data_2RK0 # _entry.id 2RK0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2RK0 RCSB RCSB044952 WWPDB D_1000044952 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-11002z _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2RK0 _pdbx_database_status.recvd_initial_deposition_date 2007-10-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sugadev, R.' 1 ? 'Burley, S.K.' 2 0000-0002-2487-9713 'Swaminathan, S.' 3 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 4 ? # _citation.id primary _citation.title 'Crystal structure of glyoxylase/bleomycin resistance protein/dioxygenase domain from Frankia sp. EAN1pec.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sugadev, R.' 1 ? primary 'Burley, S.K.' 2 0000-0002-2487-9713 primary 'Swaminathan, S.' 3 ? # _cell.entry_id 2RK0 _cell.length_a 69.445 _cell.length_b 69.445 _cell.length_c 213.958 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2RK0 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glyoxalase/Bleomycin resistance protein/dioxygenase domain' 15232.542 2 ? ? ? ? 2 water nat water 18.015 138 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SLSGVSHVSLTVRDLDISCRWYTEILDWKELVRGRGDTTSFAHGVLPGGLSIVLREHDGGGTDLFDETRPGLDHL SFSVES(MSE)TDLDVLEERLAKAGAAFTPTQELPFGWILAFRDADNIALEA(MSE)LGREGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLSGVSHVSLTVRDLDISCRWYTEILDWKELVRGRGDTTSFAHGVLPGGLSIVLREHDGGGTDLFDETRPGLDHLSFSV ESMTDLDVLEERLAKAGAAFTPTQELPFGWILAFRDADNIALEAMLGREGHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier NYSGXRC-11002z # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 LEU n 1 4 SER n 1 5 GLY n 1 6 VAL n 1 7 SER n 1 8 HIS n 1 9 VAL n 1 10 SER n 1 11 LEU n 1 12 THR n 1 13 VAL n 1 14 ARG n 1 15 ASP n 1 16 LEU n 1 17 ASP n 1 18 ILE n 1 19 SER n 1 20 CYS n 1 21 ARG n 1 22 TRP n 1 23 TYR n 1 24 THR n 1 25 GLU n 1 26 ILE n 1 27 LEU n 1 28 ASP n 1 29 TRP n 1 30 LYS n 1 31 GLU n 1 32 LEU n 1 33 VAL n 1 34 ARG n 1 35 GLY n 1 36 ARG n 1 37 GLY n 1 38 ASP n 1 39 THR n 1 40 THR n 1 41 SER n 1 42 PHE n 1 43 ALA n 1 44 HIS n 1 45 GLY n 1 46 VAL n 1 47 LEU n 1 48 PRO n 1 49 GLY n 1 50 GLY n 1 51 LEU n 1 52 SER n 1 53 ILE n 1 54 VAL n 1 55 LEU n 1 56 ARG n 1 57 GLU n 1 58 HIS n 1 59 ASP n 1 60 GLY n 1 61 GLY n 1 62 GLY n 1 63 THR n 1 64 ASP n 1 65 LEU n 1 66 PHE n 1 67 ASP n 1 68 GLU n 1 69 THR n 1 70 ARG n 1 71 PRO n 1 72 GLY n 1 73 LEU n 1 74 ASP n 1 75 HIS n 1 76 LEU n 1 77 SER n 1 78 PHE n 1 79 SER n 1 80 VAL n 1 81 GLU n 1 82 SER n 1 83 MSE n 1 84 THR n 1 85 ASP n 1 86 LEU n 1 87 ASP n 1 88 VAL n 1 89 LEU n 1 90 GLU n 1 91 GLU n 1 92 ARG n 1 93 LEU n 1 94 ALA n 1 95 LYS n 1 96 ALA n 1 97 GLY n 1 98 ALA n 1 99 ALA n 1 100 PHE n 1 101 THR n 1 102 PRO n 1 103 THR n 1 104 GLN n 1 105 GLU n 1 106 LEU n 1 107 PRO n 1 108 PHE n 1 109 GLY n 1 110 TRP n 1 111 ILE n 1 112 LEU n 1 113 ALA n 1 114 PHE n 1 115 ARG n 1 116 ASP n 1 117 ALA n 1 118 ASP n 1 119 ASN n 1 120 ILE n 1 121 ALA n 1 122 LEU n 1 123 GLU n 1 124 ALA n 1 125 MSE n 1 126 LEU n 1 127 GLY n 1 128 ARG n 1 129 GLU n 1 130 GLY n 1 131 HIS n 1 132 HIS n 1 133 HIS n 1 134 HIS n 1 135 HIS n 1 136 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Frankia _entity_src_gen.pdbx_gene_src_gene Franean1DRAFT_2373 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain EAN1pec _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Frankia sp.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 298653 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pSGX3(BC)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q3W3Y2_9ACTO _struct_ref.pdbx_db_accession Q3W3Y2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SGVSHVSLTVRDLDISCRWYTEILDWKELVRGRGDTTSFAHGVLPGGLSIVLREHDGGGTDLFDETRPGLDHLSFSVESM TDLDVLEERLAKAGAAFTPTQELPFGWILAFRDADNIALEAMLGR ; _struct_ref.pdbx_align_begin 4 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2RK0 A 4 ? 128 ? Q3W3Y2 4 ? 128 ? 4 128 2 1 2RK0 B 4 ? 128 ? Q3W3Y2 4 ? 128 ? 4 128 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2RK0 MSE A 1 ? UNP Q3W3Y2 ? ? 'expression tag' 1 1 1 2RK0 SER A 2 ? UNP Q3W3Y2 ? ? 'expression tag' 2 2 1 2RK0 LEU A 3 ? UNP Q3W3Y2 ? ? 'expression tag' 3 3 1 2RK0 GLU A 129 ? UNP Q3W3Y2 ? ? 'expression tag' 129 4 1 2RK0 GLY A 130 ? UNP Q3W3Y2 ? ? 'expression tag' 130 5 1 2RK0 HIS A 131 ? UNP Q3W3Y2 ? ? 'expression tag' 131 6 1 2RK0 HIS A 132 ? UNP Q3W3Y2 ? ? 'expression tag' 132 7 1 2RK0 HIS A 133 ? UNP Q3W3Y2 ? ? 'expression tag' 133 8 1 2RK0 HIS A 134 ? UNP Q3W3Y2 ? ? 'expression tag' 134 9 1 2RK0 HIS A 135 ? UNP Q3W3Y2 ? ? 'expression tag' 135 10 1 2RK0 HIS A 136 ? UNP Q3W3Y2 ? ? 'expression tag' 136 11 2 2RK0 MSE B 1 ? UNP Q3W3Y2 ? ? 'expression tag' 1 12 2 2RK0 SER B 2 ? UNP Q3W3Y2 ? ? 'expression tag' 2 13 2 2RK0 LEU B 3 ? UNP Q3W3Y2 ? ? 'expression tag' 3 14 2 2RK0 GLU B 129 ? UNP Q3W3Y2 ? ? 'expression tag' 129 15 2 2RK0 GLY B 130 ? UNP Q3W3Y2 ? ? 'expression tag' 130 16 2 2RK0 HIS B 131 ? UNP Q3W3Y2 ? ? 'expression tag' 131 17 2 2RK0 HIS B 132 ? UNP Q3W3Y2 ? ? 'expression tag' 132 18 2 2RK0 HIS B 133 ? UNP Q3W3Y2 ? ? 'expression tag' 133 19 2 2RK0 HIS B 134 ? UNP Q3W3Y2 ? ? 'expression tag' 134 20 2 2RK0 HIS B 135 ? UNP Q3W3Y2 ? ? 'expression tag' 135 21 2 2RK0 HIS B 136 ? UNP Q3W3Y2 ? ? 'expression tag' 136 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2RK0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_percent_sol 49.68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1M HEPES pH 7.5, 1.4M Sodium citrate, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-10-12 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97950 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97950 # _reflns.entry_id 2RK0 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.04 _reflns.number_obs 20212 _reflns.number_all 20212 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.2 _reflns.B_iso_Wilson_estimate 32.0 _reflns.pdbx_redundancy 32.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.04 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 86.5 _reflns_shell.Rmerge_I_obs 0.482 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3 _reflns_shell.pdbx_redundancy 11 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1709 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2RK0 _refine.ls_number_reflns_obs 19369 _refine.ls_number_reflns_all 20212 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF 52343.51 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.97 _refine.ls_d_res_high 2.04 _refine.ls_percent_reflns_obs 95.3 _refine.ls_R_factor_obs 0.215 _refine.ls_R_factor_all 0.234 _refine.ls_R_factor_R_work 0.215 _refine.ls_R_factor_R_free 0.256 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 935 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 25.1 _refine.aniso_B[1][1] 1.41 _refine.aniso_B[2][2] 1.41 _refine.aniso_B[3][3] -2.82 _refine.aniso_B[1][2] 3.14 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.365371 _refine.solvent_model_param_bsol 37.0032 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;Residues listed as missing in Remark 465 are due to lack of electron density. Residues with missing atoms listed in Remark 470 are due to lack of electron density for side chains and modeled as alanines. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2RK0 _refine_analyze.Luzzati_coordinate_error_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs 0.15 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.32 _refine_analyze.Luzzati_sigma_a_free 0.27 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2036 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 138 _refine_hist.number_atoms_total 2174 _refine_hist.d_res_high 2.04 _refine_hist.d_res_low 39.97 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.67 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.04 _refine_ls_shell.d_res_low 2.17 _refine_ls_shell.number_reflns_R_work 2631 _refine_ls_shell.R_factor_R_work 0.237 _refine_ls_shell.percent_reflns_obs 83.1 _refine_ls_shell.R_factor_R_free 0.32 _refine_ls_shell.R_factor_R_free_error 0.030 _refine_ls_shell.percent_reflns_R_free 4.0 _refine_ls_shell.number_reflns_R_free 111 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 ion.param ? 'X-RAY DIFFRACTION' 3 water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2RK0 _struct.title 'Crystal structure of glyoxylase/bleomycin resistance protein/dioxygenase domain from Frankia sp. EAN1pec' _struct.pdbx_descriptor 'Glyoxalase/Bleomycin resistance protein/dioxygenase domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RK0 _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;11002z, Glyoxylase, Bleomycin resistance protein, dioxygenase domain, PSI-II, NewYork Structural GenomiX research consortium (NYSGRC), Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, OXIDOREDUCTASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 15 ? ASP A 28 ? ASP A 15 ASP A 28 1 ? 14 HELX_P HELX_P2 2 SER A 82 ? GLY A 97 ? SER A 82 GLY A 97 1 ? 16 HELX_P HELX_P3 3 ASP B 15 ? ASP B 28 ? ASP B 15 ASP B 28 1 ? 14 HELX_P HELX_P4 4 SER B 82 ? ALA B 96 ? SER B 82 ALA B 96 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A SER 82 C ? ? ? 1_555 A MSE 83 N ? ? A SER 82 A MSE 83 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 83 C ? ? ? 1_555 A THR 84 N ? ? A MSE 83 A THR 84 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A ALA 124 C ? ? ? 1_555 A MSE 125 N ? ? A ALA 124 A MSE 125 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? A MSE 125 C ? ? ? 1_555 A LEU 126 N ? ? A MSE 125 A LEU 126 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale5 covale both ? B SER 82 C ? ? ? 1_555 B MSE 83 N ? ? B SER 82 B MSE 83 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale both ? B MSE 83 C ? ? ? 1_555 B THR 84 N ? ? B MSE 83 B THR 84 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale7 covale both ? B ALA 124 C ? ? ? 1_555 B MSE 125 N ? ? B ALA 124 B MSE 125 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale8 covale both ? B MSE 125 C ? ? ? 1_555 B LEU 126 N ? ? B MSE 125 B LEU 126 1_555 ? ? ? ? ? ? ? 1.322 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 30 ? ARG A 36 ? LYS A 30 ARG A 36 A 2 THR A 40 ? VAL A 46 ? THR A 40 VAL A 46 A 3 SER A 52 ? HIS A 58 ? SER A 52 HIS A 58 A 4 LEU A 3 ? THR A 12 ? LEU A 3 THR A 12 A 5 GLY B 72 ? VAL B 80 ? GLY B 72 VAL B 80 A 6 ALA B 121 ? GLY B 127 ? ALA B 121 GLY B 127 A 7 GLY B 109 ? ARG B 115 ? GLY B 109 ARG B 115 A 8 PHE B 100 ? LEU B 106 ? PHE B 100 LEU B 106 B 1 GLN A 104 ? LEU A 106 ? GLN A 104 LEU A 106 B 2 GLY A 109 ? ARG A 115 ? GLY A 109 ARG A 115 B 3 ALA A 121 ? GLY A 127 ? ALA A 121 GLY A 127 B 4 GLY A 72 ? VAL A 80 ? GLY A 72 VAL A 80 B 5 LEU B 3 ? THR B 12 ? LEU B 3 THR B 12 B 6 SER B 52 ? HIS B 58 ? SER B 52 HIS B 58 B 7 THR B 40 ? VAL B 46 ? THR B 40 VAL B 46 B 8 LYS B 30 ? ARG B 36 ? LYS B 30 ARG B 36 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 32 ? N LEU A 32 O HIS A 44 ? O HIS A 44 A 2 3 N SER A 41 ? N SER A 41 O GLU A 57 ? O GLU A 57 A 3 4 O VAL A 54 ? O VAL A 54 N LEU A 11 ? N LEU A 11 A 4 5 N SER A 10 ? N SER A 10 O ASP B 74 ? O ASP B 74 A 5 6 N PHE B 78 ? N PHE B 78 O GLU B 123 ? O GLU B 123 A 6 7 O LEU B 122 ? O LEU B 122 N PHE B 114 ? N PHE B 114 A 7 8 O GLY B 109 ? O GLY B 109 N LEU B 106 ? N LEU B 106 B 1 2 N LEU A 106 ? N LEU A 106 O GLY A 109 ? O GLY A 109 B 2 3 N PHE A 114 ? N PHE A 114 O LEU A 122 ? O LEU A 122 B 3 4 O GLU A 123 ? O GLU A 123 N PHE A 78 ? N PHE A 78 B 4 5 N ASP A 74 ? N ASP A 74 O SER B 10 ? O SER B 10 B 5 6 N LEU B 11 ? N LEU B 11 O VAL B 54 ? O VAL B 54 B 6 7 O GLU B 57 ? O GLU B 57 N SER B 41 ? N SER B 41 B 7 8 O HIS B 44 ? O HIS B 44 N LEU B 32 ? N LEU B 32 # _database_PDB_matrix.entry_id 2RK0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2RK0 _atom_sites.fract_transf_matrix[1][1] 0.014400 _atom_sites.fract_transf_matrix[1][2] 0.008314 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016628 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004674 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 CYS 20 20 20 CYS CYS A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 TRP 22 22 22 TRP TRP A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 TRP 29 29 29 TRP TRP A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 HIS 44 44 44 HIS HIS A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 HIS 75 75 75 HIS HIS A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 MSE 83 83 83 MSE MSE A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 GLN 104 104 104 GLN GLN A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 TRP 110 110 110 TRP TRP A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 ARG 115 115 115 ARG ARG A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 MSE 125 125 125 MSE MSE A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 HIS 131 131 131 HIS HIS A . n A 1 132 HIS 132 132 132 HIS HIS A . n A 1 133 HIS 133 133 133 HIS HIS A . n A 1 134 HIS 134 134 134 HIS HIS A . n A 1 135 HIS 135 135 135 HIS HIS A . n A 1 136 HIS 136 136 136 HIS HIS A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 LEU 3 3 3 LEU LEU B . n B 1 4 SER 4 4 4 SER SER B . n B 1 5 GLY 5 5 5 GLY GLY B . n B 1 6 VAL 6 6 6 VAL VAL B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 HIS 8 8 8 HIS HIS B . n B 1 9 VAL 9 9 9 VAL VAL B . n B 1 10 SER 10 10 10 SER SER B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 VAL 13 13 13 VAL VAL B . n B 1 14 ARG 14 14 14 ARG ARG B . n B 1 15 ASP 15 15 15 ASP ASP B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 SER 19 19 19 SER SER B . n B 1 20 CYS 20 20 20 CYS CYS B . n B 1 21 ARG 21 21 21 ARG ARG B . n B 1 22 TRP 22 22 22 TRP TRP B . n B 1 23 TYR 23 23 23 TYR TYR B . n B 1 24 THR 24 24 24 THR THR B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 ILE 26 26 26 ILE ILE B . n B 1 27 LEU 27 27 27 LEU LEU B . n B 1 28 ASP 28 28 28 ASP ASP B . n B 1 29 TRP 29 29 29 TRP TRP B . n B 1 30 LYS 30 30 30 LYS LYS B . n B 1 31 GLU 31 31 31 GLU GLU B . n B 1 32 LEU 32 32 32 LEU LEU B . n B 1 33 VAL 33 33 33 VAL VAL B . n B 1 34 ARG 34 34 34 ARG ARG B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 ARG 36 36 36 ARG ARG B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 ASP 38 38 38 ASP ASP B . n B 1 39 THR 39 39 39 THR THR B . n B 1 40 THR 40 40 40 THR THR B . n B 1 41 SER 41 41 41 SER SER B . n B 1 42 PHE 42 42 42 PHE PHE B . n B 1 43 ALA 43 43 43 ALA ALA B . n B 1 44 HIS 44 44 44 HIS HIS B . n B 1 45 GLY 45 45 45 GLY GLY B . n B 1 46 VAL 46 46 46 VAL VAL B . n B 1 47 LEU 47 47 47 LEU LEU B . n B 1 48 PRO 48 48 48 PRO PRO B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 GLY 50 50 50 GLY GLY B . n B 1 51 LEU 51 51 51 LEU LEU B . n B 1 52 SER 52 52 52 SER SER B . n B 1 53 ILE 53 53 53 ILE ILE B . n B 1 54 VAL 54 54 54 VAL VAL B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 ARG 56 56 56 ARG ARG B . n B 1 57 GLU 57 57 57 GLU GLU B . n B 1 58 HIS 58 58 58 HIS HIS B . n B 1 59 ASP 59 59 59 ASP ASP B . n B 1 60 GLY 60 60 60 GLY GLY B . n B 1 61 GLY 61 61 61 GLY GLY B . n B 1 62 GLY 62 62 62 GLY GLY B . n B 1 63 THR 63 63 63 THR THR B . n B 1 64 ASP 64 64 64 ASP ASP B . n B 1 65 LEU 65 65 65 LEU LEU B . n B 1 66 PHE 66 66 66 PHE PHE B . n B 1 67 ASP 67 67 67 ASP ASP B . n B 1 68 GLU 68 68 68 GLU GLU B . n B 1 69 THR 69 69 69 THR THR B . n B 1 70 ARG 70 70 70 ARG ARG B . n B 1 71 PRO 71 71 71 PRO PRO B . n B 1 72 GLY 72 72 72 GLY GLY B . n B 1 73 LEU 73 73 73 LEU LEU B . n B 1 74 ASP 74 74 74 ASP ASP B . n B 1 75 HIS 75 75 75 HIS HIS B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 SER 77 77 77 SER SER B . n B 1 78 PHE 78 78 78 PHE PHE B . n B 1 79 SER 79 79 79 SER SER B . n B 1 80 VAL 80 80 80 VAL VAL B . n B 1 81 GLU 81 81 81 GLU GLU B . n B 1 82 SER 82 82 82 SER SER B . n B 1 83 MSE 83 83 83 MSE MSE B . n B 1 84 THR 84 84 84 THR THR B . n B 1 85 ASP 85 85 85 ASP ASP B . n B 1 86 LEU 86 86 86 LEU LEU B . n B 1 87 ASP 87 87 87 ASP ASP B . n B 1 88 VAL 88 88 88 VAL VAL B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 GLU 90 90 90 GLU GLU B . n B 1 91 GLU 91 91 91 GLU GLU B . n B 1 92 ARG 92 92 92 ARG ARG B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 ALA 94 94 94 ALA ALA B . n B 1 95 LYS 95 95 95 LYS LYS B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 GLY 97 97 97 GLY GLY B . n B 1 98 ALA 98 98 98 ALA ALA B . n B 1 99 ALA 99 99 99 ALA ALA B . n B 1 100 PHE 100 100 100 PHE PHE B . n B 1 101 THR 101 101 101 THR THR B . n B 1 102 PRO 102 102 102 PRO PRO B . n B 1 103 THR 103 103 103 THR THR B . n B 1 104 GLN 104 104 104 GLN GLN B . n B 1 105 GLU 105 105 105 GLU GLU B . n B 1 106 LEU 106 106 106 LEU LEU B . n B 1 107 PRO 107 107 107 PRO PRO B . n B 1 108 PHE 108 108 108 PHE PHE B . n B 1 109 GLY 109 109 109 GLY GLY B . n B 1 110 TRP 110 110 110 TRP TRP B . n B 1 111 ILE 111 111 111 ILE ILE B . n B 1 112 LEU 112 112 112 LEU LEU B . n B 1 113 ALA 113 113 113 ALA ALA B . n B 1 114 PHE 114 114 114 PHE PHE B . n B 1 115 ARG 115 115 115 ARG ARG B . n B 1 116 ASP 116 116 116 ASP ASP B . n B 1 117 ALA 117 117 117 ALA ALA B . n B 1 118 ASP 118 118 118 ASP ASP B . n B 1 119 ASN 119 119 119 ASN ASN B . n B 1 120 ILE 120 120 120 ILE ILE B . n B 1 121 ALA 121 121 121 ALA ALA B . n B 1 122 LEU 122 122 122 LEU LEU B . n B 1 123 GLU 123 123 123 GLU GLU B . n B 1 124 ALA 124 124 124 ALA ALA B . n B 1 125 MSE 125 125 125 MSE MSE B . n B 1 126 LEU 126 126 126 LEU LEU B . n B 1 127 GLY 127 127 127 GLY GLY B . n B 1 128 ARG 128 128 128 ARG ARG B . n B 1 129 GLU 129 129 ? ? ? B . n B 1 130 GLY 130 130 ? ? ? B . n B 1 131 HIS 131 131 ? ? ? B . n B 1 132 HIS 132 132 ? ? ? B . n B 1 133 HIS 133 133 ? ? ? B . n B 1 134 HIS 134 134 ? ? ? B . n B 1 135 HIS 135 135 ? ? ? B . n B 1 136 HIS 136 136 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 137 2 HOH TIP A . C 2 HOH 2 138 4 HOH TIP A . C 2 HOH 3 139 5 HOH TIP A . C 2 HOH 4 140 6 HOH TIP A . C 2 HOH 5 141 10 HOH TIP A . C 2 HOH 6 142 12 HOH TIP A . C 2 HOH 7 143 14 HOH TIP A . C 2 HOH 8 144 15 HOH TIP A . C 2 HOH 9 145 20 HOH TIP A . C 2 HOH 10 146 23 HOH TIP A . C 2 HOH 11 147 24 HOH TIP A . C 2 HOH 12 148 25 HOH TIP A . C 2 HOH 13 149 26 HOH TIP A . C 2 HOH 14 150 27 HOH TIP A . C 2 HOH 15 151 30 HOH TIP A . C 2 HOH 16 152 31 HOH TIP A . C 2 HOH 17 153 32 HOH TIP A . C 2 HOH 18 154 33 HOH TIP A . C 2 HOH 19 155 34 HOH TIP A . C 2 HOH 20 156 36 HOH TIP A . C 2 HOH 21 157 38 HOH TIP A . C 2 HOH 22 158 39 HOH TIP A . C 2 HOH 23 159 40 HOH TIP A . C 2 HOH 24 160 41 HOH TIP A . C 2 HOH 25 161 43 HOH TIP A . C 2 HOH 26 162 44 HOH TIP A . C 2 HOH 27 163 45 HOH TIP A . C 2 HOH 28 164 50 HOH TIP A . C 2 HOH 29 165 51 HOH TIP A . C 2 HOH 30 166 56 HOH TIP A . C 2 HOH 31 167 57 HOH TIP A . C 2 HOH 32 168 58 HOH TIP A . C 2 HOH 33 169 59 HOH TIP A . C 2 HOH 34 170 61 HOH TIP A . C 2 HOH 35 171 62 HOH TIP A . C 2 HOH 36 172 63 HOH TIP A . C 2 HOH 37 173 68 HOH TIP A . C 2 HOH 38 174 69 HOH TIP A . C 2 HOH 39 175 70 HOH TIP A . C 2 HOH 40 176 71 HOH TIP A . C 2 HOH 41 177 72 HOH TIP A . C 2 HOH 42 178 74 HOH TIP A . C 2 HOH 43 179 77 HOH TIP A . C 2 HOH 44 180 78 HOH TIP A . C 2 HOH 45 181 79 HOH TIP A . C 2 HOH 46 182 80 HOH TIP A . C 2 HOH 47 183 81 HOH TIP A . C 2 HOH 48 184 82 HOH TIP A . C 2 HOH 49 185 84 HOH TIP A . C 2 HOH 50 186 85 HOH TIP A . C 2 HOH 51 187 86 HOH TIP A . C 2 HOH 52 188 88 HOH TIP A . C 2 HOH 53 189 89 HOH TIP A . C 2 HOH 54 190 91 HOH TIP A . C 2 HOH 55 191 93 HOH TIP A . C 2 HOH 56 192 94 HOH TIP A . C 2 HOH 57 193 95 HOH TIP A . C 2 HOH 58 194 96 HOH TIP A . C 2 HOH 59 195 99 HOH TIP A . C 2 HOH 60 196 100 HOH TIP A . C 2 HOH 61 197 102 HOH TIP A . C 2 HOH 62 198 105 HOH TIP A . C 2 HOH 63 199 106 HOH TIP A . C 2 HOH 64 200 108 HOH TIP A . C 2 HOH 65 201 110 HOH TIP A . C 2 HOH 66 202 111 HOH TIP A . C 2 HOH 67 203 112 HOH TIP A . C 2 HOH 68 204 114 HOH TIP A . C 2 HOH 69 205 115 HOH TIP A . C 2 HOH 70 206 116 HOH TIP A . C 2 HOH 71 207 117 HOH TIP A . C 2 HOH 72 208 118 HOH TIP A . C 2 HOH 73 209 120 HOH TIP A . C 2 HOH 74 210 121 HOH TIP A . C 2 HOH 75 211 123 HOH TIP A . C 2 HOH 76 212 124 HOH TIP A . C 2 HOH 77 213 125 HOH TIP A . C 2 HOH 78 214 126 HOH TIP A . C 2 HOH 79 215 127 HOH TIP A . C 2 HOH 80 216 128 HOH TIP A . C 2 HOH 81 217 130 HOH TIP A . C 2 HOH 82 218 135 HOH TIP A . C 2 HOH 83 219 136 HOH TIP A . C 2 HOH 84 220 138 HOH TIP A . D 2 HOH 1 137 1 HOH TIP B . D 2 HOH 2 138 3 HOH TIP B . D 2 HOH 3 139 7 HOH TIP B . D 2 HOH 4 140 8 HOH TIP B . D 2 HOH 5 141 9 HOH TIP B . D 2 HOH 6 142 11 HOH TIP B . D 2 HOH 7 143 13 HOH TIP B . D 2 HOH 8 144 16 HOH TIP B . D 2 HOH 9 145 17 HOH TIP B . D 2 HOH 10 146 18 HOH TIP B . D 2 HOH 11 147 19 HOH TIP B . D 2 HOH 12 148 21 HOH TIP B . D 2 HOH 13 149 22 HOH TIP B . D 2 HOH 14 150 28 HOH TIP B . D 2 HOH 15 151 29 HOH TIP B . D 2 HOH 16 152 35 HOH TIP B . D 2 HOH 17 153 37 HOH TIP B . D 2 HOH 18 154 42 HOH TIP B . D 2 HOH 19 155 46 HOH TIP B . D 2 HOH 20 156 47 HOH TIP B . D 2 HOH 21 157 48 HOH TIP B . D 2 HOH 22 158 49 HOH TIP B . D 2 HOH 23 159 52 HOH TIP B . D 2 HOH 24 160 53 HOH TIP B . D 2 HOH 25 161 54 HOH TIP B . D 2 HOH 26 162 55 HOH TIP B . D 2 HOH 27 163 60 HOH TIP B . D 2 HOH 28 164 64 HOH TIP B . D 2 HOH 29 165 65 HOH TIP B . D 2 HOH 30 166 66 HOH TIP B . D 2 HOH 31 167 67 HOH TIP B . D 2 HOH 32 168 73 HOH TIP B . D 2 HOH 33 169 75 HOH TIP B . D 2 HOH 34 170 76 HOH TIP B . D 2 HOH 35 171 83 HOH TIP B . D 2 HOH 36 172 87 HOH TIP B . D 2 HOH 37 173 90 HOH TIP B . D 2 HOH 38 174 92 HOH TIP B . D 2 HOH 39 175 97 HOH TIP B . D 2 HOH 40 176 98 HOH TIP B . D 2 HOH 41 177 101 HOH TIP B . D 2 HOH 42 178 103 HOH TIP B . D 2 HOH 43 179 104 HOH TIP B . D 2 HOH 44 180 107 HOH TIP B . D 2 HOH 45 181 109 HOH TIP B . D 2 HOH 46 182 113 HOH TIP B . D 2 HOH 47 183 119 HOH TIP B . D 2 HOH 48 184 122 HOH TIP B . D 2 HOH 49 185 129 HOH TIP B . D 2 HOH 50 186 131 HOH TIP B . D 2 HOH 51 187 132 HOH TIP B . D 2 HOH 52 188 133 HOH TIP B . D 2 HOH 53 189 134 HOH TIP B . D 2 HOH 54 190 137 HOH TIP B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 83 A MSE 83 ? MET SELENOMETHIONINE 2 A MSE 125 A MSE 125 ? MET SELENOMETHIONINE 3 B MSE 83 B MSE 83 ? MET SELENOMETHIONINE 4 B MSE 125 B MSE 125 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4040 ? 2 'ABSA (A^2)' 10040 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 35.6596666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-02-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 3 'Structure model' citation_author 3 3 'Structure model' struct_conn 4 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.identifier_ORCID' 2 3 'Structure model' '_citation_author.identifier_ORCID' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CBASS 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SHELX phasing . ? 5 SHARP phasing . ? 6 ARP/wARP 'model building' . ? 7 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 33 ? ? -174.97 139.99 2 1 ASP B 64 ? ? -38.09 133.54 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 B MSE 1 ? B MSE 1 3 1 Y 1 B GLU 129 ? B GLU 129 4 1 Y 1 B GLY 130 ? B GLY 130 5 1 Y 1 B HIS 131 ? B HIS 131 6 1 Y 1 B HIS 132 ? B HIS 132 7 1 Y 1 B HIS 133 ? B HIS 133 8 1 Y 1 B HIS 134 ? B HIS 134 9 1 Y 1 B HIS 135 ? B HIS 135 10 1 Y 1 B HIS 136 ? B HIS 136 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #