HEADER TRANSCRIPTION 16-OCT-07 2RKH TITLE CRYSTAL STRUCTURE OF A PUTATIVE APHA-LIKE TRANSCRIPTION FACTOR TITLE 2 (ZP_00208345.1) FROM MAGNETOSPIRILLUM MAGNETOTACTICUM MS-1 AT 2.00 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE APHA-LIKE TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNETOSPIRILLUM MAGNETOTACTICUM; SOURCE 3 ORGANISM_TAXID: 272627; SOURCE 4 STRAIN: MS-1; SOURCE 5 GENE: ZP_00208345.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ZP_00208345.1, PUTATIVE APHA-LIKE TRANSCRIPTION FACTOR, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 30-OCT-24 2RKH 1 REMARK REVDAT 5 24-JUL-19 2RKH 1 REMARK LINK REVDAT 4 25-OCT-17 2RKH 1 REMARK REVDAT 3 13-JUL-11 2RKH 1 VERSN REVDAT 2 24-FEB-09 2RKH 1 VERSN REVDAT 1 30-OCT-07 2RKH 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE APHA-LIKE TRANSCRIPTION JRNL TITL 2 FACTOR (ZP_00208345.1) FROM MAGNETOSPIRILLUM MAGNETOTACTICUM JRNL TITL 3 MS-1 AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 736 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 974 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1211 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 44.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.358 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1253 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 851 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1697 ; 1.456 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2069 ; 1.341 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 168 ; 3.608 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ;24.380 ;21.522 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 220 ;10.605 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.118 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 205 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1396 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 256 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 253 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 782 ; 0.125 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 620 ; 0.139 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 621 ; 0.074 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 46 ; 0.100 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.131 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.062 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 967 ; 2.035 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 340 ; 0.392 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1292 ; 2.621 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 458 ; 4.326 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 401 ; 5.758 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 66 REMARK 3 RESIDUE RANGE : A 75 A 145 REMARK 3 RESIDUE RANGE : A 148 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7400 16.5630 8.6790 REMARK 3 T TENSOR REMARK 3 T11: -0.1713 T22: -0.1163 REMARK 3 T33: -0.0953 T12: -0.0007 REMARK 3 T13: 0.0144 T23: 0.0372 REMARK 3 L TENSOR REMARK 3 L11: 2.1808 L22: 2.2507 REMARK 3 L33: 3.6268 L12: 0.2720 REMARK 3 L13: 0.5678 L23: -1.0641 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: -0.3340 S13: -0.4478 REMARK 3 S21: 0.0246 S22: 0.0160 S23: 0.1797 REMARK 3 S31: 0.2893 S32: -0.2128 S33: -0.0976 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. RAMACHANDRAN OUTLIER RESIDUE 100 LIES IN A POORLY ORDERED REMARK 3 REGION. REMARK 3 5. THERE IS SOME UNIDENTIFIED DENSITY NEAR RESIDUE 37. REMARK 4 REMARK 4 2RKH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044969. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000, 0.9795, 0.9797 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14688 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.364 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.66500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 15.0% GLYCEROL, 0.17M NAOAC, REMARK 280 25.5% PEG 4000, 0.1M TRIS-HCL PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.30000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.31000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.45000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.31000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.15000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.31000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.31000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.45000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.31000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.31000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.15000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION REMARK 300 STATE IN SOLUTION IS SUPPORTED BY SIZE EXCLUSION CHROMATOGRAPHY REMARK 300 WITH STATIC LIGHT SCATTERING. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5810 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 PHE A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 ASP A 67 REMARK 465 ASP A 68 REMARK 465 GLY A 69 REMARK 465 GLN A 70 REMARK 465 GLY A 71 REMARK 465 MSE A 72 REMARK 465 GLU A 73 REMARK 465 ASP A 74 REMARK 465 SER A 146 REMARK 465 ASP A 147 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLN A 24 CG CD OE1 NE2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 ARG A 58 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 59 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 104 CE NZ REMARK 470 GLU A 118 OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLU A 149 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 93 62.99 -103.15 REMARK 500 SER A 100 42.06 96.75 REMARK 500 ASP A 101 58.10 -170.79 REMARK 500 GLU A 149 86.04 59.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 377966 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. REMARK 999 2. THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE REMARK 999 UNIPROT DATABASE AT THE TIME OF DEPOSITION. THE SEQUENCE REMARK 999 INFORMATION IS AVAILABLE AT GENBANK WITH ACCESSION CODE REMARK 999 ZP_00208345.1. DBREF 2RKH A 0 179 PDB 2RKH 2RKH 0 179 SEQRES 1 A 180 GLY MSE PHE ALA ASP ASN THR LEU THR PRO LYS GLU ALA SEQRES 2 A 180 VAL ARG LEU CYS ALA LEU GLY THR ILE ALA SER GLN PRO SEQRES 3 A 180 MSE ARG TYR SER GLU LEU ALA GLY SER VAL ARG HIS PHE SEQRES 4 A 180 THR SER ARG ILE MSE GLY PRO SER LEU GLU LEU MSE GLY SEQRES 5 A 180 ILE SER ILE GLU LEU LEU ARG TYR GLU GLY LEU VAL GLU SEQRES 6 A 180 ALA VAL ASP ASP GLY GLN GLY MSE GLU ASP ASP ALA MSE SEQRES 7 A 180 LEU ALA ILE SER ALA ALA GLY ARG ARG GLU LEU HIS SER SEQRES 8 A 180 LEU LEU THR ALA ARG LEU ARG PRO GLY SER ASP LEU SER SEQRES 9 A 180 LYS LEU VAL VAL ALA LEU LYS MSE ARG PHE LEU GLY LEU SEQRES 10 A 180 MSE GLU ALA GLU GLU ARG ALA HIS GLN ILE ASP LEU LEU SEQRES 11 A 180 ILE GLU GLY VAL ASP SER GLU LEU ALA ARG LEU ALA ASP SEQRES 12 A 180 LEU ARG GLY SER ASP GLY GLU GLY GLY SER ALA LEU ALA SEQRES 13 A 180 ALA TRP LEU ASP HIS ASP MSE ALA LEU LEU GLU SER ARG SEQRES 14 A 180 LEU ALA TRP LEU GLU ASP PHE ARG ALA ARG LEU MODRES 2RKH MSE A 26 MET SELENOMETHIONINE MODRES 2RKH MSE A 43 MET SELENOMETHIONINE MODRES 2RKH MSE A 50 MET SELENOMETHIONINE MODRES 2RKH MSE A 77 MET SELENOMETHIONINE MODRES 2RKH MSE A 111 MET SELENOMETHIONINE MODRES 2RKH MSE A 117 MET SELENOMETHIONINE MODRES 2RKH MSE A 162 MET SELENOMETHIONINE HET MSE A 26 8 HET MSE A 43 8 HET MSE A 50 8 HET MSE A 77 8 HET MSE A 111 8 HET MSE A 117 8 HET MSE A 162 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 HOH *57(H2 O) HELIX 1 1 THR A 8 GLN A 24 1 17 HELIX 2 2 TYR A 28 GLY A 44 1 17 HELIX 3 3 SER A 46 MSE A 50 5 5 HELIX 4 4 ILE A 54 GLU A 60 1 7 HELIX 5 5 SER A 81 THR A 93 1 13 HELIX 6 6 LEU A 102 PHE A 113 1 12 HELIX 7 7 LEU A 114 MSE A 117 5 4 HELIX 8 8 GLU A 118 GLY A 145 1 28 HELIX 9 9 SER A 152 LEU A 179 1 28 SHEET 1 A 3 MSE A 26 ARG A 27 0 SHEET 2 A 3 MSE A 77 ILE A 80 -1 O LEU A 78 N MSE A 26 SHEET 3 A 3 VAL A 63 GLU A 64 -1 N GLU A 64 O ALA A 79 LINK C PRO A 25 N MSE A 26 1555 1555 1.33 LINK C MSE A 26 N ARG A 27 1555 1555 1.33 LINK C ILE A 42 N MSE A 43 1555 1555 1.34 LINK C MSE A 43 N GLY A 44 1555 1555 1.33 LINK C LEU A 49 N MSE A 50 1555 1555 1.34 LINK C MSE A 50 N GLY A 51 1555 1555 1.34 LINK C ALA A 76 N MSE A 77 1555 1555 1.34 LINK C MSE A 77 N LEU A 78 1555 1555 1.34 LINK C LYS A 110 N MSE A 111 1555 1555 1.33 LINK C MSE A 111 N ARG A 112 1555 1555 1.34 LINK C LEU A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N GLU A 118 1555 1555 1.33 LINK C ASP A 161 N MSE A 162 1555 1555 1.33 LINK C MSE A 162 N ALA A 163 1555 1555 1.34 CRYST1 66.620 66.620 92.600 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010799 0.00000