HEADER HYDROLASE 10-OCT-07 2RI8 TITLE PENICILLIUM CITRINUM ALPHA-1,2-MANNOSIDASE COMPLEX WITH GLYCEROL CAVEAT 2RI8 MAN D 3 HAS WRONG CHIRALITY AT ATOM C1 MAN G 3 HAS WRONG CAVEAT 2 2RI8 CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAN(9)-ALPHA-MANNOSIDASE; COMPND 5 EC: 3.2.1.113; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENICILLIUM CITRINUM; SOURCE 3 ORGANISM_TAXID: 5077; SOURCE 4 GENE: MSDC; SOURCE 5 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5062; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: MS2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTAPM1 KEYWDS ALTERNATIVE CONFORMATIONS, MODULATION OF ACTIVITY, GLYCOPROTEIN, KEYWDS 2 GLYCOSIDASE, HYDROLASE, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR Y.D.LOBSANOV,T.YOSHIDA,T.DESMET,W.NERINCKX,P.YIP,M.CLAEYSSENS, AUTHOR 2 A.HERSCOVICS,P.L.HOWELL REVDAT 5 29-JUL-20 2RI8 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 24-JAN-18 2RI8 1 AUTHOR REVDAT 3 13-JUL-11 2RI8 1 VERSN REVDAT 2 24-FEB-09 2RI8 1 VERSN REVDAT 1 25-MAR-08 2RI8 0 JRNL AUTH Y.D.LOBSANOV,T.YOSHIDA,T.DESMET,W.NERINCKX,P.YIP, JRNL AUTH 2 M.CLAEYSSENS,A.HERSCOVICS,P.L.HOWELL JRNL TITL MODULATION OF ACTIVITY BY ARG407: STRUCTURE OF A FUNGAL JRNL TITL 2 ALPHA-1,2-MANNOSIDASE IN COMPLEX WITH A SUBSTRATE ANALOGUE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 64 227 2008 JRNL REFN ISSN 0907-4449 JRNL PMID 18323617 JRNL DOI 10.1107/S0907444907065572 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 146923.200 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 52893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3754 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6384 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 497 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7450 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 278 REMARK 3 SOLVENT ATOMS : 692 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : 2.17000 REMARK 3 B33 (A**2) : -1.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.940 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.090 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.930 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.670 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 84.98 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NEW_GOL.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : CARB+MAM+LYX_NEW.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NEW_GOL.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.77 REMARK 200 R MERGE FOR SHELL (I) : 0.27800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-18% PEG 6000, 0.1M HEPES, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.49850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE B 2168 O HOH B 284 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A1067 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 PRO B2067 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1059 -36.49 -131.71 REMARK 500 THR A1114 145.11 -171.22 REMARK 500 ARG A1126 -61.76 -98.48 REMARK 500 ASN A1148 38.94 -168.29 REMARK 500 HIS A1186 15.42 84.41 REMARK 500 ASP A1267 -83.05 -11.12 REMARK 500 ARG A1321 -9.80 82.30 REMARK 500 TRP A1379 23.41 -144.28 REMARK 500 VAL A1405 40.00 -98.08 REMARK 500 ALA A1509 159.78 -46.30 REMARK 500 ALA A1509 160.32 -46.30 REMARK 500 ASP B2110 85.71 -153.59 REMARK 500 PHE B2111 4.54 -63.05 REMARK 500 ASN B2144 74.84 -109.41 REMARK 500 ASN B2148 100.60 -56.62 REMARK 500 ASP B2171 88.87 -52.28 REMARK 500 PRO B2173 -77.78 -49.71 REMARK 500 ILE B2183 23.77 -69.48 REMARK 500 THR B2184 -64.77 -128.19 REMARK 500 THR B2213 -86.29 -82.06 REMARK 500 ASP B2215 109.52 -59.09 REMARK 500 LYS B2231 69.59 -115.68 REMARK 500 GLU B2238 70.38 -117.75 REMARK 500 ASP B2252 -89.02 -110.95 REMARK 500 ASP B2267 -78.78 -18.54 REMARK 500 ASP B2280 93.55 -163.23 REMARK 500 ASN B2320 77.17 30.23 REMARK 500 CYS B2332 0.34 -63.40 REMARK 500 LYS B2371 35.22 77.50 REMARK 500 TRP B2379 10.80 -154.49 REMARK 500 LYS B2383 23.98 -147.47 REMARK 500 LYS B2394 -60.56 -92.88 REMARK 500 VAL B2405 38.04 -98.28 REMARK 500 ASN B2457 17.22 54.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1550 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 158 O REMARK 620 2 HOH A 159 O 87.7 REMARK 620 3 HOH A 161 O 108.2 79.3 REMARK 620 4 HOH A 162 O 69.6 127.8 65.6 REMARK 620 5 THR A1501 O 89.1 144.3 135.0 83.6 REMARK 620 6 THR A1501 OG1 146.8 123.5 71.1 81.0 72.2 REMARK 620 7 GOL A1901 O1 140.3 75.6 103.8 147.6 84.5 66.7 REMARK 620 8 GOL A1901 O2 75.5 73.4 152.3 137.0 71.3 121.1 65.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1551 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 165 O REMARK 620 2 HOH B 166 O 72.8 REMARK 620 3 HOH B 167 O 134.1 84.0 REMARK 620 4 HOH B 209 O 82.1 105.5 66.5 REMARK 620 5 THR B2501 O 74.2 90.6 146.5 145.9 REMARK 620 6 THR B2501 OG1 79.7 150.4 123.9 80.6 71.4 REMARK 620 7 GOL B2901 O2 129.7 71.6 75.1 141.5 71.9 121.4 REMARK 620 8 GOL B2901 O1 146.5 134.8 75.6 102.5 85.4 68.6 64.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KKT RELATED DB: PDB REMARK 900 RELATED ID: 1KRE RELATED DB: PDB REMARK 900 RELATED ID: 1KRF RELATED DB: PDB REMARK 900 RELATED ID: 2RI9 RELATED DB: PDB DBREF 2RI8 A 1036 1510 UNP P31723 MAN12_PENCI 36 510 DBREF 2RI8 B 2036 2510 UNP P31723 MAN12_PENCI 36 510 SEQRES 1 A 475 SER ASN GLN ALA LYS ALA ASP ALA VAL LYS GLU ALA PHE SEQRES 2 A 475 GLN HIS ALA TRP ASN GLY TYR MET LYS TYR ALA PHE PRO SEQRES 3 A 475 HIS ASP GLU LEU THR PRO VAL SER ASN GLY HIS ALA ASP SEQRES 4 A 475 SER ARG ASN GLY TRP GLY ALA SER ALA VAL ASP ALA LEU SEQRES 5 A 475 SER THR ALA VAL ILE MET GLY LYS ALA ASP VAL VAL ASN SEQRES 6 A 475 ALA ILE LEU GLU HIS VAL ALA ASP ILE ASP PHE SER LYS SEQRES 7 A 475 THR SER ASP THR VAL SER LEU PHE GLU THR THR ILE ARG SEQRES 8 A 475 TYR LEU ALA GLY MET LEU SER GLY TYR ASP LEU LEU GLN SEQRES 9 A 475 GLY PRO ALA LYS ASN LEU VAL ASP ASN GLN ASP LEU ILE SEQRES 10 A 475 ASP GLY LEU LEU ASP GLN SER ARG ASN LEU ALA ASP VAL SEQRES 11 A 475 LEU LYS PHE ALA PHE ASP THR PRO SER GLY VAL PRO TYR SEQRES 12 A 475 ASN ASN ILE ASN ILE THR SER HIS GLY ASN ASP GLY ALA SEQRES 13 A 475 THR THR ASN GLY LEU ALA VAL THR GLY THR LEU VAL LEU SEQRES 14 A 475 GLU TRP THR ARG LEU SER ASP LEU THR GLY ASP GLU GLU SEQRES 15 A 475 TYR ALA LYS LEU SER GLN LYS ALA GLU SER TYR LEU LEU SEQRES 16 A 475 LYS PRO GLN PRO SER SER SER GLU PRO PHE PRO GLY LEU SEQRES 17 A 475 VAL GLY SER SER ILE ASN ILE ASN ASP GLY GLN PHE ALA SEQRES 18 A 475 ASP SER ARG VAL SER TRP ASN GLY GLY ASP ASP SER PHE SEQRES 19 A 475 TYR GLU TYR LEU ILE LYS MET TYR VAL TYR ASP PRO LYS SEQRES 20 A 475 ARG PHE GLU THR TYR LYS ASP ARG TRP VAL LEU ALA ALA SEQRES 21 A 475 GLU SER THR ILE LYS HIS LEU LYS SER HIS PRO LYS SER SEQRES 22 A 475 ARG PRO ASP LEU THR PHE LEU SER SER TYR SER ASN ARG SEQRES 23 A 475 ASN TYR ASP LEU SER SER GLN HIS LEU THR CYS PHE ASP SEQRES 24 A 475 GLY GLY SER PHE LEU LEU GLY GLY THR VAL LEU ASP ARG SEQRES 25 A 475 GLN ASP PHE ILE ASP PHE GLY LEU GLU LEU VAL ASP GLY SEQRES 26 A 475 CYS GLU ALA THR TYR ASN SER THR LEU THR LYS ILE GLY SEQRES 27 A 475 PRO ASP SER TRP GLY TRP ASP PRO LYS LYS VAL PRO SER SEQRES 28 A 475 ASP GLN LYS GLU PHE TYR GLU LYS ALA GLY PHE TYR ILE SEQRES 29 A 475 SER SER GLY SER TYR VAL LEU ARG PRO GLU VAL ILE GLU SEQRES 30 A 475 SER PHE TYR TYR ALA HIS ARG VAL THR GLY LYS GLU ILE SEQRES 31 A 475 TYR ARG ASP TRP VAL TRP ASN ALA PHE VAL ALA ILE ASN SEQRES 32 A 475 SER THR CYS ARG THR ASP SER GLY PHE ALA ALA VAL SER SEQRES 33 A 475 ASP VAL ASN LYS ALA ASN GLY GLY SER LYS TYR ASP ASN SEQRES 34 A 475 GLN GLU SER PHE LEU PHE ALA GLU VAL MET LYS TYR SER SEQRES 35 A 475 TYR LEU ALA HIS SER GLU ASP ALA ALA TRP GLN VAL GLN SEQRES 36 A 475 LYS GLY GLY LYS ASN THR PHE VAL TYR ASN THR GLU ALA SEQRES 37 A 475 HIS PRO ILE SER VAL ALA ARG SEQRES 1 B 475 SER ASN GLN ALA LYS ALA ASP ALA VAL LYS GLU ALA PHE SEQRES 2 B 475 GLN HIS ALA TRP ASN GLY TYR MET LYS TYR ALA PHE PRO SEQRES 3 B 475 HIS ASP GLU LEU THR PRO VAL SER ASN GLY HIS ALA ASP SEQRES 4 B 475 SER ARG ASN GLY TRP GLY ALA SER ALA VAL ASP ALA LEU SEQRES 5 B 475 SER THR ALA VAL ILE MET GLY LYS ALA ASP VAL VAL ASN SEQRES 6 B 475 ALA ILE LEU GLU HIS VAL ALA ASP ILE ASP PHE SER LYS SEQRES 7 B 475 THR SER ASP THR VAL SER LEU PHE GLU THR THR ILE ARG SEQRES 8 B 475 TYR LEU ALA GLY MET LEU SER GLY TYR ASP LEU LEU GLN SEQRES 9 B 475 GLY PRO ALA LYS ASN LEU VAL ASP ASN GLN ASP LEU ILE SEQRES 10 B 475 ASP GLY LEU LEU ASP GLN SER ARG ASN LEU ALA ASP VAL SEQRES 11 B 475 LEU LYS PHE ALA PHE ASP THR PRO SER GLY VAL PRO TYR SEQRES 12 B 475 ASN ASN ILE ASN ILE THR SER HIS GLY ASN ASP GLY ALA SEQRES 13 B 475 THR THR ASN GLY LEU ALA VAL THR GLY THR LEU VAL LEU SEQRES 14 B 475 GLU TRP THR ARG LEU SER ASP LEU THR GLY ASP GLU GLU SEQRES 15 B 475 TYR ALA LYS LEU SER GLN LYS ALA GLU SER TYR LEU LEU SEQRES 16 B 475 LYS PRO GLN PRO SER SER SER GLU PRO PHE PRO GLY LEU SEQRES 17 B 475 VAL GLY SER SER ILE ASN ILE ASN ASP GLY GLN PHE ALA SEQRES 18 B 475 ASP SER ARG VAL SER TRP ASN GLY GLY ASP ASP SER PHE SEQRES 19 B 475 TYR GLU TYR LEU ILE LYS MET TYR VAL TYR ASP PRO LYS SEQRES 20 B 475 ARG PHE GLU THR TYR LYS ASP ARG TRP VAL LEU ALA ALA SEQRES 21 B 475 GLU SER THR ILE LYS HIS LEU LYS SER HIS PRO LYS SER SEQRES 22 B 475 ARG PRO ASP LEU THR PHE LEU SER SER TYR SER ASN ARG SEQRES 23 B 475 ASN TYR ASP LEU SER SER GLN HIS LEU THR CYS PHE ASP SEQRES 24 B 475 GLY GLY SER PHE LEU LEU GLY GLY THR VAL LEU ASP ARG SEQRES 25 B 475 GLN ASP PHE ILE ASP PHE GLY LEU GLU LEU VAL ASP GLY SEQRES 26 B 475 CYS GLU ALA THR TYR ASN SER THR LEU THR LYS ILE GLY SEQRES 27 B 475 PRO ASP SER TRP GLY TRP ASP PRO LYS LYS VAL PRO SER SEQRES 28 B 475 ASP GLN LYS GLU PHE TYR GLU LYS ALA GLY PHE TYR ILE SEQRES 29 B 475 SER SER GLY SER TYR VAL LEU ARG PRO GLU VAL ILE GLU SEQRES 30 B 475 SER PHE TYR TYR ALA HIS ARG VAL THR GLY LYS GLU ILE SEQRES 31 B 475 TYR ARG ASP TRP VAL TRP ASN ALA PHE VAL ALA ILE ASN SEQRES 32 B 475 SER THR CYS ARG THR ASP SER GLY PHE ALA ALA VAL SER SEQRES 33 B 475 ASP VAL ASN LYS ALA ASN GLY GLY SER LYS TYR ASP ASN SEQRES 34 B 475 GLN GLU SER PHE LEU PHE ALA GLU VAL MET LYS TYR SER SEQRES 35 B 475 TYR LEU ALA HIS SER GLU ASP ALA ALA TRP GLN VAL GLN SEQRES 36 B 475 LYS GLY GLY LYS ASN THR PHE VAL TYR ASN THR GLU ALA SEQRES 37 B 475 HIS PRO ILE SER VAL ALA ARG MODRES 2RI8 ASN A 1182 ASN GLYCOSYLATION SITE MODRES 2RI8 ASN A 1366 ASN GLYCOSYLATION SITE MODRES 2RI8 ASN A 1438 ASN GLYCOSYLATION SITE MODRES 2RI8 ASN B 2182 ASN GLYCOSYLATION SITE MODRES 2RI8 ASN B 2366 ASN GLYCOSYLATION SITE MODRES 2RI8 ASN B 2438 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET MAN D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET MAN G 3 11 HET MAN G 4 11 HET MAN G 5 11 HET NAG H 1 14 HET NAG H 2 14 HET CA A1550 1 HET GOL A1900 6 HET GOL A1901 6 HET GOL A1903 6 HET GOL A1904 6 HET CA B1551 1 HET GOL B2900 6 HET GOL B2901 6 HET GOL B2903 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 12(C8 H15 N O6) FORMUL 4 MAN 6(C6 H12 O6) FORMUL 9 CA 2(CA 2+) FORMUL 10 GOL 7(C3 H8 O3) FORMUL 18 HOH *692(H2 O) HELIX 1 1 SER A 1036 ALA A 1059 1 24 HELIX 2 2 GLY A 1080 GLY A 1094 1 15 HELIX 3 3 LYS A 1095 ASP A 1108 1 14 HELIX 4 4 LEU A 1120 ARG A 1126 1 7 HELIX 5 5 ARG A 1126 GLN A 1139 1 14 HELIX 6 6 ASN A 1148 LYS A 1167 1 20 HELIX 7 7 PHE A 1168 ASP A 1171 5 4 HELIX 8 8 LEU A 1196 THR A 1201 1 6 HELIX 9 9 LEU A 1202 GLY A 1214 1 13 HELIX 10 10 GLU A 1216 LYS A 1231 1 16 HELIX 11 11 PRO A 1234 GLU A 1238 5 5 HELIX 12 12 ASP A 1267 ASP A 1280 1 14 HELIX 13 13 PHE A 1284 LEU A 1302 1 19 HELIX 14 14 CYS A 1332 LEU A 1345 1 14 HELIX 15 15 ARG A 1347 SER A 1367 1 21 HELIX 16 16 GLN A 1388 GLY A 1396 1 9 HELIX 17 17 PRO A 1408 GLY A 1422 1 15 HELIX 18 18 LYS A 1423 CYS A 1441 1 19 HELIX 19 19 LYS A 1455 GLY A 1459 5 5 HELIX 20 20 SER A 1467 GLU A 1472 1 6 HELIX 21 21 GLU A 1472 ALA A 1480 1 9 HELIX 22 22 SER B 2036 ALA B 2059 1 24 HELIX 23 23 GLY B 2080 GLY B 2094 1 15 HELIX 24 24 LYS B 2095 ILE B 2109 1 15 HELIX 25 25 LEU B 2120 GLN B 2139 1 20 HELIX 26 26 ASN B 2148 LYS B 2167 1 20 HELIX 27 27 PHE B 2168 PHE B 2170 5 3 HELIX 28 28 LEU B 2196 THR B 2201 1 6 HELIX 29 29 LEU B 2202 THR B 2213 1 12 HELIX 30 30 GLU B 2216 LYS B 2231 1 16 HELIX 31 31 PRO B 2234 GLU B 2238 5 5 HELIX 32 32 ASP B 2267 ASP B 2280 1 14 HELIX 33 33 PHE B 2284 LEU B 2302 1 19 HELIX 34 34 LEU B 2330 CYS B 2332 5 3 HELIX 35 35 PHE B 2333 LEU B 2345 1 13 HELIX 36 36 ARG B 2347 SER B 2367 1 21 HELIX 37 37 ASP B 2380 VAL B 2384 5 5 HELIX 38 38 GLN B 2388 GLY B 2396 1 9 HELIX 39 39 PRO B 2408 GLY B 2422 1 15 HELIX 40 40 LYS B 2423 CYS B 2441 1 19 HELIX 41 41 LYS B 2455 GLY B 2459 5 5 HELIX 42 42 SER B 2467 GLU B 2472 1 6 HELIX 43 43 GLU B 2472 ALA B 2480 1 9 SHEET 1 A 2 GLU A1064 THR A1066 0 SHEET 2 A 2 GLY A1071 ALA A1073 -1 O ALA A1073 N GLU A1064 SHEET 1 B 2 VAL A1118 SER A1119 0 SHEET 2 B 2 ASN A1180 ILE A1181 -1 O ILE A1181 N VAL A1118 SHEET 1 C 2 THR A1193 GLY A1195 0 SHEET 2 C 2 SER A1247 ASN A1249 -1 O ILE A1248 N ASN A1194 SHEET 1 D 2 LYS A1303 SER A1304 0 SHEET 2 D 2 PHE A1314 LEU A1315 -1 O PHE A1314 N SER A1304 SHEET 1 E 2 SER A1317 SER A1319 0 SHEET 2 E 2 ASN A1322 ASP A1324 -1 O ASN A1322 N SER A1319 SHEET 1 F 3 SER A1326 GLN A1328 0 SHEET 2 F 3 SER A1376 GLY A1378 -1 O TRP A1377 N SER A1327 SHEET 3 F 3 TYR A1398 SER A1401 -1 O TYR A1398 N GLY A1378 SHEET 1 G 2 PHE A1497 TYR A1499 0 SHEET 2 G 2 PRO A1505 SER A1507 -1 O ILE A1506 N VAL A1498 SHEET 1 H 2 GLU B2064 THR B2066 0 SHEET 2 H 2 GLY B2071 ALA B2073 -1 O ALA B2073 N GLU B2064 SHEET 1 I 2 VAL B2118 SER B2119 0 SHEET 2 I 2 ASN B2180 ILE B2181 -1 O ILE B2181 N VAL B2118 SHEET 1 J 2 THR B2193 GLY B2195 0 SHEET 2 J 2 SER B2247 ASN B2249 -1 O ILE B2248 N ASN B2194 SHEET 1 K 2 LYS B2303 SER B2304 0 SHEET 2 K 2 PHE B2314 LEU B2315 -1 O PHE B2314 N SER B2304 SHEET 1 L 2 SER B2317 SER B2319 0 SHEET 2 L 2 ASN B2322 ASP B2324 -1 O ASN B2322 N SER B2319 SHEET 1 M 3 SER B2326 GLN B2328 0 SHEET 2 M 3 SER B2376 GLY B2378 -1 O TRP B2377 N SER B2327 SHEET 3 M 3 TYR B2398 SER B2401 -1 O SER B2400 N SER B2376 SHEET 1 N 2 PHE B2497 TYR B2499 0 SHEET 2 N 2 PRO B2505 SER B2507 -1 O ILE B2506 N VAL B2498 SSBOND 1 CYS A 1332 CYS A 1361 1555 1555 2.03 SSBOND 2 CYS B 2332 CYS B 2361 1555 1555 2.04 LINK ND2 ASN A1182 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A1366 C1 NAG D 1 1555 1555 1.46 LINK ND2 ASN A1438 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN B2182 C1 NAG F 1 1555 1555 1.46 LINK ND2 ASN B2366 C1 NAG G 1 1555 1555 1.46 LINK ND2 ASN B2438 C1 NAG H 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.39 LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.40 LINK O3 MAN D 3 C1 MAN D 4 1555 1555 1.40 LINK O6 MAN D 3 C1 MAN D 5 1555 1555 1.41 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.39 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.39 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.39 LINK O4 NAG G 2 C1 MAN G 3 1555 1555 1.39 LINK O3 MAN G 3 C1 MAN G 4 1555 1555 1.40 LINK O6 MAN G 3 C1 MAN G 5 1555 1555 1.40 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.39 LINK O HOH A 158 CA CA A1550 1555 1555 2.57 LINK O HOH A 159 CA CA A1550 1555 1555 2.59 LINK O HOH A 161 CA CA A1550 1555 1555 2.67 LINK O HOH A 162 CA CA A1550 1555 1555 2.78 LINK O THR A1501 CA CA A1550 1555 1555 2.53 LINK OG1 THR A1501 CA CA A1550 1555 1555 2.64 LINK CA CA A1550 O1 GOL A1901 1555 1555 2.61 LINK CA CA A1550 O2 GOL A1901 1555 1555 2.63 LINK O HOH B 165 CA CA B1551 1555 1555 2.76 LINK O HOH B 166 CA CA B1551 1555 1555 2.63 LINK O HOH B 167 CA CA B1551 1555 1555 2.69 LINK O HOH B 209 CA CA B1551 1555 1555 2.66 LINK CA CA B1551 O THR B2501 1555 1555 2.53 LINK CA CA B1551 OG1 THR B2501 1555 1555 2.73 LINK CA CA B1551 O2 GOL B2901 1555 1555 2.62 LINK CA CA B1551 O1 GOL B2901 1555 1555 2.67 CISPEP 1 PHE A 1060 PRO A 1061 0 0.26 CISPEP 2 GLN A 1233 PRO A 1234 0 -0.02 CISPEP 3 PHE B 2060 PRO B 2061 0 0.43 CISPEP 4 GLN B 2233 PRO B 2234 0 0.35 CRYST1 56.487 110.997 86.235 90.00 99.17 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017703 0.000000 0.002858 0.00000 SCALE2 0.000000 0.009009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011746 0.00000