HEADER TRANSFERASE 11-OCT-07 2RIJ TITLE CRYSTAL STRUCTURE OF A PUTATIVE 2,3,4,5-TETRAHYDROPYRIDINE-2- TITLE 2 CARBOXYLATE N-SUCCINYLTRANSFERASE (CJ1605C, DAPD) FROM CAMPYLOBACTER TITLE 3 JEJUNI AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE N- COMPND 3 SUCCINYLTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 EC: 2.3.1.117; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 STRAIN: NCTC 11168 / SEROTYPE O:2; SOURCE 5 GENE: NP_282733.1, DAPD, CJ1605C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2RIJ 1 REMARK SEQADV REVDAT 6 24-JUL-19 2RIJ 1 REMARK LINK REVDAT 5 25-OCT-17 2RIJ 1 REMARK REVDAT 4 13-JUL-11 2RIJ 1 VERSN REVDAT 3 23-MAR-11 2RIJ 1 TITLE KEYWDS REVDAT 2 24-FEB-09 2RIJ 1 VERSN REVDAT 1 23-OCT-07 2RIJ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE JRNL TITL 2 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE JRNL TITL 3 N-SUCCINYLTRANSFERASE (NP_282733.1) FROM CAMPYLOBACTER JRNL TITL 4 JEJUNI AT 1.90 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 59119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2991 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4105 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2904 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 448 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.28000 REMARK 3 B22 (A**2) : 1.28000 REMARK 3 B33 (A**2) : -1.91000 REMARK 3 B12 (A**2) : 0.64000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.196 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3070 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2095 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4162 ; 1.550 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5173 ; 0.953 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 413 ; 5.982 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;37.637 ;25.354 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;12.095 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.951 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 476 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3441 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 597 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 612 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2185 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1489 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1702 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 318 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.232 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 80 ; 0.278 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 41 ; 0.222 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2093 ; 2.274 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 800 ; 0.567 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3108 ; 3.005 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1217 ; 5.439 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1037 ; 7.341 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 380 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8420 59.4100 -28.8890 REMARK 3 T TENSOR REMARK 3 T11: -0.0112 T22: -0.0492 REMARK 3 T33: -0.0029 T12: -0.0202 REMARK 3 T13: 0.0136 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.0673 L22: 0.4448 REMARK 3 L33: 0.4055 L12: -0.0017 REMARK 3 L13: 0.0071 L23: -0.2014 REMARK 3 S TENSOR REMARK 3 S11: -0.0298 S12: -0.0127 S13: -0.0280 REMARK 3 S21: 0.0249 S22: 0.0207 S23: 0.0628 REMARK 3 S31: 0.0982 S32: -0.0427 S33: 0.0091 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF REMARK 3 THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR REMARK 3 THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. CITRATE, CL AND GLYCEROL ARE MODELED BASED ON REMARK 3 CRYSTALLIZATION AND CRYO CONDITIONS. REMARK 3 5. THERE IS UNMODELED DENSITY NEAR ARG 218. REMARK 4 REMARK 4 2RIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957, 0.95373, 0.97942 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59121 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : 0.12400 REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.01100 REMARK 200 R SYM FOR SHELL (I) : 1.06800 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 1.0M NA CITRATE, 0.1M REMARK 280 CACODYLATE PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 67.54650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.99799 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 71.24733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 67.54650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 38.99799 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 71.24733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 67.54650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 38.99799 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 71.24733 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 67.54650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 38.99799 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 71.24733 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 67.54650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 38.99799 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 71.24733 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 67.54650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 38.99799 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 71.24733 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 77.99598 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 142.49467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 77.99598 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 142.49467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 77.99598 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 142.49467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 77.99598 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 142.49467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 77.99598 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 142.49467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 77.99598 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 142.49467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF BOTH HEXAMER AND TRIMER AS SIGNIFICANT REMARK 300 OLIGOMERIZATION STATES IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23300 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 67.54650 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 116.99397 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -67.54650 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 116.99397 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -67.54650 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 38.99799 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -142.49467 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 155.99196 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -142.49467 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 67.54650 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 38.99799 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -142.49467 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10610 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 67.54650 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 116.99397 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -67.54650 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 116.99397 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 387 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 397 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 419 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 444 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 491 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 546 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 665 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 834 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 381 REMARK 465 ASN A 382 REMARK 465 GLU A 383 REMARK 465 ALA A 384 REMARK 465 LEU A 385 REMARK 465 HIS A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CD CE NZ REMARK 470 LYS A 39 CD CE NZ REMARK 470 GLN A 68 CD OE1 NE2 REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 GLU A 101 CD OE1 OE2 REMARK 470 LYS A 132 CE NZ REMARK 470 SER A 286 OG REMARK 470 GLU A 332 CD OE1 OE2 REMARK 470 LYS A 349 NZ REMARK 470 LYS A 377 CE NZ REMARK 470 LYS A 380 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 287 O HOH A 804 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 218 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 1 -31.92 85.82 REMARK 500 ASP A 121 18.80 57.97 REMARK 500 ARG A 155 -1.37 69.46 REMARK 500 HIS A 210 -30.34 -131.38 REMARK 500 ALA A 241 24.90 -147.95 REMARK 500 SER A 263 -9.27 83.14 REMARK 500 PHE A 343 38.08 -93.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 387 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 388 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 390 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 377381 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 2RIJ A 1 386 UNP Q0P823 Q0P823_CAMJE 1 386 SEQADV 2RIJ GLY A 0 UNP Q0P823 EXPRESSION TAG SEQRES 1 A 387 GLY MSE ILE ASN THR LYS GLU ASP PHE LEU LEU LEU ILE SEQRES 2 A 387 LYS GLN ILE GLU GLN LYS SER GLY TYR LYS LYS PRO LYS SEQRES 3 A 387 ALA PHE GLY ILE ALA ARG LEU ASP ARG GLY GLN LEU ASN SEQRES 4 A 387 LYS ASN LYS ILE LEU GLN ALA SER PHE ALA LEU ILE ASN SEQRES 5 A 387 TYR GLU GLN ASN PHE GLY SER ALA ALA ILE MSE LEU GLU SEQRES 6 A 387 ALA PHE MSE GLN ARG GLY VAL GLU ILE ASP PHE ASN ALA SEQRES 7 A 387 SER GLU PHE VAL GLN THR LEU LYS LEU GLU ASP ILE ASP SEQRES 8 A 387 PHE ALA LEU SER CYS PHE LYS PRO PHE LEU GLU GLU ASP SEQRES 9 A 387 GLY HIS GLN ASN ILE ASP LEU LEU LYS ILE ILE LYS ASP SEQRES 10 A 387 LYS PHE LYS ASP ASP GLU PHE SER PHE VAL CYS LEU PHE SEQRES 11 A 387 GLU ASP LYS GLU PRO LEU SER VAL GLU SER ILE TYR LEU SEQRES 12 A 387 LYS LEU TYR LEU LEU SER THR LYS LYS VAL PRO LEU ARG SEQRES 13 A 387 SER ILE ASN LEU ASN GLY ALA PHE GLY LEU LEU SER ASN SEQRES 14 A 387 VAL ALA TRP SER ASP ASP LYS PRO ILE GLU LEU GLU TYR SEQRES 15 A 387 LEU ARG ALA ASN GLU MSE ARG LEU LYS MSE SER ASN GLN SEQRES 16 A 387 TYR PRO LYS ILE ASP PHE VAL ASP LYS PHE PRO ARG PHE SEQRES 17 A 387 LEU ALA HIS ILE ILE PRO GLU ASP ASN THR ARG ILE LEU SEQRES 18 A 387 GLU SER SER LYS VAL ARG MSE GLY ALA SER LEU ALA ALA SEQRES 19 A 387 GLY THR THR ILE MSE PRO GLY ALA SER TYR VAL ASN PHE SEQRES 20 A 387 ASN ALA GLY THR THR GLY ALA CYS MSE VAL GLU GLY ARG SEQRES 21 A 387 ILE SER SER SER ALA ILE VAL GLY GLU GLY SER ASP VAL SEQRES 22 A 387 GLY GLY GLY ALA SER ILE LEU GLY VAL LEU SER GLY THR SEQRES 23 A 387 SER GLY ASN ALA ILE SER VAL GLY LYS ALA CYS LEU LEU SEQRES 24 A 387 GLY ALA ASN SER VAL THR GLY ILE PRO LEU GLY ASP ASN SEQRES 25 A 387 CYS ILE VAL ASP ALA GLY ILE ALA VAL LEU GLU GLY THR SEQRES 26 A 387 LYS PHE LEU LEU LYS ASP ALA GLU GLU LEU ALA LYS LEU SEQRES 27 A 387 ASN PRO TYR PHE ASN PHE ASP LYS GLU ILE TYR LYS GLY SEQRES 28 A 387 LEU GLU LEU LYS GLY LEU ASN GLY LEU HIS PHE ARG GLN SEQRES 29 A 387 ASP SER ILE SER GLY ALA MSE ILE VAL ALA LEU ASN LYS SEQRES 30 A 387 LYS ALA VAL LYS LEU ASN GLU ALA LEU HIS MODRES 2RIJ MSE A 1 MET SELENOMETHIONINE MODRES 2RIJ MSE A 62 MET SELENOMETHIONINE MODRES 2RIJ MSE A 67 MET SELENOMETHIONINE MODRES 2RIJ MSE A 187 MET SELENOMETHIONINE MODRES 2RIJ MSE A 191 MET SELENOMETHIONINE MODRES 2RIJ MSE A 227 MET SELENOMETHIONINE MODRES 2RIJ MSE A 238 MET SELENOMETHIONINE MODRES 2RIJ MSE A 255 MET SELENOMETHIONINE MODRES 2RIJ MSE A 370 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 62 13 HET MSE A 67 8 HET MSE A 187 8 HET MSE A 191 8 HET MSE A 227 8 HET MSE A 238 8 HET MSE A 255 8 HET MSE A 370 8 HET CL A 387 1 HET CL A 388 1 HET CIT A 389 13 HET GOL A 390 6 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM CIT CITRIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 CL 2(CL 1-) FORMUL 4 CIT C6 H8 O7 FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *448(H2 O) HELIX 1 1 THR A 4 GLN A 17 1 14 HELIX 2 2 ASN A 55 ARG A 69 1 15 HELIX 3 3 LYS A 85 PHE A 96 1 12 HELIX 4 4 LYS A 97 LEU A 100 5 4 HELIX 5 5 HIS A 105 LYS A 117 1 13 HELIX 6 6 SER A 136 THR A 149 1 14 HELIX 7 7 GLY A 161 LEU A 166 1 6 HELIX 8 8 GLU A 178 SER A 192 1 15 HELIX 9 9 ARG A 206 HIS A 210 5 5 HELIX 10 10 GLU A 221 VAL A 225 5 5 HELIX 11 11 ASP A 330 ASN A 338 1 9 HELIX 12 12 LEU A 351 LYS A 354 5 4 HELIX 13 13 ASN A 375 LYS A 380 1 6 SHEET 1 A 3 ILE A 42 PHE A 47 0 SHEET 2 A 3 ALA A 26 ARG A 34 -1 N ASP A 33 O LEU A 43 SHEET 3 A 3 ASN A 51 TYR A 52 -1 O ASN A 51 N PHE A 27 SHEET 1 B 4 ILE A 42 PHE A 47 0 SHEET 2 B 4 ALA A 26 ARG A 34 -1 N ASP A 33 O LEU A 43 SHEET 3 B 4 PHE A 123 LEU A 128 -1 O LEU A 128 N ALA A 26 SHEET 4 B 4 GLU A 79 THR A 83 -1 N GLN A 82 O PHE A 125 SHEET 1 C 3 LYS A 175 ILE A 177 0 SHEET 2 C 3 VAL A 169 SER A 172 -1 N ALA A 170 O ILE A 177 SHEET 3 C 3 PHE A 200 ASP A 202 -1 O ASP A 202 N VAL A 169 SHEET 1 D10 ARG A 218 ILE A 219 0 SHEET 2 D10 THR A 236 ILE A 237 1 O ILE A 237 N ARG A 218 SHEET 3 D10 MSE A 255 VAL A 256 1 O VAL A 256 N THR A 236 SHEET 4 D10 ASP A 271 VAL A 272 1 O VAL A 272 N MSE A 255 SHEET 5 D10 LEU A 297 LEU A 298 1 O LEU A 298 N ASP A 271 SHEET 6 D10 ILE A 313 VAL A 314 1 O VAL A 314 N LEU A 297 SHEET 7 D10 LEU A 359 GLN A 363 1 O PHE A 361 N ILE A 313 SHEET 8 D10 MSE A 370 LEU A 374 -1 O ILE A 371 N ARG A 362 SHEET 9 D10 LYS A 325 LEU A 328 1 N LEU A 327 O MSE A 370 SHEET 10 D10 ILE A 347 LYS A 349 -1 O TYR A 348 N PHE A 326 SHEET 1 E 5 TYR A 243 VAL A 244 0 SHEET 2 E 5 ARG A 259 ILE A 260 1 O ILE A 260 N TYR A 243 SHEET 3 E 5 SER A 277 ILE A 278 1 O ILE A 278 N ARG A 259 SHEET 4 E 5 VAL A 303 THR A 304 1 O THR A 304 N SER A 277 SHEET 5 E 5 ALA A 319 VAL A 320 1 O VAL A 320 N VAL A 303 SHEET 1 F 3 GLY A 249 THR A 250 0 SHEET 2 F 3 ILE A 265 VAL A 266 1 O VAL A 266 N GLY A 249 SHEET 3 F 3 SER A 291 VAL A 292 1 O VAL A 292 N ILE A 265 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N ILE A 2 1555 1555 1.35 LINK C ILE A 61 N MSE A 62 1555 1555 1.33 LINK C MSE A 62 N LEU A 63 1555 1555 1.33 LINK C PHE A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N GLN A 68 1555 1555 1.34 LINK C GLU A 186 N MSE A 187 1555 1555 1.34 LINK C MSE A 187 N ARG A 188 1555 1555 1.33 LINK C LYS A 190 N MSE A 191 1555 1555 1.32 LINK C MSE A 191 N SER A 192 1555 1555 1.32 LINK C ARG A 226 N MSE A 227 1555 1555 1.33 LINK C MSE A 227 N GLY A 228 1555 1555 1.34 LINK C ILE A 237 N MSE A 238 1555 1555 1.31 LINK C MSE A 238 N PRO A 239 1555 1555 1.36 LINK C CYS A 254 N MSE A 255 1555 1555 1.31 LINK C MSE A 255 N VAL A 256 1555 1555 1.32 LINK C ALA A 369 N MSE A 370 1555 1555 1.33 LINK C MSE A 370 N ILE A 371 1555 1555 1.32 SITE 1 AC1 2 ARG A 259 HOH A 834 SITE 1 AC2 4 LYS A 345 GLU A 346 ILE A 347 HOH A 557 SITE 1 AC3 10 ASN A 55 SER A 58 HIS A 105 GLN A 106 SITE 2 AC3 10 ASN A 107 ILE A 108 TYR A 340 HOH A 522 SITE 3 AC3 10 HOH A 692 HOH A 808 SITE 1 AC4 4 SER A 167 ASN A 168 ASP A 215 HOH A 615 CRYST1 135.093 135.093 213.742 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007402 0.004274 0.000000 0.00000 SCALE2 0.000000 0.008547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004679 0.00000