data_2RKQ # _entry.id 2RKQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2RKQ pdb_00002rkq 10.2210/pdb2rkq/pdb RCSB RCSB044977 ? ? WWPDB D_1000044977 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2RKQ _pdbx_database_status.recvd_initial_deposition_date 2007-10-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Roussel, A.' 1 'Royet, J.' 2 'Leone, P.' 3 'Kellenberger, C.' 4 # _citation.id primary _citation.title 'Crystal structure of Drosophila PGRP-SD suggests binding to DAP-type but not lysine-type peptidoglycan' _citation.journal_abbrev Mol.Immunol. _citation.journal_volume 45 _citation.page_first 2521 _citation.page_last 2530 _citation.year 2008 _citation.journal_id_ASTM MOIMD5 _citation.country UK _citation.journal_id_ISSN 0161-5890 _citation.journal_id_CSD 0921 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18304640 _citation.pdbx_database_id_DOI 10.1016/j.molimm.2008.01.015 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leone, P.' 1 ? primary 'Bischoff, V.' 2 ? primary 'Kellenberger, C.' 3 ? primary 'Hetru, C.' 4 ? primary 'Royet, J.' 5 ? primary 'Roussel, A.' 6 ? # _cell.entry_id 2RKQ _cell.length_a 37.559 _cell.length_b 57.438 _cell.length_c 71.490 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2RKQ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidoglycan-recognition protein-SD' 18415.686 1 ? ? ? ? 2 water nat water 18.015 252 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EVPIVTRAEWNAKPPNGAIDSMVTPLPRAVIAHTAGGACADDVTCSQHMRNLQNFQMSKQKFSDIGYHYLIGGNGKVYEG RSPSQRGAFAGPNNDGSLGIAFIGNFEERAPNKEALDAAKELLEQAVKQAQLVEGYKLLGHRQVSATKSPGEALYALIQQ WPNWSEEML ; _entity_poly.pdbx_seq_one_letter_code_can ;EVPIVTRAEWNAKPPNGAIDSMVTPLPRAVIAHTAGGACADDVTCSQHMRNLQNFQMSKQKFSDIGYHYLIGGNGKVYEG RSPSQRGAFAGPNNDGSLGIAFIGNFEERAPNKEALDAAKELLEQAVKQAQLVEGYKLLGHRQVSATKSPGEALYALIQQ WPNWSEEML ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 VAL n 1 3 PRO n 1 4 ILE n 1 5 VAL n 1 6 THR n 1 7 ARG n 1 8 ALA n 1 9 GLU n 1 10 TRP n 1 11 ASN n 1 12 ALA n 1 13 LYS n 1 14 PRO n 1 15 PRO n 1 16 ASN n 1 17 GLY n 1 18 ALA n 1 19 ILE n 1 20 ASP n 1 21 SER n 1 22 MET n 1 23 VAL n 1 24 THR n 1 25 PRO n 1 26 LEU n 1 27 PRO n 1 28 ARG n 1 29 ALA n 1 30 VAL n 1 31 ILE n 1 32 ALA n 1 33 HIS n 1 34 THR n 1 35 ALA n 1 36 GLY n 1 37 GLY n 1 38 ALA n 1 39 CYS n 1 40 ALA n 1 41 ASP n 1 42 ASP n 1 43 VAL n 1 44 THR n 1 45 CYS n 1 46 SER n 1 47 GLN n 1 48 HIS n 1 49 MET n 1 50 ARG n 1 51 ASN n 1 52 LEU n 1 53 GLN n 1 54 ASN n 1 55 PHE n 1 56 GLN n 1 57 MET n 1 58 SER n 1 59 LYS n 1 60 GLN n 1 61 LYS n 1 62 PHE n 1 63 SER n 1 64 ASP n 1 65 ILE n 1 66 GLY n 1 67 TYR n 1 68 HIS n 1 69 TYR n 1 70 LEU n 1 71 ILE n 1 72 GLY n 1 73 GLY n 1 74 ASN n 1 75 GLY n 1 76 LYS n 1 77 VAL n 1 78 TYR n 1 79 GLU n 1 80 GLY n 1 81 ARG n 1 82 SER n 1 83 PRO n 1 84 SER n 1 85 GLN n 1 86 ARG n 1 87 GLY n 1 88 ALA n 1 89 PHE n 1 90 ALA n 1 91 GLY n 1 92 PRO n 1 93 ASN n 1 94 ASN n 1 95 ASP n 1 96 GLY n 1 97 SER n 1 98 LEU n 1 99 GLY n 1 100 ILE n 1 101 ALA n 1 102 PHE n 1 103 ILE n 1 104 GLY n 1 105 ASN n 1 106 PHE n 1 107 GLU n 1 108 GLU n 1 109 ARG n 1 110 ALA n 1 111 PRO n 1 112 ASN n 1 113 LYS n 1 114 GLU n 1 115 ALA n 1 116 LEU n 1 117 ASP n 1 118 ALA n 1 119 ALA n 1 120 LYS n 1 121 GLU n 1 122 LEU n 1 123 LEU n 1 124 GLU n 1 125 GLN n 1 126 ALA n 1 127 VAL n 1 128 LYS n 1 129 GLN n 1 130 ALA n 1 131 GLN n 1 132 LEU n 1 133 VAL n 1 134 GLU n 1 135 GLY n 1 136 TYR n 1 137 LYS n 1 138 LEU n 1 139 LEU n 1 140 GLY n 1 141 HIS n 1 142 ARG n 1 143 GLN n 1 144 VAL n 1 145 SER n 1 146 ALA n 1 147 THR n 1 148 LYS n 1 149 SER n 1 150 PRO n 1 151 GLY n 1 152 GLU n 1 153 ALA n 1 154 LEU n 1 155 TYR n 1 156 ALA n 1 157 LEU n 1 158 ILE n 1 159 GLN n 1 160 GLN n 1 161 TRP n 1 162 PRO n 1 163 ASN n 1 164 TRP n 1 165 SER n 1 166 GLU n 1 167 GLU n 1 168 MET n 1 169 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'fruit fly' _entity_src_gen.gene_src_genus Drosophila _entity_src_gen.pdbx_gene_src_gene PGRP-SD _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fruit fly' _entity_src_gen.pdbx_host_org_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7227 _entity_src_gen.host_org_genus Drosophila _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell 'Schneider cells' _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector pMT/V5/His _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details 'Drosophila Expression System (Invitrogen)' _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PGPSD_DROME _struct_ref.pdbx_db_accession Q9VS97 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EVPIVTRAEWNAKPPNGAIDSMETPLPRAVIAHTAGGACADDVTCSQHMQNLQNFQMSKQKFSDIGYHYLIGGNGKVYEG RSPSQRGAFAGPNNDGSLGIAFIGNFEERAPNKEALDAAKELLEQAVKQAQLVEGYKLLGHRQVSATKSPGEALYALIQQ WPNWSEEM ; _struct_ref.pdbx_align_begin 19 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2RKQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 168 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9VS97 _struct_ref_seq.db_align_beg 19 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 186 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 11 _struct_ref_seq.pdbx_auth_seq_align_end 177 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2RKQ VAL A 23 ? UNP Q9VS97 GLU 41 'SEE REMARK 999' 32 1 1 2RKQ ARG A 50 ? UNP Q9VS97 GLN 68 'SEE REMARK 999' 59 2 1 2RKQ LEU A 169 ? UNP Q9VS97 ? ? 'expression tag' 178 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2RKQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_percent_sol 41.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '25% PEG-mme 2000, 0.1M MES , pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2005-01-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(311) and Si(111) crystals' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.934 # _reflns.entry_id 2RKQ _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.5 _reflns.d_resolution_low 20 _reflns.number_all 25490 _reflns.number_obs 25380 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.073 _reflns.pdbx_netI_over_sigmaI 10 _reflns.B_iso_Wilson_estimate 18.7 _reflns.pdbx_redundancy 3.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.500 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.326 _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2RKQ _refine.ls_number_reflns_obs 24154 _refine.ls_number_reflns_all 25490 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 99.75 _refine.ls_R_factor_obs 0.15567 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15471 _refine.ls_R_factor_R_free 0.17328 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1273 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.963 _refine.B_iso_mean 17.816 _refine.aniso_B[1][1] -0.54 _refine.aniso_B[2][2] -0.37 _refine.aniso_B[3][3] 0.91 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1S2J' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.070 _refine.pdbx_overall_ESU_R_Free 0.067 _refine.overall_SU_ML 0.041 _refine.overall_SU_B 1.073 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1304 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 252 _refine_hist.number_atoms_total 1556 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 1334 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.363 1.950 ? 1807 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.692 5.000 ? 168 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.020 25.156 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.301 15.000 ? 222 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.010 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.088 0.200 ? 189 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1040 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.207 0.200 ? 672 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.311 0.200 ? 942 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.189 0.200 ? 250 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.255 0.200 ? 58 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.145 0.200 ? 38 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.748 1.500 ? 849 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.248 2.000 ? 1341 'X-RAY DIFFRACTION' ? r_scbond_it 2.281 3.000 ? 535 'X-RAY DIFFRACTION' ? r_scangle_it 3.548 4.500 ? 466 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.539 _refine_ls_shell.number_reflns_R_work 1699 _refine_ls_shell.R_factor_R_work 0.175 _refine_ls_shell.percent_reflns_obs 99.78 _refine_ls_shell.R_factor_R_free 0.194 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1699 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2RKQ _struct.title 'Crystal structure of drosophila peptidoglycan recognition protein SD (PGRP-SD)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RKQ _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'innate immunity; Toll; pattern recognition; PGRP; Drosophila, Glycoprotein, Immune response, Secreted, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 7 ? ASN A 11 ? ARG A 17 ASN A 21 5 ? 5 HELX_P HELX_P2 2 ASP A 41 ? LYS A 59 ? ASP A 50 LYS A 68 1 ? 19 HELX_P HELX_P3 3 ALA A 90 ? ASN A 94 ? ALA A 99 ASN A 103 5 ? 5 HELX_P HELX_P4 4 ASN A 112 ? GLN A 129 ? ASN A 121 GLN A 138 1 ? 18 HELX_P HELX_P5 5 ARG A 142 ? VAL A 144 ? ARG A 151 VAL A 153 5 ? 3 HELX_P HELX_P6 6 GLY A 151 ? GLN A 159 ? GLY A 160 GLN A 168 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 39 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 45 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 48 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 54 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.093 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 24 A . ? THR 33 A PRO 25 A ? PRO 34 A 1 -0.20 2 SER 149 A . ? SER 158 A PRO 150 A ? PRO 159 A 1 9.56 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 4 ? VAL A 5 ? ILE A 14 VAL A 15 A 2 VAL A 77 ? GLU A 79 ? VAL A 86 GLU A 88 A 3 TYR A 69 ? ILE A 71 ? TYR A 78 ILE A 80 A 4 SER A 97 ? PHE A 102 ? SER A 106 PHE A 111 A 5 LEU A 26 ? HIS A 33 ? LEU A 35 HIS A 42 A 6 LEU A 132 ? GLY A 140 ? LEU A 141 GLY A 149 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 5 ? N VAL A 15 O VAL A 77 ? O VAL A 86 A 2 3 O TYR A 78 ? O TYR A 87 N LEU A 70 ? N LEU A 79 A 3 4 N TYR A 69 ? N TYR A 78 O ALA A 101 ? O ALA A 110 A 4 5 O LEU A 98 ? O LEU A 107 N VAL A 30 ? N VAL A 39 A 5 6 N ALA A 29 ? N ALA A 38 O LEU A 139 ? O LEU A 148 # _database_PDB_matrix.entry_id 2RKQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2RKQ _atom_sites.fract_transf_matrix[1][1] 0.026625 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017410 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013988 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 11 11 GLU GLU A . n A 1 2 VAL 2 12 12 VAL VAL A . n A 1 3 PRO 3 13 13 PRO PRO A . n A 1 4 ILE 4 14 14 ILE ILE A . n A 1 5 VAL 5 15 15 VAL VAL A . n A 1 6 THR 6 16 16 THR THR A . n A 1 7 ARG 7 17 17 ARG ARG A . n A 1 8 ALA 8 18 18 ALA ALA A . n A 1 9 GLU 9 19 19 GLU GLU A . n A 1 10 TRP 10 20 20 TRP TRP A . n A 1 11 ASN 11 21 21 ASN ASN A . n A 1 12 ALA 12 22 22 ALA ALA A . n A 1 13 LYS 13 23 23 LYS LYS A . n A 1 14 PRO 14 24 24 PRO PRO A . n A 1 15 PRO 15 25 25 PRO PRO A . n A 1 16 ASN 16 26 26 ASN ASN A . n A 1 17 GLY 17 26 26 GLY GLY A A n A 1 18 ALA 18 27 27 ALA ALA A . n A 1 19 ILE 19 28 28 ILE ILE A . n A 1 20 ASP 20 29 29 ASP ASP A . n A 1 21 SER 21 30 30 SER SER A . n A 1 22 MET 22 31 31 MET MET A . n A 1 23 VAL 23 32 32 VAL VAL A . n A 1 24 THR 24 33 33 THR THR A . n A 1 25 PRO 25 34 34 PRO PRO A . n A 1 26 LEU 26 35 35 LEU LEU A . n A 1 27 PRO 27 36 36 PRO PRO A . n A 1 28 ARG 28 37 37 ARG ARG A . n A 1 29 ALA 29 38 38 ALA ALA A . n A 1 30 VAL 30 39 39 VAL VAL A . n A 1 31 ILE 31 40 40 ILE ILE A . n A 1 32 ALA 32 41 41 ALA ALA A . n A 1 33 HIS 33 42 42 HIS HIS A . n A 1 34 THR 34 43 43 THR THR A . n A 1 35 ALA 35 44 44 ALA ALA A . n A 1 36 GLY 36 45 45 GLY GLY A . n A 1 37 GLY 37 46 46 GLY GLY A . n A 1 38 ALA 38 47 47 ALA ALA A . n A 1 39 CYS 39 48 48 CYS CYS A . n A 1 40 ALA 40 49 49 ALA ALA A . n A 1 41 ASP 41 50 50 ASP ASP A . n A 1 42 ASP 42 51 51 ASP ASP A . n A 1 43 VAL 43 52 52 VAL VAL A . n A 1 44 THR 44 53 53 THR THR A . n A 1 45 CYS 45 54 54 CYS CYS A . n A 1 46 SER 46 55 55 SER SER A . n A 1 47 GLN 47 56 56 GLN GLN A . n A 1 48 HIS 48 57 57 HIS HIS A . n A 1 49 MET 49 58 58 MET MET A . n A 1 50 ARG 50 59 59 ARG ARG A . n A 1 51 ASN 51 60 60 ASN ASN A . n A 1 52 LEU 52 61 61 LEU LEU A . n A 1 53 GLN 53 62 62 GLN GLN A . n A 1 54 ASN 54 63 63 ASN ASN A . n A 1 55 PHE 55 64 64 PHE PHE A . n A 1 56 GLN 56 65 65 GLN GLN A . n A 1 57 MET 57 66 66 MET MET A . n A 1 58 SER 58 67 67 SER SER A . n A 1 59 LYS 59 68 68 LYS LYS A . n A 1 60 GLN 60 69 69 GLN GLN A . n A 1 61 LYS 61 70 70 LYS LYS A . n A 1 62 PHE 62 71 71 PHE PHE A . n A 1 63 SER 63 72 72 SER SER A . n A 1 64 ASP 64 73 73 ASP ASP A . n A 1 65 ILE 65 74 74 ILE ILE A . n A 1 66 GLY 66 75 75 GLY GLY A . n A 1 67 TYR 67 76 76 TYR TYR A . n A 1 68 HIS 68 77 77 HIS HIS A . n A 1 69 TYR 69 78 78 TYR TYR A . n A 1 70 LEU 70 79 79 LEU LEU A . n A 1 71 ILE 71 80 80 ILE ILE A . n A 1 72 GLY 72 81 81 GLY GLY A . n A 1 73 GLY 73 82 82 GLY GLY A . n A 1 74 ASN 74 83 83 ASN ASN A . n A 1 75 GLY 75 84 84 GLY GLY A . n A 1 76 LYS 76 85 85 LYS LYS A . n A 1 77 VAL 77 86 86 VAL VAL A . n A 1 78 TYR 78 87 87 TYR TYR A . n A 1 79 GLU 79 88 88 GLU GLU A . n A 1 80 GLY 80 89 89 GLY GLY A . n A 1 81 ARG 81 90 90 ARG ARG A . n A 1 82 SER 82 91 91 SER SER A . n A 1 83 PRO 83 92 92 PRO PRO A . n A 1 84 SER 84 93 93 SER SER A . n A 1 85 GLN 85 94 94 GLN GLN A . n A 1 86 ARG 86 95 95 ARG ARG A . n A 1 87 GLY 87 96 96 GLY GLY A . n A 1 88 ALA 88 97 97 ALA ALA A . n A 1 89 PHE 89 98 98 PHE PHE A . n A 1 90 ALA 90 99 99 ALA ALA A . n A 1 91 GLY 91 100 100 GLY GLY A . n A 1 92 PRO 92 101 101 PRO PRO A . n A 1 93 ASN 93 102 102 ASN ASN A . n A 1 94 ASN 94 103 103 ASN ASN A . n A 1 95 ASP 95 104 104 ASP ASP A . n A 1 96 GLY 96 105 105 GLY GLY A . n A 1 97 SER 97 106 106 SER SER A . n A 1 98 LEU 98 107 107 LEU LEU A . n A 1 99 GLY 99 108 108 GLY GLY A . n A 1 100 ILE 100 109 109 ILE ILE A . n A 1 101 ALA 101 110 110 ALA ALA A . n A 1 102 PHE 102 111 111 PHE PHE A . n A 1 103 ILE 103 112 112 ILE ILE A . n A 1 104 GLY 104 113 113 GLY GLY A . n A 1 105 ASN 105 114 114 ASN ASN A . n A 1 106 PHE 106 115 115 PHE PHE A . n A 1 107 GLU 107 116 116 GLU GLU A . n A 1 108 GLU 108 117 117 GLU GLU A . n A 1 109 ARG 109 118 118 ARG ARG A . n A 1 110 ALA 110 119 119 ALA ALA A . n A 1 111 PRO 111 120 120 PRO PRO A . n A 1 112 ASN 112 121 121 ASN ASN A . n A 1 113 LYS 113 122 122 LYS LYS A . n A 1 114 GLU 114 123 123 GLU GLU A . n A 1 115 ALA 115 124 124 ALA ALA A . n A 1 116 LEU 116 125 125 LEU LEU A . n A 1 117 ASP 117 126 126 ASP ASP A . n A 1 118 ALA 118 127 127 ALA ALA A . n A 1 119 ALA 119 128 128 ALA ALA A . n A 1 120 LYS 120 129 129 LYS LYS A . n A 1 121 GLU 121 130 130 GLU GLU A . n A 1 122 LEU 122 131 131 LEU LEU A . n A 1 123 LEU 123 132 132 LEU LEU A . n A 1 124 GLU 124 133 133 GLU GLU A . n A 1 125 GLN 125 134 134 GLN GLN A . n A 1 126 ALA 126 135 135 ALA ALA A . n A 1 127 VAL 127 136 136 VAL VAL A . n A 1 128 LYS 128 137 137 LYS LYS A . n A 1 129 GLN 129 138 138 GLN GLN A . n A 1 130 ALA 130 139 139 ALA ALA A . n A 1 131 GLN 131 140 140 GLN GLN A . n A 1 132 LEU 132 141 141 LEU LEU A . n A 1 133 VAL 133 142 142 VAL VAL A . n A 1 134 GLU 134 143 143 GLU GLU A . n A 1 135 GLY 135 144 144 GLY GLY A . n A 1 136 TYR 136 145 145 TYR TYR A . n A 1 137 LYS 137 146 146 LYS LYS A . n A 1 138 LEU 138 147 147 LEU LEU A . n A 1 139 LEU 139 148 148 LEU LEU A . n A 1 140 GLY 140 149 149 GLY GLY A . n A 1 141 HIS 141 150 150 HIS HIS A . n A 1 142 ARG 142 151 151 ARG ARG A . n A 1 143 GLN 143 152 152 GLN GLN A . n A 1 144 VAL 144 153 153 VAL VAL A . n A 1 145 SER 145 154 154 SER SER A . n A 1 146 ALA 146 155 155 ALA ALA A . n A 1 147 THR 147 156 156 THR THR A . n A 1 148 LYS 148 157 157 LYS LYS A . n A 1 149 SER 149 158 158 SER SER A . n A 1 150 PRO 150 159 159 PRO PRO A . n A 1 151 GLY 151 160 160 GLY GLY A . n A 1 152 GLU 152 161 161 GLU GLU A . n A 1 153 ALA 153 162 162 ALA ALA A . n A 1 154 LEU 154 163 163 LEU LEU A . n A 1 155 TYR 155 164 164 TYR TYR A . n A 1 156 ALA 156 165 165 ALA ALA A . n A 1 157 LEU 157 166 166 LEU LEU A . n A 1 158 ILE 158 167 167 ILE ILE A . n A 1 159 GLN 159 168 168 GLN GLN A . n A 1 160 GLN 160 169 169 GLN GLN A . n A 1 161 TRP 161 170 170 TRP TRP A . n A 1 162 PRO 162 171 171 PRO PRO A . n A 1 163 ASN 163 172 172 ASN ASN A . n A 1 164 TRP 164 173 173 TRP TRP A . n A 1 165 SER 165 174 174 SER SER A . n A 1 166 GLU 166 175 175 GLU GLU A . n A 1 167 GLU 167 176 176 GLU GLU A . n A 1 168 MET 168 177 177 MET MET A . n A 1 169 LEU 169 178 178 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 179 1 HOH HOH A . B 2 HOH 2 180 2 HOH HOH A . B 2 HOH 3 181 3 HOH HOH A . B 2 HOH 4 182 4 HOH HOH A . B 2 HOH 5 183 5 HOH HOH A . B 2 HOH 6 184 6 HOH HOH A . B 2 HOH 7 185 7 HOH HOH A . B 2 HOH 8 186 8 HOH HOH A . B 2 HOH 9 187 9 HOH HOH A . B 2 HOH 10 188 10 HOH HOH A . B 2 HOH 11 189 11 HOH HOH A . B 2 HOH 12 190 12 HOH HOH A . B 2 HOH 13 191 13 HOH HOH A . B 2 HOH 14 192 14 HOH HOH A . B 2 HOH 15 193 15 HOH HOH A . B 2 HOH 16 194 16 HOH HOH A . B 2 HOH 17 195 17 HOH HOH A . B 2 HOH 18 196 18 HOH HOH A . B 2 HOH 19 197 19 HOH HOH A . B 2 HOH 20 198 20 HOH HOH A . B 2 HOH 21 199 21 HOH HOH A . B 2 HOH 22 200 22 HOH HOH A . B 2 HOH 23 201 23 HOH HOH A . B 2 HOH 24 202 24 HOH HOH A . B 2 HOH 25 203 25 HOH HOH A . B 2 HOH 26 204 26 HOH HOH A . B 2 HOH 27 205 27 HOH HOH A . B 2 HOH 28 206 28 HOH HOH A . B 2 HOH 29 207 29 HOH HOH A . B 2 HOH 30 208 30 HOH HOH A . B 2 HOH 31 209 31 HOH HOH A . B 2 HOH 32 210 32 HOH HOH A . B 2 HOH 33 211 33 HOH HOH A . B 2 HOH 34 212 34 HOH HOH A . B 2 HOH 35 213 35 HOH HOH A . B 2 HOH 36 214 36 HOH HOH A . B 2 HOH 37 215 37 HOH HOH A . B 2 HOH 38 216 38 HOH HOH A . B 2 HOH 39 217 39 HOH HOH A . B 2 HOH 40 218 40 HOH HOH A . B 2 HOH 41 219 41 HOH HOH A . B 2 HOH 42 220 42 HOH HOH A . B 2 HOH 43 221 43 HOH HOH A . B 2 HOH 44 222 44 HOH HOH A . B 2 HOH 45 223 45 HOH HOH A . B 2 HOH 46 224 46 HOH HOH A . B 2 HOH 47 225 47 HOH HOH A . B 2 HOH 48 226 48 HOH HOH A . B 2 HOH 49 227 49 HOH HOH A . B 2 HOH 50 228 50 HOH HOH A . B 2 HOH 51 229 51 HOH HOH A . B 2 HOH 52 230 52 HOH HOH A . B 2 HOH 53 231 53 HOH HOH A . B 2 HOH 54 232 54 HOH HOH A . B 2 HOH 55 233 55 HOH HOH A . B 2 HOH 56 234 56 HOH HOH A . B 2 HOH 57 235 57 HOH HOH A . B 2 HOH 58 236 58 HOH HOH A . B 2 HOH 59 237 59 HOH HOH A . B 2 HOH 60 238 60 HOH HOH A . B 2 HOH 61 239 61 HOH HOH A . B 2 HOH 62 240 62 HOH HOH A . B 2 HOH 63 241 63 HOH HOH A . B 2 HOH 64 242 64 HOH HOH A . B 2 HOH 65 243 65 HOH HOH A . B 2 HOH 66 244 66 HOH HOH A . B 2 HOH 67 245 67 HOH HOH A . B 2 HOH 68 246 68 HOH HOH A . B 2 HOH 69 247 69 HOH HOH A . B 2 HOH 70 248 70 HOH HOH A . B 2 HOH 71 249 71 HOH HOH A . B 2 HOH 72 250 72 HOH HOH A . B 2 HOH 73 251 73 HOH HOH A . B 2 HOH 74 252 74 HOH HOH A . B 2 HOH 75 253 75 HOH HOH A . B 2 HOH 76 254 76 HOH HOH A . B 2 HOH 77 255 77 HOH HOH A . B 2 HOH 78 256 78 HOH HOH A . B 2 HOH 79 257 79 HOH HOH A . B 2 HOH 80 258 80 HOH HOH A . B 2 HOH 81 259 81 HOH HOH A . B 2 HOH 82 260 82 HOH HOH A . B 2 HOH 83 261 83 HOH HOH A . B 2 HOH 84 262 84 HOH HOH A . B 2 HOH 85 263 85 HOH HOH A . B 2 HOH 86 264 86 HOH HOH A . B 2 HOH 87 265 87 HOH HOH A . B 2 HOH 88 266 88 HOH HOH A . B 2 HOH 89 267 89 HOH HOH A . B 2 HOH 90 268 90 HOH HOH A . B 2 HOH 91 269 91 HOH HOH A . B 2 HOH 92 270 92 HOH HOH A . B 2 HOH 93 271 93 HOH HOH A . B 2 HOH 94 272 94 HOH HOH A . B 2 HOH 95 273 95 HOH HOH A . B 2 HOH 96 274 96 HOH HOH A . B 2 HOH 97 275 97 HOH HOH A . B 2 HOH 98 276 98 HOH HOH A . B 2 HOH 99 277 99 HOH HOH A . B 2 HOH 100 278 100 HOH HOH A . B 2 HOH 101 279 101 HOH HOH A . B 2 HOH 102 280 102 HOH HOH A . B 2 HOH 103 281 103 HOH HOH A . B 2 HOH 104 282 104 HOH HOH A . B 2 HOH 105 283 105 HOH HOH A . B 2 HOH 106 284 106 HOH HOH A . B 2 HOH 107 285 107 HOH HOH A . B 2 HOH 108 286 108 HOH HOH A . B 2 HOH 109 287 109 HOH HOH A . B 2 HOH 110 288 110 HOH HOH A . B 2 HOH 111 289 111 HOH HOH A . B 2 HOH 112 290 112 HOH HOH A . B 2 HOH 113 291 113 HOH HOH A . B 2 HOH 114 292 114 HOH HOH A . B 2 HOH 115 293 115 HOH HOH A . B 2 HOH 116 294 116 HOH HOH A . B 2 HOH 117 295 117 HOH HOH A . B 2 HOH 118 296 118 HOH HOH A . B 2 HOH 119 297 119 HOH HOH A . B 2 HOH 120 298 120 HOH HOH A . B 2 HOH 121 299 121 HOH HOH A . B 2 HOH 122 300 122 HOH HOH A . B 2 HOH 123 301 123 HOH HOH A . B 2 HOH 124 302 124 HOH HOH A . B 2 HOH 125 303 125 HOH HOH A . B 2 HOH 126 304 126 HOH HOH A . B 2 HOH 127 305 127 HOH HOH A . B 2 HOH 128 306 128 HOH HOH A . B 2 HOH 129 307 129 HOH HOH A . B 2 HOH 130 308 130 HOH HOH A . B 2 HOH 131 309 131 HOH HOH A . B 2 HOH 132 310 132 HOH HOH A . B 2 HOH 133 311 133 HOH HOH A . B 2 HOH 134 312 134 HOH HOH A . B 2 HOH 135 313 135 HOH HOH A . B 2 HOH 136 314 136 HOH HOH A . B 2 HOH 137 315 137 HOH HOH A . B 2 HOH 138 316 138 HOH HOH A . B 2 HOH 139 317 139 HOH HOH A . B 2 HOH 140 318 140 HOH HOH A . B 2 HOH 141 319 141 HOH HOH A . B 2 HOH 142 320 142 HOH HOH A . B 2 HOH 143 321 143 HOH HOH A . B 2 HOH 144 322 144 HOH HOH A . B 2 HOH 145 323 145 HOH HOH A . B 2 HOH 146 324 146 HOH HOH A . B 2 HOH 147 325 147 HOH HOH A . B 2 HOH 148 326 148 HOH HOH A . B 2 HOH 149 327 149 HOH HOH A . B 2 HOH 150 328 150 HOH HOH A . B 2 HOH 151 329 151 HOH HOH A . B 2 HOH 152 330 152 HOH HOH A . B 2 HOH 153 331 153 HOH HOH A . B 2 HOH 154 332 154 HOH HOH A . B 2 HOH 155 333 155 HOH HOH A . B 2 HOH 156 334 156 HOH HOH A . B 2 HOH 157 335 157 HOH HOH A . B 2 HOH 158 336 158 HOH HOH A . B 2 HOH 159 337 159 HOH HOH A . B 2 HOH 160 338 160 HOH HOH A . B 2 HOH 161 339 161 HOH HOH A . B 2 HOH 162 340 162 HOH HOH A . B 2 HOH 163 341 163 HOH HOH A . B 2 HOH 164 342 164 HOH HOH A . B 2 HOH 165 343 165 HOH HOH A . B 2 HOH 166 344 166 HOH HOH A . B 2 HOH 167 345 167 HOH HOH A . B 2 HOH 168 346 168 HOH HOH A . B 2 HOH 169 347 169 HOH HOH A . B 2 HOH 170 348 170 HOH HOH A . B 2 HOH 171 349 171 HOH HOH A . B 2 HOH 172 350 172 HOH HOH A . B 2 HOH 173 351 173 HOH HOH A . B 2 HOH 174 352 174 HOH HOH A . B 2 HOH 175 353 175 HOH HOH A . B 2 HOH 176 354 176 HOH HOH A . B 2 HOH 177 355 177 HOH HOH A . B 2 HOH 178 356 178 HOH HOH A . B 2 HOH 179 357 179 HOH HOH A . B 2 HOH 180 358 180 HOH HOH A . B 2 HOH 181 359 181 HOH HOH A . B 2 HOH 182 360 182 HOH HOH A . B 2 HOH 183 361 183 HOH HOH A . B 2 HOH 184 362 184 HOH HOH A . B 2 HOH 185 363 185 HOH HOH A . B 2 HOH 186 364 186 HOH HOH A . B 2 HOH 187 365 187 HOH HOH A . B 2 HOH 188 366 188 HOH HOH A . B 2 HOH 189 367 189 HOH HOH A . B 2 HOH 190 368 190 HOH HOH A . B 2 HOH 191 369 191 HOH HOH A . B 2 HOH 192 370 192 HOH HOH A . B 2 HOH 193 371 193 HOH HOH A . B 2 HOH 194 372 194 HOH HOH A . B 2 HOH 195 373 195 HOH HOH A . B 2 HOH 196 374 196 HOH HOH A . B 2 HOH 197 375 197 HOH HOH A . B 2 HOH 198 376 198 HOH HOH A . B 2 HOH 199 377 199 HOH HOH A . B 2 HOH 200 378 200 HOH HOH A . B 2 HOH 201 379 201 HOH HOH A . B 2 HOH 202 380 202 HOH HOH A . B 2 HOH 203 381 203 HOH HOH A . B 2 HOH 204 382 204 HOH HOH A . B 2 HOH 205 383 205 HOH HOH A . B 2 HOH 206 384 206 HOH HOH A . B 2 HOH 207 385 207 HOH HOH A . B 2 HOH 208 386 208 HOH HOH A . B 2 HOH 209 387 209 HOH HOH A . B 2 HOH 210 388 210 HOH HOH A . B 2 HOH 211 389 211 HOH HOH A . B 2 HOH 212 390 212 HOH HOH A . B 2 HOH 213 391 213 HOH HOH A . B 2 HOH 214 392 214 HOH HOH A . B 2 HOH 215 393 215 HOH HOH A . B 2 HOH 216 394 216 HOH HOH A . B 2 HOH 217 395 217 HOH HOH A . B 2 HOH 218 396 218 HOH HOH A . B 2 HOH 219 397 219 HOH HOH A . B 2 HOH 220 398 220 HOH HOH A . B 2 HOH 221 399 221 HOH HOH A . B 2 HOH 222 400 222 HOH HOH A . B 2 HOH 223 401 223 HOH HOH A . B 2 HOH 224 402 224 HOH HOH A . B 2 HOH 225 403 225 HOH HOH A . B 2 HOH 226 404 226 HOH HOH A . B 2 HOH 227 405 227 HOH HOH A . B 2 HOH 228 406 228 HOH HOH A . B 2 HOH 229 407 229 HOH HOH A . B 2 HOH 230 408 230 HOH HOH A . B 2 HOH 231 409 231 HOH HOH A . B 2 HOH 232 410 232 HOH HOH A . B 2 HOH 233 411 233 HOH HOH A . B 2 HOH 234 412 234 HOH HOH A . B 2 HOH 235 413 235 HOH HOH A . B 2 HOH 236 414 236 HOH HOH A . B 2 HOH 237 415 237 HOH HOH A . B 2 HOH 238 416 238 HOH HOH A . B 2 HOH 239 417 239 HOH HOH A . B 2 HOH 240 418 240 HOH HOH A . B 2 HOH 241 419 241 HOH HOH A . B 2 HOH 242 420 242 HOH HOH A . B 2 HOH 243 421 243 HOH HOH A . B 2 HOH 244 422 244 HOH HOH A . B 2 HOH 245 423 245 HOH HOH A . B 2 HOH 246 424 246 HOH HOH A . B 2 HOH 247 425 247 HOH HOH A . B 2 HOH 248 426 248 HOH HOH A . B 2 HOH 249 427 249 HOH HOH A . B 2 HOH 250 428 250 HOH HOH A . B 2 HOH 251 429 251 HOH HOH A . B 2 HOH 252 430 252 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 ADSC 'data collection' Quantum ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 AMoRE phasing . ? 5 # _pdbx_entry_details.entry_id 2RKQ _pdbx_entry_details.sequence_details ;THE SEQUENCE IS BASED ON REFERENCE 1 IN THE DATABASE, PGPSD _DROME. A32VAL AND A59ARG ARE VARIENTS OF PGPSD_DROME. THE SEQUENCE COMPRISING THE SIGNAL PEPTIDE AND THE C-TERMINAL EXTENSION IS: MTWIGLLIVGLTAIAVQGEVPIVTRAEWNAKPPNGAIDSMETPLPRAVIAHTAGGACAD DVTCSQHMQNLQNFQMSKQKFSDIGYHYLIGGNGKVYEGRSPSQRGAFAGPNNDGSLGI AFIGNFEERAPNKEALDAAKELLEQAVKQAQLVEGYKLLGHRQVSATKSPGEALYALIQ QWPNWSEEMLESRGPFEGKPIPNPLLGLDSTRTGHHHHHH. THE SEQUENCE INSERTED INTO THE EXPRESSION VECTOR CONTAINS A SIGNAL PEPTIDE AND TWO EXPRESSION TAGS AT THE C-TERMINAL END. THE SIGNAL PEPTIDE IS CLEAVED UPON EXPORTATION. A PART OF THE C-TERMINAL EXTENSION IS LOST AFTER PURIFICATION AND CONCENTRATION, AS SEEN BY SDS-PAGE GEL AND WESTERN BLOT. THEREFORE THERE IS NO EXACT INFORMATIONS ON THE N AND C TERMINUS. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 382 ? ? O A HOH 384 ? ? 1.92 2 1 O A HOH 383 ? ? O A HOH 384 ? ? 1.97 3 1 ND2 A ASN 26 ? ? O A HOH 204 ? ? 2.11 4 1 OG A SER 67 ? B O A HOH 395 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 251 ? ? 1_555 O A HOH 252 ? ? 1_455 2.14 2 1 O A HOH 250 ? ? 1_555 O A HOH 251 ? ? 1_655 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 44 ? ? 77.72 -1.41 2 1 PHE A 98 ? ? -146.57 -9.64 3 1 ALA A 99 ? ? -144.68 17.21 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1S2J _pdbx_initial_refinement_model.details 'PDB ENTRY 1S2J' #