data_2RKN # _entry.id 2RKN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2RKN RCSB RCSB044974 WWPDB D_1000044974 # _pdbx_database_status.entry_id 2RKN _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-10-17 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lascombe, M.B.' 1 'Prange, T.' 2 'Buhot, N.' 3 'Marion, D.' 4 'Bakan, B.' 5 'Lamb, C.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The structure of "defective in induced resistance" protein of Arabidopsis thaliana, DIR1, reveals a new type of lipid transfer protein. ; 'Protein Sci.' 17 1522 1530 2008 PRCIEI US 0961-8368 0795 ? 18552128 10.1110/ps.035972.108 1 'Crystallization of DIR1, a LTP2-like resistance signalling protein from Arabidopsis thaliana' 'ACTA CRYSTALLOGR.,SECT.F' 62 702 704 2006 ? DK 1744-3091 ? ? 16820699 10.1107/S1744309106023748 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lascombe, M.B.' 1 primary 'Bakan, B.' 2 primary 'Buhot, N.' 3 primary 'Marion, D.' 4 primary 'Blein, J.P.' 5 primary 'Larue, V.' 6 primary 'Lamb, C.' 7 primary 'Prange, T.' 8 1 'Lascombe, M.B.' 9 1 'Buhot, N.' 10 1 'Bakan, B.' 11 1 'Marion, D.' 12 1 'Blein, J.P.' 13 1 'Lamb, C.J.' 14 # _cell.entry_id 2RKN _cell.length_a 28.655 _cell.length_b 48.217 _cell.length_c 54.406 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2RKN _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DIR1 protein' 8050.096 1 ? ? 'LTP DEFENSE PROTEIN' ? 2 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 3 non-polymer syn '(7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE' 524.691 2 ? ? ? ? 4 water nat water 18.015 124 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name At5g48485 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC _entity_poly.pdbx_seq_one_letter_code_can AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ILE n 1 3 ASP n 1 4 LEU n 1 5 CYS n 1 6 GLY n 1 7 MET n 1 8 SER n 1 9 GLN n 1 10 ASP n 1 11 GLU n 1 12 LEU n 1 13 ASN n 1 14 GLU n 1 15 CYS n 1 16 LYS n 1 17 PRO n 1 18 ALA n 1 19 VAL n 1 20 SER n 1 21 LYS n 1 22 GLU n 1 23 ASN n 1 24 PRO n 1 25 THR n 1 26 SER n 1 27 PRO n 1 28 SER n 1 29 GLN n 1 30 PRO n 1 31 CYS n 1 32 CYS n 1 33 THR n 1 34 ALA n 1 35 LEU n 1 36 GLN n 1 37 HIS n 1 38 ALA n 1 39 ASP n 1 40 PHE n 1 41 ALA n 1 42 CYS n 1 43 LEU n 1 44 CYS n 1 45 GLY n 1 46 TYR n 1 47 LYS n 1 48 ASN n 1 49 SER n 1 50 PRO n 1 51 TRP n 1 52 LEU n 1 53 GLY n 1 54 SER n 1 55 PHE n 1 56 GLY n 1 57 VAL n 1 58 ASP n 1 59 PRO n 1 60 GLU n 1 61 LEU n 1 62 ALA n 1 63 SER n 1 64 ALA n 1 65 LEU n 1 66 PRO n 1 67 LYS n 1 68 GLN n 1 69 CYS n 1 70 GLY n 1 71 LEU n 1 72 ALA n 1 73 ASN n 1 74 ALA n 1 75 PRO n 1 76 THR n 1 77 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Mouse-ear cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene DIR1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPICZalpha _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8W453_ARATH _struct_ref.pdbx_db_accession Q8W453 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC _struct_ref.pdbx_align_begin 26 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2RKN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 77 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8W453 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 102 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 77 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LP3 non-polymer . '(7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE' ? 'C26 H55 N O7 P 1' 524.691 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.entry_id 2RKN _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.08M acetate buffer pH 6.0, 0.02M ZnSO4, 22% PEG 600 MME, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 1,2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 315' 2006-04-04 Mirrors 2 CCD 'ADSC QUANTUM 210' 2006-11-17 Mirrors # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 1 MAD 'SI(111) MONOCHROMATOR' M x-ray 2 1 'SINGLE WAVELENGTH' 'Diamond (111)' M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.28230 1.0 2 1.28310 1.0 3 1.2770 1.0 4 0.9330 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'ESRF BEAMLINE ID29' ? '1.28230, 1.28310, 1.2770' ESRF ID29 2 SYNCHROTRON 'ESRF BEAMLINE ID14-1' ? 0.9330 ESRF ID14-1 # _reflns.entry_id 2RKN _reflns.observed_criterion_sigma_F 1. _reflns.observed_criterion_sigma_I 1. _reflns.d_resolution_high ? _reflns.d_resolution_low 15. _reflns.number_all ? _reflns.number_obs 10412 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 31.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 1.82 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 2RKN _refine.ls_d_res_high 1.600 _refine.ls_d_res_low 9.920 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.510 _refine.ls_number_reflns_obs 10335 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.192 _refine.ls_R_factor_R_work 0.189 _refine.ls_wR_factor_R_work 0.206 _refine.ls_R_factor_R_free 0.252 _refine.ls_wR_factor_R_free 0.279 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 496 _refine.B_iso_mean 38.162 _refine.aniso_B[1][1] 0.050 _refine.aniso_B[2][2] 0.030 _refine.aniso_B[3][3] -0.070 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.pdbx_overall_ESU_R 0.112 _refine.pdbx_overall_ESU_R_Free 0.121 _refine.overall_SU_ML 0.084 _refine.overall_SU_B 3.614 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 0.0 _refine.ls_number_reflns_all 10412 _refine.ls_R_factor_all 0.192 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 557 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 63 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 744 _refine_hist.d_res_high 1.600 _refine_hist.d_res_low 9.920 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 758 0.020 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1049 2.229 2.077 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 108 4.667 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 28 49.507 27.857 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 122 15.808 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 109 0.129 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 584 0.010 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 428 0.288 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 508 0.328 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 110 0.224 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 3 0.080 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 52 0.284 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 23 0.313 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 3 0.215 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 471 1.567 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 755 2.266 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 314 3.109 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 283 4.768 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 1.640 1.600 725 100.000 693 0.201 32 0.279 . . . . . 'X-RAY DIFFRACTION' 20 1.684 1.640 726 100.000 697 0.198 29 0.272 . . . . . 'X-RAY DIFFRACTION' 20 1.731 1.684 699 100.000 666 0.217 33 0.282 . . . . . 'X-RAY DIFFRACTION' 20 1.783 1.731 693 100.000 653 0.207 40 0.257 . . . . . 'X-RAY DIFFRACTION' 20 1.840 1.783 639 100.000 608 0.192 31 0.228 . . . . . 'X-RAY DIFFRACTION' 20 1.902 1.840 646 100.000 611 0.202 35 0.258 . . . . . 'X-RAY DIFFRACTION' 20 1.971 1.902 626 100.000 595 0.218 31 0.290 . . . . . 'X-RAY DIFFRACTION' 20 2.048 1.971 609 100.000 584 0.203 25 0.265 . . . . . 'X-RAY DIFFRACTION' 20 2.135 2.048 569 100.000 532 0.180 37 0.260 . . . . . 'X-RAY DIFFRACTION' 20 2.234 2.135 554 100.000 528 0.179 26 0.237 . . . . . 'X-RAY DIFFRACTION' 20 2.348 2.234 540 100.000 519 0.175 21 0.215 . . . . . 'X-RAY DIFFRACTION' 20 2.482 2.348 501 100.000 473 0.184 28 0.225 . . . . . 'X-RAY DIFFRACTION' 20 2.641 2.482 482 100.000 460 0.184 22 0.194 . . . . . 'X-RAY DIFFRACTION' 20 2.836 2.641 449 100.000 426 0.184 23 0.290 . . . . . 'X-RAY DIFFRACTION' 20 3.082 2.836 423 100.000 404 0.187 19 0.309 . . . . . 'X-RAY DIFFRACTION' 20 3.405 3.082 390 99.744 371 0.170 18 0.162 . . . . . 'X-RAY DIFFRACTION' 20 3.857 3.405 348 98.563 327 0.170 16 0.276 . . . . . 'X-RAY DIFFRACTION' 20 4.554 3.857 310 95.806 287 0.168 10 0.225 . . . . . 'X-RAY DIFFRACTION' 20 5.853 4.554 259 96.139 235 0.212 14 0.349 . . . . . 'X-RAY DIFFRACTION' 20 9.918 5.853 198 88.889 170 0.267 6 0.219 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 2RKN _struct.title 'X-ray structure of the self-defense and signaling protein DIR1 from Arabidopsis taliana' _struct.pdbx_descriptor 'DIR1 protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RKN _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN, LIPID TRANSPORT' _struct_keywords.text 'LTP, DEFENSE SIGNALING PROTEIN, SIGNALING PROTEIN, LIPID TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 8 ? LYS A 16 ? SER A 8 LYS A 16 1 ? 9 HELX_P HELX_P2 2 PRO A 17 ? SER A 20 ? PRO A 17 SER A 20 5 ? 4 HELX_P HELX_P3 3 SER A 28 ? GLN A 36 ? SER A 28 GLN A 36 1 ? 9 HELX_P HELX_P4 4 ASP A 39 ? GLY A 45 ? ASP A 39 GLY A 45 1 ? 7 HELX_P HELX_P5 5 SER A 49 ? GLY A 56 ? SER A 49 GLY A 56 1 ? 8 HELX_P HELX_P6 6 ASP A 58 ? CYS A 69 ? ASP A 58 CYS A 69 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 42 SG ? ? A CYS 5 A CYS 42 1_555 ? ? ? ? ? ? ? 2.019 ? disulf2 disulf ? ? A CYS 15 SG ? ? ? 1_555 A CYS 31 SG ? ? A CYS 15 A CYS 31 1_555 ? ? ? ? ? ? ? 2.067 ? disulf3 disulf ? ? A CYS 32 SG ? ? ? 1_555 A CYS 69 SG ? ? A CYS 32 A CYS 69 1_555 ? ? ? ? ? ? ? 2.030 ? disulf4 disulf ? ? A CYS 44 SG ? ? ? 1_555 A CYS 77 SG ? ? A CYS 44 A CYS 77 1_555 ? ? ? ? ? ? ? 2.078 ? metalc1 metalc ? ? A ALA 1 N ? ? ? 1_555 B ZN . ZN ? ? A ALA 1 A ZN 201 1_555 ? ? ? ? ? ? ? 1.994 ? metalc2 metalc ? ? A GLU 11 OE1 ? ? ? 1_555 D ZN . ZN ? ? A GLU 11 A ZN 203 1_555 ? ? ? ? ? ? ? 2.102 ? metalc3 metalc ? ? A GLU 11 OE2 ? ? ? 1_555 C ZN . ZN ? ? A GLU 11 A ZN 202 1_555 ? ? ? ? ? ? ? 2.017 ? metalc4 metalc ? ? A GLU 11 OE2 ? ? ? 1_555 D ZN . ZN ? ? A GLU 11 A ZN 203 1_555 ? ? ? ? ? ? ? 2.350 ? metalc5 metalc ? ? A HIS 37 NE2 A ? ? 1_555 C ZN . ZN ? ? A HIS 37 A ZN 202 1_555 ? ? ? ? ? ? ? 2.257 ? metalc6 metalc ? ? A HIS 37 NE2 A ? ? 1_555 D ZN . ZN ? ? A HIS 37 A ZN 203 1_555 ? ? ? ? ? ? ? 2.185 ? metalc7 metalc ? ? A HIS 37 NE2 B ? ? 1_555 C ZN . ZN ? ? A HIS 37 A ZN 202 1_555 ? ? ? ? ? ? ? 1.939 ? metalc8 metalc ? ? A HIS 37 NE2 B ? ? 1_555 D ZN . ZN ? ? A HIS 37 A ZN 203 1_555 ? ? ? ? ? ? ? 2.357 ? metalc9 metalc ? ? C ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 202 A HOH 388 1_555 ? ? ? ? ? ? ? 2.086 ? metalc10 metalc ? ? D ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 203 A HOH 305 1_555 ? ? ? ? ? ? ? 1.839 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 201' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE ZN A 202' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE ZN A 203' AC4 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE LP3 A 101' AC5 Software ? ? ? ? 19 'BINDING SITE FOR RESIDUE LP3 A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ALA A 1 ? ALA A 1 . ? 1_555 ? 2 AC1 4 ASP A 58 ? ASP A 58 . ? 3_655 ? 3 AC1 4 HOH G . ? HOH A 333 . ? 3_655 ? 4 AC1 4 HOH G . ? HOH A 394 . ? 3_655 ? 5 AC2 5 GLU A 11 ? GLU A 11 . ? 1_555 ? 6 AC2 5 HIS A 37 ? HIS A 37 . ? 1_555 ? 7 AC2 5 ASP A 39 ? ASP A 39 . ? 4_455 ? 8 AC2 5 ZN D . ? ZN A 203 . ? 1_555 ? 9 AC2 5 HOH G . ? HOH A 388 . ? 1_555 ? 10 AC3 5 GLU A 11 ? GLU A 11 . ? 1_555 ? 11 AC3 5 HIS A 37 ? HIS A 37 . ? 1_555 ? 12 AC3 5 ASP A 39 ? ASP A 39 . ? 4_455 ? 13 AC3 5 ZN C . ? ZN A 202 . ? 1_555 ? 14 AC3 5 HOH G . ? HOH A 305 . ? 1_555 ? 15 AC4 11 GLN A 9 ? GLN A 9 . ? 1_555 ? 16 AC4 11 LEU A 12 ? LEU A 12 . ? 1_555 ? 17 AC4 11 ASN A 13 ? ASN A 13 . ? 1_555 ? 18 AC4 11 LYS A 16 ? LYS A 16 . ? 1_555 ? 19 AC4 11 PHE A 40 ? PHE A 40 . ? 1_555 ? 20 AC4 11 CYS A 44 ? CYS A 44 . ? 1_555 ? 21 AC4 11 PHE A 55 ? PHE A 55 . ? 1_555 ? 22 AC4 11 ALA A 62 ? ALA A 62 . ? 1_555 ? 23 AC4 11 LEU A 65 ? LEU A 65 . ? 1_555 ? 24 AC4 11 PRO A 75 ? PRO A 75 . ? 1_555 ? 25 AC4 11 LP3 F . ? LP3 A 102 . ? 1_555 ? 26 AC5 19 ILE A 2 ? ILE A 2 . ? 1_555 ? 27 AC5 19 LEU A 4 ? LEU A 4 . ? 1_555 ? 28 AC5 19 GLN A 9 ? GLN A 9 . ? 1_555 ? 29 AC5 19 LEU A 43 ? LEU A 43 . ? 1_555 ? 30 AC5 19 LYS A 47 ? LYS A 47 . ? 1_555 ? 31 AC5 19 TRP A 51 ? TRP A 51 . ? 1_555 ? 32 AC5 19 LEU A 52 ? LEU A 52 . ? 1_555 ? 33 AC5 19 PHE A 55 ? PHE A 55 . ? 1_555 ? 34 AC5 19 PRO A 59 ? PRO A 59 . ? 1_555 ? 35 AC5 19 GLU A 60 ? GLU A 60 . ? 1_555 ? 36 AC5 19 GLU A 60 ? GLU A 60 . ? 3_655 ? 37 AC5 19 LEU A 61 ? LEU A 61 . ? 3_655 ? 38 AC5 19 SER A 63 ? SER A 63 . ? 1_555 ? 39 AC5 19 ALA A 64 ? ALA A 64 . ? 3_655 ? 40 AC5 19 CYS A 77 ? CYS A 77 . ? 1_555 ? 41 AC5 19 LP3 E . ? LP3 A 101 . ? 1_555 ? 42 AC5 19 HOH G . ? HOH A 332 . ? 3_655 ? 43 AC5 19 HOH G . ? HOH A 415 . ? 1_555 ? 44 AC5 19 HOH G . ? HOH A 419 . ? 3_655 ? # _atom_sites.entry_id 2RKN _atom_sites.fract_transf_matrix[1][1] 0.034898 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020740 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018380 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 MET 7 7 7 MET MET A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 HIS 37 37 37 HIS HIS A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 CYS 69 69 69 CYS CYS A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 CYS 77 77 77 CYS CYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 11 ? A GLU 11 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 OE2 ? A GLU 11 ? A GLU 11 ? 1_555 57.3 ? 2 OE1 ? A GLU 11 ? A GLU 11 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 NE2 A A HIS 37 ? A HIS 37 ? 1_555 109.7 ? 3 OE2 ? A GLU 11 ? A GLU 11 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 NE2 A A HIS 37 ? A HIS 37 ? 1_555 98.4 ? 4 OE1 ? A GLU 11 ? A GLU 11 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 NE2 B A HIS 37 ? A HIS 37 ? 1_555 107.4 ? 5 OE2 ? A GLU 11 ? A GLU 11 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 NE2 B A HIS 37 ? A HIS 37 ? 1_555 87.9 ? 6 NE2 A A HIS 37 ? A HIS 37 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 NE2 B A HIS 37 ? A HIS 37 ? 1_555 11.3 ? 7 OE1 ? A GLU 11 ? A GLU 11 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 O ? G HOH . ? A HOH 305 ? 1_555 92.9 ? 8 OE2 ? A GLU 11 ? A GLU 11 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 O ? G HOH . ? A HOH 305 ? 1_555 113.3 ? 9 NE2 A A HIS 37 ? A HIS 37 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 O ? G HOH . ? A HOH 305 ? 1_555 147.8 ? 10 NE2 B A HIS 37 ? A HIS 37 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 O ? G HOH . ? A HOH 305 ? 1_555 156.7 ? 11 OE2 ? A GLU 11 ? A GLU 11 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 NE2 A A HIS 37 ? A HIS 37 ? 1_555 106.8 ? 12 OE2 ? A GLU 11 ? A GLU 11 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 NE2 B A HIS 37 ? A HIS 37 ? 1_555 111.4 ? 13 NE2 A A HIS 37 ? A HIS 37 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 NE2 B A HIS 37 ? A HIS 37 ? 1_555 9.8 ? 14 OE2 ? A GLU 11 ? A GLU 11 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 O ? G HOH . ? A HOH 388 ? 1_555 96.4 ? 15 NE2 A A HIS 37 ? A HIS 37 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 O ? G HOH . ? A HOH 388 ? 1_555 125.7 ? 16 NE2 B A HIS 37 ? A HIS 37 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 O ? G HOH . ? A HOH 388 ? 1_555 116.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-02 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 13.7410 _pdbx_refine_tls.origin_y 5.3490 _pdbx_refine_tls.origin_z 8.2730 _pdbx_refine_tls.T[1][1] -0.1064 _pdbx_refine_tls.T[2][2] -0.2752 _pdbx_refine_tls.T[3][3] -0.2341 _pdbx_refine_tls.T[1][2] 0.0250 _pdbx_refine_tls.T[1][3] 0.0177 _pdbx_refine_tls.T[2][3] 0.0034 _pdbx_refine_tls.L[1][1] 2.1642 _pdbx_refine_tls.L[2][2] 4.4006 _pdbx_refine_tls.L[3][3] 3.3043 _pdbx_refine_tls.L[1][2] 1.6610 _pdbx_refine_tls.L[1][3] 0.6736 _pdbx_refine_tls.L[2][3] -1.2992 _pdbx_refine_tls.S[1][1] 0.0269 _pdbx_refine_tls.S[2][2] 0.0294 _pdbx_refine_tls.S[3][3] -0.0563 _pdbx_refine_tls.S[1][2] 0.0200 _pdbx_refine_tls.S[1][3] -0.1894 _pdbx_refine_tls.S[2][3] -0.1804 _pdbx_refine_tls.S[2][1] 0.1383 _pdbx_refine_tls.S[3][1] -0.0082 _pdbx_refine_tls.S[3][2] 0.0588 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 4 A 19 ? A 4 A 19 'X-RAY DIFFRACTION' ? 2 1 A 28 A 37 ? A 28 A 37 'X-RAY DIFFRACTION' ? 3 1 A 39 A 46 ? A 39 A 46 'X-RAY DIFFRACTION' ? 4 1 A 50 A 55 ? A 50 A 55 'X-RAY DIFFRACTION' ? 5 1 A 58 A 69 ? A 58 A 69 'X-RAY DIFFRACTION' ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MOSFLM . ? package 'A.G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 1 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 2 SHARP . ? package 'de La Fortelle' sharp-develop@globalphasing.com phasing http://babinet.globalphasing.com/sharp/ ? ? 3 SOLOMON . ? program 'Abrahams J. P.' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 REFMAC refmac_5.2.0019 24/04/2001 program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 5 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MxCuBE . ? ? ? ? 'data collection' ? ? ? 7 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NZ A LYS 21 ? A O A HOH 318 ? ? 2.10 2 1 O A HOH 367 ? ? O A HOH 421 ? ? 2.10 3 1 OE2 A GLU 14 ? B O A HOH 371 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OD1 A ASP 58 ? ? 1_555 ZN A ZN 201 ? ? 3_645 1.69 2 1 NZ A LYS 21 ? B 1_555 O A HOH 418 ? ? 2_655 2.16 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 39 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 39 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 39 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 109.59 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation -8.71 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 76 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -64.37 _pdbx_validate_torsion.psi 23.55 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A LP3 101 ? C5 ? E LP3 1 C5 2 1 N 1 A LP3 101 ? C6 ? E LP3 1 C6 3 1 N 1 A LP3 101 ? C7 ? E LP3 1 C7 4 1 N 1 A LP3 101 ? C8 ? E LP3 1 C8 5 1 N 1 A LP3 101 ? N ? E LP3 1 N 6 1 N 1 A LP3 102 ? C5 ? F LP3 1 C5 7 1 N 1 A LP3 102 ? C6 ? F LP3 1 C6 8 1 N 1 A LP3 102 ? C7 ? F LP3 1 C7 9 1 N 1 A LP3 102 ? C8 ? F LP3 1 C8 10 1 N 1 A LP3 102 ? N ? F LP3 1 N # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 '(7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE' LP3 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 201 201 ZN ZN A . C 2 ZN 1 202 202 ZN ZN A . D 2 ZN 1 203 203 ZN ZN A . E 3 LP3 1 101 101 LP3 LP3 A . F 3 LP3 1 102 102 LP3 LP3 A . G 4 HOH 1 301 301 HOH HOH A . G 4 HOH 2 302 302 HOH HOH A . G 4 HOH 3 303 303 HOH HOH A . G 4 HOH 4 304 304 HOH HOH A . G 4 HOH 5 305 305 HOH HOH A . G 4 HOH 6 306 306 HOH HOH A . G 4 HOH 7 307 307 HOH HOH A . G 4 HOH 8 308 308 HOH HOH A . G 4 HOH 9 309 309 HOH HOH A . G 4 HOH 10 310 310 HOH HOH A . G 4 HOH 11 311 311 HOH HOH A . G 4 HOH 12 312 312 HOH HOH A . G 4 HOH 13 313 313 HOH HOH A . G 4 HOH 14 314 314 HOH HOH A . G 4 HOH 15 315 315 HOH HOH A . G 4 HOH 16 316 316 HOH HOH A . G 4 HOH 17 317 317 HOH HOH A . G 4 HOH 18 318 318 HOH HOH A . G 4 HOH 19 319 319 HOH HOH A . G 4 HOH 20 320 320 HOH HOH A . G 4 HOH 21 321 321 HOH HOH A . G 4 HOH 22 322 322 HOH HOH A . G 4 HOH 23 323 323 HOH HOH A . G 4 HOH 24 324 324 HOH HOH A . G 4 HOH 25 325 325 HOH HOH A . G 4 HOH 26 326 326 HOH HOH A . G 4 HOH 27 327 327 HOH HOH A . G 4 HOH 28 328 328 HOH HOH A . G 4 HOH 29 329 329 HOH HOH A . G 4 HOH 30 330 330 HOH HOH A . G 4 HOH 31 331 331 HOH HOH A . G 4 HOH 32 332 332 HOH HOH A . G 4 HOH 33 333 333 HOH HOH A . G 4 HOH 34 334 334 HOH HOH A . G 4 HOH 35 335 335 HOH HOH A . G 4 HOH 36 336 336 HOH HOH A . G 4 HOH 37 337 337 HOH HOH A . G 4 HOH 38 338 338 HOH HOH A . G 4 HOH 39 339 339 HOH HOH A . G 4 HOH 40 340 340 HOH HOH A . G 4 HOH 41 341 341 HOH HOH A . G 4 HOH 42 342 342 HOH HOH A . G 4 HOH 43 343 343 HOH HOH A . G 4 HOH 44 344 344 HOH HOH A . G 4 HOH 45 345 345 HOH HOH A . G 4 HOH 46 346 346 HOH HOH A . G 4 HOH 47 347 347 HOH HOH A . G 4 HOH 48 348 348 HOH HOH A . G 4 HOH 49 349 349 HOH HOH A . G 4 HOH 50 350 350 HOH HOH A . G 4 HOH 51 351 351 HOH HOH A . G 4 HOH 52 352 352 HOH HOH A . G 4 HOH 53 353 353 HOH HOH A . G 4 HOH 54 354 354 HOH HOH A . G 4 HOH 55 355 355 HOH HOH A . G 4 HOH 56 356 356 HOH HOH A . G 4 HOH 57 357 357 HOH HOH A . G 4 HOH 58 358 358 HOH HOH A . G 4 HOH 59 359 359 HOH HOH A . G 4 HOH 60 360 360 HOH HOH A . G 4 HOH 61 361 361 HOH HOH A . G 4 HOH 62 362 362 HOH HOH A . G 4 HOH 63 363 363 HOH HOH A . G 4 HOH 64 364 364 HOH HOH A . G 4 HOH 65 365 365 HOH HOH A . G 4 HOH 66 366 366 HOH HOH A . G 4 HOH 67 367 367 HOH HOH A . G 4 HOH 68 368 368 HOH HOH A . G 4 HOH 69 369 369 HOH HOH A . G 4 HOH 70 370 370 HOH HOH A . G 4 HOH 71 371 371 HOH HOH A . G 4 HOH 72 372 372 HOH HOH A . G 4 HOH 73 373 373 HOH HOH A . G 4 HOH 74 374 374 HOH HOH A . G 4 HOH 75 375 375 HOH HOH A . G 4 HOH 76 376 376 HOH HOH A . G 4 HOH 77 377 377 HOH HOH A . G 4 HOH 78 378 378 HOH HOH A . G 4 HOH 79 379 379 HOH HOH A . G 4 HOH 80 380 380 HOH HOH A . G 4 HOH 81 381 381 HOH HOH A . G 4 HOH 82 382 382 HOH HOH A . G 4 HOH 83 383 383 HOH HOH A . G 4 HOH 84 384 384 HOH HOH A . G 4 HOH 85 385 385 HOH HOH A . G 4 HOH 86 386 386 HOH HOH A . G 4 HOH 87 387 387 HOH HOH A . G 4 HOH 88 388 388 HOH HOH A . G 4 HOH 89 389 389 HOH HOH A . G 4 HOH 90 390 390 HOH HOH A . G 4 HOH 91 391 391 HOH HOH A . G 4 HOH 92 392 392 HOH HOH A . G 4 HOH 93 393 393 HOH HOH A . G 4 HOH 94 394 394 HOH HOH A . G 4 HOH 95 395 395 HOH HOH A . G 4 HOH 96 396 396 HOH HOH A . G 4 HOH 97 397 397 HOH HOH A . G 4 HOH 98 398 398 HOH HOH A . G 4 HOH 99 399 399 HOH HOH A . G 4 HOH 100 400 400 HOH HOH A . G 4 HOH 101 401 401 HOH HOH A . G 4 HOH 102 402 402 HOH HOH A . G 4 HOH 103 403 403 HOH HOH A . G 4 HOH 104 404 404 HOH HOH A . G 4 HOH 105 405 405 HOH HOH A . G 4 HOH 106 406 406 HOH HOH A . G 4 HOH 107 407 407 HOH HOH A . G 4 HOH 108 408 408 HOH HOH A . G 4 HOH 109 409 409 HOH HOH A . G 4 HOH 110 410 410 HOH HOH A . G 4 HOH 111 411 411 HOH HOH A . G 4 HOH 112 412 412 HOH HOH A . G 4 HOH 113 413 413 HOH HOH A . G 4 HOH 114 414 414 HOH HOH A . G 4 HOH 115 415 415 HOH HOH A . G 4 HOH 116 416 416 HOH HOH A . G 4 HOH 117 417 417 HOH HOH A . G 4 HOH 118 418 418 HOH HOH A . G 4 HOH 119 419 419 HOH HOH A . G 4 HOH 120 420 420 HOH HOH A . G 4 HOH 121 421 421 HOH HOH A . G 4 HOH 122 422 422 HOH HOH A . G 4 HOH 123 423 423 HOH HOH A . G 4 HOH 124 424 424 HOH HOH A . #