HEADER NUCLEOTIDE BINDING PROTEIN 09-OCT-07 2RHD TITLE CRYSTAL STRUCTURE OF CRYPTOSPORIDIUM PARVUM SMALL GTPASE RAB1A COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL GTP BINDING PROTEIN RAB1A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-174; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOSPORIDIUM PARVUM; SOURCE 3 ORGANISM_TAXID: 5807; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA-R3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P15-TEV-LIC DERIVED FROM PET15 KEYWDS GTPASE, RAB1A, CRYPTOSPORIDIUM PARVUM, SGC, IN SITU, PROTEOLYSIS, KEYWDS 2 GTP-BINDING, NUCLEOTIDE-BINDING, NUCLEOTIDE BINDING PROTEIN, KEYWDS 3 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,X.XU,J.LEW,Y.H.LIN,C.KHUU,X.SUN,W.QIU,I.KOZIERADZKI, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,M.SUNDSTROM,A.BOCHKAREV,R.HUI, AUTHOR 3 D.SUKUMAR,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 30-AUG-23 2RHD 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2RHD 1 VERSN REVDAT 1 23-OCT-07 2RHD 0 JRNL AUTH A.DONG,X.XU,J.LEW,Y.H.LIN,C.KHUU,X.SUN,W.QIU,I.KOZIERADZKI, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,M.SUNDSTROM, JRNL AUTH 3 A.BOCHKAREV,R.HUI,D.SUKUMAR JRNL TITL CRYSTAL STRUCTURE OF CRYPTOSPORIDIUM PARVUM SMALL GTPASE JRNL TITL 2 RAB1A. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 18186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 601 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1306 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : -1.52000 REMARK 3 B12 (A**2) : 0.51000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.930 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1347 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1826 ; 1.155 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 162 ; 5.462 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;34.525 ;24.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 231 ;12.926 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;10.955 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 207 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 992 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 586 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 925 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 122 ; 0.113 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.196 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.126 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 835 ; 0.793 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1301 ; 1.400 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 604 ; 2.054 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 525 ; 3.104 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. PROGRAM COOT 0.1.2 HAS ALSO BEEN USED IN REFINEMENT. REMARK 4 REMARK 4 2RHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18805 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.32100 REMARK 200 R SYM FOR SHELL (I) : 0.32100 REMARK 200 FOR SHELL : 4.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2F9L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2, 20% PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A1002 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3801 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3831 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3860 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3863 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 MET A 2 REMARK 465 GLN A 68 REMARK 465 GLU A 69 REMARK 465 ARG A 70 REMARK 465 PHE A 71 REMARK 465 ARG A 72 REMARK 465 THR A 73 REMARK 465 ILE A 74 REMARK 465 THR A 75 REMARK 465 SER A 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 15 CD1 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 LYS A 129 CE NZ REMARK 470 LYS A 172 CD CE NZ REMARK 470 GLN A 175 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 54 -97.43 53.77 REMARK 500 ALA A 156 -4.11 78.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 23 OG REMARK 620 2 GDP A3800 O3B 88.0 REMARK 620 3 HOH A3808 O 92.3 95.8 REMARK 620 4 HOH A3809 O 87.6 84.7 179.5 REMARK 620 5 HOH A3834 O 174.6 89.9 82.9 97.1 REMARK 620 6 HOH A3861 O 82.9 170.6 87.1 92.4 99.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 95 OD2 REMARK 620 2 HOH A3806 O 76.6 REMARK 620 3 HOH A3831 O 124.2 71.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 95 OD1 REMARK 620 2 HOH A3816 O 98.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 3800 DBREF 2RHD A 2 175 UNP Q7YYW6 Q7YYW6_CRYPV 1 174 SEQADV 2RHD GLY A 1 UNP Q7YYW6 EXPRESSION TAG SEQRES 1 A 175 GLY MET ASN PRO GLU TYR ASP TYR LEU PHE LYS LEU LEU SEQRES 2 A 175 LEU ILE GLY ASP SER GLY VAL GLY LYS SER CYS LEU LEU SEQRES 3 A 175 LEU ARG PHE ALA ASP ASP THR TYR THR ASP SER TYR ILE SEQRES 4 A 175 SER THR ILE GLY VAL ASP PHE LYS ILE ARG THR ILE SER SEQRES 5 A 175 LEU GLU ASN LYS THR VAL LYS LEU GLN ILE TRP ASP THR SEQRES 6 A 175 ALA GLY GLN GLU ARG PHE ARG THR ILE THR SER SER TYR SEQRES 7 A 175 TYR ARG GLY ALA HIS GLY ILE ILE ILE VAL TYR ASP VAL SEQRES 8 A 175 THR ASP ARG ASP SER PHE ASP ASN VAL LYS GLN TRP ILE SEQRES 9 A 175 GLN GLU ILE ASP ARG TYR ALA MET GLU ASN VAL ASN LYS SEQRES 10 A 175 LEU LEU VAL GLY ASN LYS CYS ASP LEU VAL SER LYS ARG SEQRES 11 A 175 VAL VAL THR SER ASP GLU GLY ARG GLU LEU ALA ASP SER SEQRES 12 A 175 HIS GLY ILE LYS PHE ILE GLU THR SER ALA LYS ASN ALA SEQRES 13 A 175 TYR ASN VAL GLU GLN ALA PHE HIS THR MET ALA GLY GLU SEQRES 14 A 175 ILE LYS LYS ARG VAL GLN HET MG A1001 1 HET MG A1002 1 HET MG A1003 1 HET GDP A3800 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 MG 3(MG 2+) FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 HOH *182(H2 O) HELIX 1 1 GLY A 21 ASP A 32 1 12 HELIX 2 2 ASP A 93 ASN A 99 1 7 HELIX 3 3 ASN A 99 ALA A 111 1 13 HELIX 4 4 LEU A 126 ARG A 130 5 5 HELIX 5 5 THR A 133 HIS A 144 1 12 HELIX 6 6 ASN A 158 GLN A 175 1 18 SHEET 1 A 6 LYS A 47 LEU A 53 0 SHEET 2 A 6 LYS A 56 TRP A 63 -1 O VAL A 58 N ILE A 51 SHEET 3 A 6 TYR A 8 ILE A 15 1 N TYR A 8 O LYS A 59 SHEET 4 A 6 GLY A 84 ASP A 90 1 O VAL A 88 N ILE A 15 SHEET 5 A 6 ASN A 116 ASN A 122 1 O ASN A 122 N TYR A 89 SHEET 6 A 6 LYS A 147 GLU A 150 1 O LYS A 147 N LEU A 119 LINK OG SER A 23 MG MG A1001 1555 1555 2.36 LINK OD2 ASP A 95 MG MG A1002 1555 1555 2.44 LINK OD1 ASP A 95 MG MG A1003 1555 1555 2.41 LINK MG MG A1001 O3B GDP A3800 1555 1555 2.23 LINK MG MG A1001 O HOH A3808 1555 1555 2.35 LINK MG MG A1001 O HOH A3809 1555 1555 2.29 LINK MG MG A1001 O HOH A3834 1555 1555 2.27 LINK MG MG A1001 O HOH A3861 1555 1555 2.31 LINK MG MG A1002 O HOH A3806 1555 1555 2.40 LINK MG MG A1002 O HOH A3831 1555 1555 2.43 LINK MG MG A1003 O HOH A3816 1555 1555 2.29 SITE 1 AC1 6 SER A 23 GDP A3800 HOH A3808 HOH A3809 SITE 2 AC1 6 HOH A3834 HOH A3861 SITE 1 AC2 3 ASP A 95 HOH A3806 HOH A3831 SITE 1 AC3 7 ASP A 93 ASP A 95 HOH A3804 HOH A3814 SITE 2 AC3 7 HOH A3816 HOH A3818 HOH A3821 SITE 1 AC4 23 GLY A 19 VAL A 20 GLY A 21 LYS A 22 SITE 2 AC4 23 SER A 23 CYS A 24 TYR A 34 ASP A 36 SITE 3 AC4 23 LYS A 101 ASN A 122 LYS A 123 ASP A 125 SITE 4 AC4 23 LEU A 126 SER A 152 ALA A 153 LYS A 154 SITE 5 AC4 23 MG A1001 HOH A3809 HOH A3834 HOH A3846 SITE 6 AC4 23 HOH A3858 HOH A3888 HOH A3936 CRYST1 107.385 107.385 45.226 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009312 0.005376 0.000000 0.00000 SCALE2 0.000000 0.010753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022111 0.00000 CONECT 163 1298 CONECT 667 1300 CONECT 668 1299 CONECT 1298 163 1304 1336 1337 CONECT 1298 1362 1389 CONECT 1299 668 1334 1359 CONECT 1300 667 1344 CONECT 1301 1302 1303 1304 1305 CONECT 1302 1301 CONECT 1303 1301 CONECT 1304 1298 1301 CONECT 1305 1301 1306 CONECT 1306 1305 1307 1308 1309 CONECT 1307 1306 CONECT 1308 1306 CONECT 1309 1306 1310 CONECT 1310 1309 1311 CONECT 1311 1310 1312 1313 CONECT 1312 1311 1317 CONECT 1313 1311 1314 1315 CONECT 1314 1313 CONECT 1315 1313 1316 1317 CONECT 1316 1315 CONECT 1317 1312 1315 1318 CONECT 1318 1317 1319 1328 CONECT 1319 1318 1320 CONECT 1320 1319 1321 CONECT 1321 1320 1322 1328 CONECT 1322 1321 1323 1324 CONECT 1323 1322 CONECT 1324 1322 1325 CONECT 1325 1324 1326 1327 CONECT 1326 1325 CONECT 1327 1325 1328 CONECT 1328 1318 1321 1327 CONECT 1334 1299 CONECT 1336 1298 CONECT 1337 1298 CONECT 1344 1300 CONECT 1359 1299 CONECT 1362 1298 CONECT 1389 1298 MASTER 353 0 4 6 6 0 11 6 1509 1 42 14 END