HEADER HYDROLASE 18-OCT-07 2RKW TITLE INTERMEDIATE POSITION OF ATP ON ITS TRAIL TO THE BINDING POCKET INSIDE TITLE 2 THE SUBUNIT B MUTANT R416W OF THE ENERGY CONVERTER A1AO ATP SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: V-TYPE ATP SYNTHASE BETA CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: V-TYPE ATPASE SUBUNIT B; COMPND 5 EC: 3.6.3.14; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI; SOURCE 3 ORGANISM_TAXID: 2209; SOURCE 4 STRAIN: GO1; SOURCE 5 GENE: ATPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET9D-HIS6 KEYWDS HYDROLASE, ATP SYNTHESIS, HYDROGEN ION TRANSPORT, ION TRANSPORT, KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.KUMAR,M.S.S.MANIMEKALAI,A.M.BALAKRISHNA,C.HUNKE,G.GRUBER REVDAT 6 25-OCT-23 2RKW 1 REMARK REVDAT 5 10-NOV-21 2RKW 1 SEQADV REVDAT 4 25-OCT-17 2RKW 1 REMARK REVDAT 3 16-JUN-09 2RKW 1 JRNL REVDAT 2 24-FEB-09 2RKW 1 VERSN REVDAT 1 09-SEP-08 2RKW 0 JRNL AUTH A.KUMAR,M.S.S.MANIMEKALAI,A.M.BALAKRISHNA,C.HUNKE,S.WEIGELT, JRNL AUTH 2 N.SEWALD,G.GRUBER JRNL TITL SPECTROSCOPIC AND CRYSTALLOGRAPHIC STUDIES OF THE MUTANT JRNL TITL 2 R416W GIVE INSIGHT INTO THE NUCLEOTIDE BINDING TRAITS OF JRNL TITL 3 SUBUNIT B OF THE A1AO ATP SYNTHASE JRNL REF PROTEINS V. 75 807 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19003877 JRNL DOI 10.1002/PROT.22289 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.B.SCHAFER,S.M.BAILER,M.G.DUSER,M.BORSCH,R.A.BERNAL, REMARK 1 AUTH 2 D.STOCK,G.GRUBER REMARK 1 TITL CRYSTAL STRUCTURE OF THE ARCHAEAL A1AO ATP SYNTHASE SUBUNIT REMARK 1 TITL 2 B FROM METHANOSARCINA MAZEI GO1: IMPLICATIONS OF REMARK 1 TITL 3 NUCLEOTIDE-BINDING DIFFERENCES IN THE MAJOR A1AO SUBUNITS A REMARK 1 TITL 4 AND B REMARK 1 REF J.MOL.BIOL. V. 358 725 2006 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 16563431 REMARK 1 DOI 10.1016/J.JMB.2006.02.057 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 19988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.271 REMARK 3 FREE R VALUE : 0.330 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1033 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 923 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3700 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.4500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.558 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.593 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.858 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6638 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9005 ; 1.360 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 838 ; 7.295 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 297 ;38.656 ;24.108 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1118 ;21.035 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;14.095 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1021 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5045 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3690 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4527 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 290 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 78 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.028 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4285 ; 0.335 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6749 ; 0.609 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2607 ; 0.537 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2256 ; 0.894 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20054 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2C61 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% GLYCEROL, 20% PEG 400, 0.1M SODIUM REMARK 280 CHLORIDE, 0.1M SODIUM CITRATE (PH 5.0), VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.52600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.97050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.04700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.97050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.52600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.04700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 LYS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 TYR A 5 REMARK 465 LYS A 6 REMARK 465 THR A 7 REMARK 465 ILE A 8 REMARK 465 THR A 9 REMARK 465 GLN A 10 REMARK 465 VAL A 56 REMARK 465 PHE A 57 REMARK 465 GLU A 58 REMARK 465 GLY A 59 REMARK 465 THR A 60 REMARK 465 GLY A 61 REMARK 465 GLY A 62 REMARK 465 LEU A 63 REMARK 465 ASP A 64 REMARK 465 LYS A 65 REMARK 465 ASP A 66 REMARK 465 CYS A 67 REMARK 465 GLY A 68 REMARK 465 VAL A 69 REMARK 465 ALA A 261 REMARK 465 ALA A 262 REMARK 465 ARG A 263 REMARK 465 ASN A 264 REMARK 465 GLU A 265 REMARK 465 VAL A 266 REMARK 465 PRO A 267 REMARK 465 GLY A 268 REMARK 465 ARG A 269 REMARK 465 ARG A 270 REMARK 465 GLY A 271 REMARK 465 LYS A 458 REMARK 465 ALA A 459 REMARK 465 LYS A 460 REMARK 465 MET B -8 REMARK 465 LYS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 LYS B 3 REMARK 465 GLU B 4 REMARK 465 TYR B 5 REMARK 465 LYS B 6 REMARK 465 THR B 7 REMARK 465 ILE B 8 REMARK 465 THR B 9 REMARK 465 GLY B 59 REMARK 465 THR B 60 REMARK 465 GLY B 61 REMARK 465 GLY B 62 REMARK 465 LEU B 63 REMARK 465 ASP B 64 REMARK 465 LYS B 65 REMARK 465 ASP B 66 REMARK 465 CYS B 67 REMARK 465 GLY B 68 REMARK 465 VAL B 69 REMARK 465 ILE B 70 REMARK 465 ALA B 262 REMARK 465 ARG B 263 REMARK 465 ASN B 264 REMARK 465 GLU B 265 REMARK 465 VAL B 266 REMARK 465 PRO B 267 REMARK 465 GLY B 268 REMARK 465 ARG B 269 REMARK 465 ARG B 270 REMARK 465 GLY B 271 REMARK 465 TYR B 272 REMARK 465 PRO B 273 REMARK 465 GLY B 274 REMARK 465 TYR B 275 REMARK 465 LYS B 458 REMARK 465 ALA B 459 REMARK 465 LYS B 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 14 C - N - CA ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 -78.55 -63.39 REMARK 500 THR A 21 -62.87 -107.49 REMARK 500 THR A 38 -121.01 -133.60 REMARK 500 ARG A 41 62.80 -64.93 REMARK 500 SER A 48 -113.45 -143.75 REMARK 500 ALA A 49 -123.92 -76.42 REMARK 500 ASP A 50 35.30 -93.60 REMARK 500 THR A 72 98.60 53.92 REMARK 500 GLU A 74 -116.86 -107.35 REMARK 500 ASP A 83 40.00 -101.20 REMARK 500 LEU A 89 -149.64 -120.25 REMARK 500 SER A 90 -52.67 -163.83 REMARK 500 GLU A 94 -82.27 150.07 REMARK 500 GLN A 106 127.61 -173.54 REMARK 500 MET A 115 -69.56 -104.15 REMARK 500 LYS A 124 -71.76 -128.90 REMARK 500 PHE A 126 142.11 74.92 REMARK 500 ARG A 142 101.39 -43.50 REMARK 500 ALA A 175 155.02 -47.22 REMARK 500 ALA A 213 -9.56 -57.97 REMARK 500 GLU A 237 -20.16 73.46 REMARK 500 HIS A 238 -3.15 -144.33 REMARK 500 ALA A 255 -37.94 -171.42 REMARK 500 TYR A 275 115.29 -34.35 REMARK 500 MET A 276 -27.88 -142.44 REMARK 500 TYR A 277 -174.84 -63.54 REMARK 500 THR A 278 -69.70 70.31 REMARK 500 ASP A 308 84.38 -56.00 REMARK 500 ASP A 309 -43.48 -168.06 REMARK 500 PRO A 313 64.97 0.82 REMARK 500 ILE A 314 -100.04 -111.80 REMARK 500 PRO A 315 -131.43 -95.97 REMARK 500 THR A 322 -0.77 -144.55 REMARK 500 PRO A 339 -85.22 -15.39 REMARK 500 ILE A 355 -163.05 -76.21 REMARK 500 THR A 360 -84.93 -132.95 REMARK 500 PHE A 411 -65.20 -98.55 REMARK 500 ARG A 413 126.72 -39.55 REMARK 500 PRO A 437 97.37 -61.25 REMARK 500 ASN A 439 25.36 -72.03 REMARK 500 GLN A 440 -49.73 -153.36 REMARK 500 ARG A 443 -1.91 53.48 REMARK 500 ASP A 445 -68.56 -16.62 REMARK 500 ASN A 446 104.55 -47.97 REMARK 500 LYS A 447 -28.90 77.26 REMARK 500 HIS A 453 135.70 71.96 REMARK 500 ALA A 455 116.95 -33.65 REMARK 500 PRO B 14 168.51 -17.49 REMARK 500 LEU B 15 65.66 -165.54 REMARK 500 LYS B 20 101.34 -59.91 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE B 314 PRO B 315 -32.12 REMARK 500 PRO B 315 ASP B 316 147.89 REMARK 500 LEU B 344 PRO B 345 148.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B2Q RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS BASED ON REFERENCE 1 IN THE REMARK 999 DATABASE, VATB_METMA. REMARK 999 A2VAL, B2VAL ARE CONFLICTS OF VATB_METMA. DBREF 2RKW A 1 460 UNP Q60187 VATB_METMA 1 460 DBREF 2RKW B 1 460 UNP Q60187 VATB_METMA 1 460 SEQADV 2RKW MET A -8 UNP Q60187 EXPRESSION TAG SEQADV 2RKW LYS A -7 UNP Q60187 EXPRESSION TAG SEQADV 2RKW HIS A -6 UNP Q60187 EXPRESSION TAG SEQADV 2RKW HIS A -5 UNP Q60187 EXPRESSION TAG SEQADV 2RKW HIS A -4 UNP Q60187 EXPRESSION TAG SEQADV 2RKW HIS A -3 UNP Q60187 EXPRESSION TAG SEQADV 2RKW HIS A -2 UNP Q60187 EXPRESSION TAG SEQADV 2RKW HIS A -1 UNP Q60187 EXPRESSION TAG SEQADV 2RKW PRO A 0 UNP Q60187 EXPRESSION TAG SEQADV 2RKW VAL A 2 UNP Q60187 ALA 2 SEE REMARK 999 SEQADV 2RKW TRP A 416 UNP Q60187 ARG 416 ENGINEERED MUTATION SEQADV 2RKW MET B -8 UNP Q60187 EXPRESSION TAG SEQADV 2RKW LYS B -7 UNP Q60187 EXPRESSION TAG SEQADV 2RKW HIS B -6 UNP Q60187 EXPRESSION TAG SEQADV 2RKW HIS B -5 UNP Q60187 EXPRESSION TAG SEQADV 2RKW HIS B -4 UNP Q60187 EXPRESSION TAG SEQADV 2RKW HIS B -3 UNP Q60187 EXPRESSION TAG SEQADV 2RKW HIS B -2 UNP Q60187 EXPRESSION TAG SEQADV 2RKW HIS B -1 UNP Q60187 EXPRESSION TAG SEQADV 2RKW PRO B 0 UNP Q60187 EXPRESSION TAG SEQADV 2RKW VAL B 2 UNP Q60187 ALA 2 SEE REMARK 999 SEQADV 2RKW TRP B 416 UNP Q60187 ARG 416 ENGINEERED MUTATION SEQRES 1 A 469 MET LYS HIS HIS HIS HIS HIS HIS PRO MET VAL LYS GLU SEQRES 2 A 469 TYR LYS THR ILE THR GLN ILE ALA GLY PRO LEU ILE PHE SEQRES 3 A 469 VAL GLU LYS THR GLU PRO VAL GLY TYR ASN GLU ILE VAL SEQRES 4 A 469 ASN ILE LYS MET GLY ASP GLY THR VAL ARG ARG GLY GLN SEQRES 5 A 469 VAL LEU ASP SER SER ALA ASP ILE VAL VAL VAL GLN VAL SEQRES 6 A 469 PHE GLU GLY THR GLY GLY LEU ASP LYS ASP CYS GLY VAL SEQRES 7 A 469 ILE PHE THR GLY GLU THR LEU LYS LEU PRO ALA SER VAL SEQRES 8 A 469 ASP LEU LEU GLY ARG ILE LEU SER GLY SER GLY GLU PRO SEQRES 9 A 469 ARG ASP GLY GLY PRO ARG ILE VAL PRO ASP GLN LEU LEU SEQRES 10 A 469 ASP ILE ASN GLY ALA ALA MET ASN PRO TYR ALA ARG LEU SEQRES 11 A 469 PRO PRO LYS ASP PHE ILE GLN THR GLY ILE SER THR ILE SEQRES 12 A 469 ASP GLY THR ASN THR LEU VAL ARG GLY GLN LYS LEU PRO SEQRES 13 A 469 ILE PHE SER ALA SER GLY LEU PRO HIS ASN GLU ILE ALA SEQRES 14 A 469 LEU GLN ILE ALA ARG GLN ALA SER VAL PRO GLY SER GLU SEQRES 15 A 469 SER ALA PHE ALA VAL VAL PHE ALA ALA MET GLY ILE THR SEQRES 16 A 469 ASN GLU GLU ALA GLN TYR PHE MET SER ASP PHE GLU LYS SEQRES 17 A 469 THR GLY ALA LEU GLU ARG ALA VAL VAL PHE LEU ASN LEU SEQRES 18 A 469 ALA ASP ASP PRO ALA VAL GLU ARG ILE VAL THR PRO ARG SEQRES 19 A 469 MET ALA LEU THR ALA ALA GLU TYR LEU ALA TYR GLU HIS SEQRES 20 A 469 GLY MET HIS VAL LEU VAL ILE LEU THR ASP ILE THR ASN SEQRES 21 A 469 TYR ALA GLU ALA LEU ARG GLN MET GLY ALA ALA ARG ASN SEQRES 22 A 469 GLU VAL PRO GLY ARG ARG GLY TYR PRO GLY TYR MET TYR SEQRES 23 A 469 THR ASP LEU ALA THR LEU TYR GLU ARG ALA GLY ILE VAL SEQRES 24 A 469 LYS GLY ALA LYS GLY SER VAL THR GLN ILE PRO ILE LEU SEQRES 25 A 469 SER MET PRO GLY ASP ASP ILE THR HIS PRO ILE PRO ASP SEQRES 26 A 469 LEU SER GLY TYR ILE THR GLU GLY GLN ILE VAL VAL ALA SEQRES 27 A 469 ARG GLU LEU HIS ARG LYS GLY ILE TYR PRO PRO ILE ASN SEQRES 28 A 469 VAL LEU PRO SER LEU SER ARG LEU MET ASN SER GLY ILE SEQRES 29 A 469 GLY ALA GLY LYS THR ARG GLU ASP HIS LYS ALA VAL SER SEQRES 30 A 469 ASP GLN MET TYR ALA GLY TYR ALA GLU GLY ARG ASP LEU SEQRES 31 A 469 ARG GLY LEU VAL ALA ILE VAL GLY LYS GLU ALA LEU SER SEQRES 32 A 469 GLU ARG ASP THR LYS PHE LEU GLU PHE ALA ASP LEU PHE SEQRES 33 A 469 GLU ASP LYS PHE VAL ARG GLN GLY TRP ASN GLU ASN ARG SEQRES 34 A 469 THR ILE GLU ASP THR LEU GLU ILE GLY TRP GLN ILE LEU SEQRES 35 A 469 THR HIS LEU PRO GLU ASN GLN LEU GLY ARG ILE ASP ASN SEQRES 36 A 469 LYS TYR ILE GLN LYS TYR HIS PRO ALA HIS ARG LYS ALA SEQRES 37 A 469 LYS SEQRES 1 B 469 MET LYS HIS HIS HIS HIS HIS HIS PRO MET VAL LYS GLU SEQRES 2 B 469 TYR LYS THR ILE THR GLN ILE ALA GLY PRO LEU ILE PHE SEQRES 3 B 469 VAL GLU LYS THR GLU PRO VAL GLY TYR ASN GLU ILE VAL SEQRES 4 B 469 ASN ILE LYS MET GLY ASP GLY THR VAL ARG ARG GLY GLN SEQRES 5 B 469 VAL LEU ASP SER SER ALA ASP ILE VAL VAL VAL GLN VAL SEQRES 6 B 469 PHE GLU GLY THR GLY GLY LEU ASP LYS ASP CYS GLY VAL SEQRES 7 B 469 ILE PHE THR GLY GLU THR LEU LYS LEU PRO ALA SER VAL SEQRES 8 B 469 ASP LEU LEU GLY ARG ILE LEU SER GLY SER GLY GLU PRO SEQRES 9 B 469 ARG ASP GLY GLY PRO ARG ILE VAL PRO ASP GLN LEU LEU SEQRES 10 B 469 ASP ILE ASN GLY ALA ALA MET ASN PRO TYR ALA ARG LEU SEQRES 11 B 469 PRO PRO LYS ASP PHE ILE GLN THR GLY ILE SER THR ILE SEQRES 12 B 469 ASP GLY THR ASN THR LEU VAL ARG GLY GLN LYS LEU PRO SEQRES 13 B 469 ILE PHE SER ALA SER GLY LEU PRO HIS ASN GLU ILE ALA SEQRES 14 B 469 LEU GLN ILE ALA ARG GLN ALA SER VAL PRO GLY SER GLU SEQRES 15 B 469 SER ALA PHE ALA VAL VAL PHE ALA ALA MET GLY ILE THR SEQRES 16 B 469 ASN GLU GLU ALA GLN TYR PHE MET SER ASP PHE GLU LYS SEQRES 17 B 469 THR GLY ALA LEU GLU ARG ALA VAL VAL PHE LEU ASN LEU SEQRES 18 B 469 ALA ASP ASP PRO ALA VAL GLU ARG ILE VAL THR PRO ARG SEQRES 19 B 469 MET ALA LEU THR ALA ALA GLU TYR LEU ALA TYR GLU HIS SEQRES 20 B 469 GLY MET HIS VAL LEU VAL ILE LEU THR ASP ILE THR ASN SEQRES 21 B 469 TYR ALA GLU ALA LEU ARG GLN MET GLY ALA ALA ARG ASN SEQRES 22 B 469 GLU VAL PRO GLY ARG ARG GLY TYR PRO GLY TYR MET TYR SEQRES 23 B 469 THR ASP LEU ALA THR LEU TYR GLU ARG ALA GLY ILE VAL SEQRES 24 B 469 LYS GLY ALA LYS GLY SER VAL THR GLN ILE PRO ILE LEU SEQRES 25 B 469 SER MET PRO GLY ASP ASP ILE THR HIS PRO ILE PRO ASP SEQRES 26 B 469 LEU SER GLY TYR ILE THR GLU GLY GLN ILE VAL VAL ALA SEQRES 27 B 469 ARG GLU LEU HIS ARG LYS GLY ILE TYR PRO PRO ILE ASN SEQRES 28 B 469 VAL LEU PRO SER LEU SER ARG LEU MET ASN SER GLY ILE SEQRES 29 B 469 GLY ALA GLY LYS THR ARG GLU ASP HIS LYS ALA VAL SER SEQRES 30 B 469 ASP GLN MET TYR ALA GLY TYR ALA GLU GLY ARG ASP LEU SEQRES 31 B 469 ARG GLY LEU VAL ALA ILE VAL GLY LYS GLU ALA LEU SER SEQRES 32 B 469 GLU ARG ASP THR LYS PHE LEU GLU PHE ALA ASP LEU PHE SEQRES 33 B 469 GLU ASP LYS PHE VAL ARG GLN GLY TRP ASN GLU ASN ARG SEQRES 34 B 469 THR ILE GLU ASP THR LEU GLU ILE GLY TRP GLN ILE LEU SEQRES 35 B 469 THR HIS LEU PRO GLU ASN GLN LEU GLY ARG ILE ASP ASN SEQRES 36 B 469 LYS TYR ILE GLN LYS TYR HIS PRO ALA HIS ARG LYS ALA SEQRES 37 B 469 LYS HELIX 1 1 SER A 81 LEU A 85 5 5 HELIX 2 2 ILE A 131 GLY A 136 1 6 HELIX 3 3 PRO A 155 ALA A 167 1 13 HELIX 4 4 THR A 186 THR A 200 1 15 HELIX 5 5 ALA A 202 GLU A 204 5 3 HELIX 6 6 PRO A 216 VAL A 222 1 7 HELIX 7 7 VAL A 222 TYR A 236 1 15 HELIX 8 8 ASP A 248 ARG A 257 1 10 HELIX 9 9 LEU A 280 GLU A 285 1 6 HELIX 10 10 LEU A 317 ILE A 321 5 5 HELIX 11 11 ALA A 329 ARG A 334 1 6 HELIX 12 12 LEU A 350 ILE A 355 1 6 HELIX 13 13 ASP A 363 VAL A 388 1 26 HELIX 14 14 GLY A 389 LEU A 393 5 5 HELIX 15 15 SER A 394 PHE A 411 1 18 HELIX 16 16 THR A 421 HIS A 435 1 15 HELIX 17 17 ILE A 444 TYR A 452 1 9 HELIX 18 18 SER B 81 LEU B 85 5 5 HELIX 19 19 ILE B 131 GLY B 136 1 6 HELIX 20 20 ASN B 157 ALA B 164 1 8 HELIX 21 21 GLU B 189 THR B 200 1 12 HELIX 22 22 PRO B 216 GLU B 237 1 22 HELIX 23 23 ILE B 249 LEU B 256 1 8 HELIX 24 24 LEU B 280 GLU B 285 1 6 HELIX 25 25 ALA B 329 LYS B 335 1 7 HELIX 26 26 LEU B 350 GLY B 354 5 5 HELIX 27 27 ASP B 363 ARG B 382 1 20 HELIX 28 28 LEU B 384 GLY B 389 1 6 HELIX 29 29 SER B 394 LYS B 410 1 17 HELIX 30 30 THR B 421 THR B 434 1 14 HELIX 31 31 ASP B 445 GLN B 450 1 6 SHEET 1 A 4 ILE A 16 VAL A 18 0 SHEET 2 A 4 VAL A 52 VAL A 54 -1 O VAL A 52 N VAL A 18 SHEET 3 A 4 GLY A 42 SER A 47 -1 N LEU A 45 O VAL A 53 SHEET 4 A 4 ILE A 29 VAL A 30 -1 N VAL A 30 O GLY A 42 SHEET 1 B 2 LYS A 77 ALA A 80 0 SHEET 2 B 2 GLN A 106 ASP A 109 -1 O LEU A 108 N LEU A 78 SHEET 1 C 6 ILE A 88 LEU A 89 0 SHEET 2 C 6 ALA A 206 LEU A 212 1 O VAL A 208 N LEU A 89 SHEET 3 C 6 PHE A 176 ILE A 185 1 N PHE A 180 O PHE A 209 SHEET 4 C 6 HIS A 241 THR A 247 1 O THR A 247 N ALA A 181 SHEET 5 C 6 SER A 296 MET A 305 1 O THR A 298 N VAL A 244 SHEET 6 C 6 GLY A 288 ILE A 289 -1 N GLY A 288 O VAL A 297 SHEET 1 D 8 ILE A 88 LEU A 89 0 SHEET 2 D 8 ALA A 206 LEU A 212 1 O VAL A 208 N LEU A 89 SHEET 3 D 8 PHE A 176 ILE A 185 1 N PHE A 180 O PHE A 209 SHEET 4 D 8 HIS A 241 THR A 247 1 O THR A 247 N ALA A 181 SHEET 5 D 8 SER A 296 MET A 305 1 O THR A 298 N VAL A 244 SHEET 6 D 8 ILE A 148 ALA A 151 1 N ILE A 148 O LEU A 303 SHEET 7 D 8 GLY A 324 VAL A 327 1 N ILE A 326 O PHE A 149 SHEET 8 D 8 LEU A 347 SER A 348 -1 O LEU A 347 N GLN A 325 SHEET 1 E 3 PHE B 17 GLU B 19 0 SHEET 2 E 3 ILE B 51 VAL B 53 -1 O VAL B 52 N VAL B 18 SHEET 3 E 3 ASP B 46 SER B 47 -1 N ASP B 46 O VAL B 53 SHEET 1 F 2 LYS B 77 ALA B 80 0 SHEET 2 F 2 GLN B 106 ASP B 109 -1 O LEU B 108 N LEU B 78 SHEET 1 G 6 ILE B 88 LEU B 89 0 SHEET 2 G 6 ALA B 206 LEU B 212 1 O LEU B 210 N LEU B 89 SHEET 3 G 6 PHE B 176 ILE B 185 1 N ALA B 182 O PHE B 209 SHEET 4 G 6 HIS B 241 THR B 247 1 O LEU B 243 N VAL B 179 SHEET 5 G 6 SER B 296 LEU B 303 1 O THR B 298 N VAL B 244 SHEET 6 G 6 GLY B 288 ILE B 289 -1 N GLY B 288 O VAL B 297 SHEET 1 H 8 ILE B 88 LEU B 89 0 SHEET 2 H 8 ALA B 206 LEU B 212 1 O LEU B 210 N LEU B 89 SHEET 3 H 8 PHE B 176 ILE B 185 1 N ALA B 182 O PHE B 209 SHEET 4 H 8 HIS B 241 THR B 247 1 O LEU B 243 N VAL B 179 SHEET 5 H 8 SER B 296 LEU B 303 1 O THR B 298 N VAL B 244 SHEET 6 H 8 ILE B 148 PHE B 149 1 N ILE B 148 O PRO B 301 SHEET 7 H 8 GLY B 324 VAL B 327 1 O ILE B 326 N PHE B 149 SHEET 8 H 8 LEU B 347 SER B 348 -1 O LEU B 347 N GLN B 325 CISPEP 1 GLY A 98 GLY A 99 0 -2.34 CISPEP 2 MET A 115 ASN A 116 0 -0.61 CISPEP 3 THR A 247 ASP A 248 0 -6.55 CISPEP 4 TYR A 272 PRO A 273 0 -3.85 CISPEP 5 ILE A 314 PRO A 315 0 -21.63 CISPEP 6 TYR A 338 PRO A 339 0 -2.30 CISPEP 7 PRO A 339 PRO A 340 0 -2.72 CISPEP 8 PHE B 71 THR B 72 0 1.51 CISPEP 9 THR B 72 GLY B 73 0 -8.26 CISPEP 10 GLY B 260 ALA B 261 0 1.68 CISPEP 11 HIS B 312 PRO B 313 0 -1.83 CISPEP 12 TYR B 338 PRO B 339 0 -9.13 CRYST1 73.052 96.094 129.941 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013689 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010406 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007696 0.00000