B 118 MET SELENOMETHIONINE MODRES 2RH0 MSE C 84 MET SELENOMETHIONINE MODRES 2RH0 MSE C 118 MET SELENOMETHIONINE MODRES 2RH0 MSE D 84 MET SELENOMETHIONINE MODRES 2RH0 MSE D 118 MET SELENOMETHIONINE HET MSE A 84 8 HET MSE A 118 8 HET MSE B 84 8 HET MSE B 118 8 HET MSE C 84 8 HET MSE C 118 8 HET MSE D 84 8 HET MSE D 118 8 HET EDO B 201 4 HET EDO C 201 4 HET EDO D 201 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *402(H2 O) HELIX 1 1 PHE A 5 SER A 9 5 5 HELIX 2 2 ARG A 39 GLN A 41 5 3 HELIX 3 3 ILE A 71 GLY A 75 5 5 HELIX 4 4 ASP A 111 ASN A 131 1 21 HELIX 5 5 ARG B 39 GLN B 41 5 3 HELIX 6 6 ILE B 71 GLY B 75 5 5 HELIX 7 7 ASP B 111 ASN B 131 1 21 HELIX 8 8 ARG C 39 GLN C 41 5 3 HELIX 9 9 ILE C 71 GLY C 75 5 5 HELIX 10 10 ASP C 111 ASN C 131 1 21 HELIX 11 11 ARG D 39 GLN D 41 5 3 HELIX 12 12 ILE D 71 GLY D 75 5 5 HELIX 13 13 ASP D 111 ASN D 131 1 21 SHEET 1 A 5 CYS A 14 GLY A 15 0 SHEET 2 A 5 GLY A 19 GLN A 23 -1 O TRP A 21 N CYS A 14 SHEET 3 A 5 GLU A 27 GLN A 33 -1 O GLU A 31 N GLN A 20 SHEET 4 A 5 MSE B 84 THR B 90 -1 O ILE B 87 N ILE A 30 SHEET 5 A 5 THR A 76 GLU A 80 -1 N GLU A 80 O MSE B 84 SHEET 1 B 3 ILE A 43 LEU A 47 0 SHEET 2 B 3 HIS A 51 VAL A 56 -1 O ALA A 55 N GLN A 44 SHEET 3 B 3 ARG A 59 LYS A 65 -1 O ILE A 61 N LEU A 54 SHEET 1 C 5 CYS B 14 THR B 16 0 SHEET 2 C 5 GLY B 19 GLN B 23 -1 O TRP B 21 N CYS B 14 SHEET 3 C 5 GLU B 27 GLN B 33 -1 O PHE B 29 N TYR B 22 SHEET 4 C 5 MSE A 84 THR A 90 -1 N VAL A 85 O VAL B 32 SHEET 5 C 5 THR B 76 GLU B 80 -1 O GLU B 80 N MSE A 84 SHEET 1 D 2 SER A 102 LEU A 104 0 SHEET 2 D 2 GLU A 107 ALA A 109 -1 O GLU A 107 N LEU A 104 SHEET 1 E 3 ILE B 43 LEU B 47 0 SHEET 2 E 3 HIS B 51 VAL B 56 -1 O ALA B 55 N GLN B 44 SHEET 3 E 3 ARG B 59 LYS B 65 -1 O LEU B 62 N LEU B 54 SHEET 1 F 2 SER B 102 LEU B 104 0 SHEET 2 F 2 GLU B 107 ALA B 109 -1 O GLU B 107 N LEU B 104 SHEET 1 G 5 CYS C 14 THR C 16 0 SHEET 2 G 5 GLY C 19 GLN C 23 -1 O GLY C 19 N THR C 16 SHEET 3 G 5 GLU C 27 GLN C 33 -1 O PHE C 29 N TYR C 22 SHEET 4 G 5 MSE D 84 THR D 90 -1 O LEU D 89 N VAL C 28 SHEET 5 G 5 THR C 76 GLU C 80 -1 N GLU C 80 O MSE D 84 SHEET 1 H 3 ILE C 43 GLN C 48 0 SHEET 2 H 3 HIS C 51 VAL C 56 -1 O HIS C 51 N GLN C 48 SHEET 3 H 3 ARG C 59 LYS C 65 -1 O ILE C 61 N LEU C 54 SHEET 1 I 5 CYS D 14 THR D 16 0 SHEET 2 I 5 GLY D 19 GLN D 23 -1 O GLY D 19 N THR D 16 SHEET 3 I 5 GLU D 27 GLN D 33 -1 O PHE D 29 N TYR D 22 SHEET 4 I 5 MSE C 84 THR C 90 -1 N LEU C 89 O VAL D 28 SHEET 5 I 5 THR D 76 GLU D 80 -1 O GLU D 80 N MSE C 84 SHEET 1 J 2 SER C 102 LEU C 104 0 SHEET 2 J 2 GLU C 107 ALA C 109 -1 O GLU C 107 N LEU C 104 SHEET 1 K 3 ILE D 43 GLN D 48 0 SHEET 2 K 3 HIS D 51 VAL D 56 -1 O HIS D 51 N GLN D 48 SHEET 3 K 3 ARG D 59 LYS D 65 -1 O GLY D 64 N VAL D 52 SHEET 1 L 2 SER D 102 LEU D 104 0 SHEET 2 L 2 GLU D 107 ALA D 109 -1 O GLU D 107 N LEU D 104 LINK C LYS A 83 N MSE A 84 1555 1555 1.33 LINK C MSE A 84 N VAL A 85 1555 1555 1.33 LINK C GLN A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N GLN A 119 1555 1555 1.33 LINK C LYS B 83 N MSE B 84 1555 1555 1.33 LINK C MSE B 84 N VAL B 85 1555 1555 1.32 LINK C GLN B 117 N MSE B 118 1555 1555 1.35 LINK C MSE B 118 N GLN B 119 1555 1555 1.33 LINK C LYS C 83 N MSE C 84 1555 1555 1.33 LINK C MSE C 84 N VAL C 85 1555 1555 1.34 LINK C GLN C 117 N MSE C 118 1555 1555 1.33 LINK C MSE C 118 N GLN C 119 1555 1555 1.33 LINK C LYS D 83 N MSE D 84 1555 1555 1.32 LINK C MSE D 84 N VAL D 85 1555 1555 1.33 LINK C GLN D 117 N MSE D 118 1555 1555 1.34 LINK C MSE D 118 N GLN D 119 1555 1555 1.33 SITE 1 AC1 4 GLN A 20 VAL B 11 GLN B 20 HOH B 220 SITE 1 AC2 4 CYS C 45 GLY C 46 LEU C 47 TRP C 77 SITE 1 AC3 4 CYS D 45 GLY D 46 LEU D 47 TRP D 77 CRYST1 44.568 64.504 64.423 74.51 81.06 81.22 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022438 -0.003466 -0.002753 0.00000 SCALE2 0.000000 0.015687 -0.004038 0.00000 SCALE3 0.000000 0.000000 0.016225 0.00000