HEADER PROTEIN TRANSPORT, SUGAR BINDING PROTEIN18-OCT-07 2RL7 TITLE CRYSTAL STRUCTURE CATION-DEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR AT PH TITLE 2 4.8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATION-DEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CD MAN-6-P RECEPTOR, CD-MPR, 46 KDA MANNOSE 6-PHOSPHATE COMPND 5 RECEPTOR, MPR 46; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: M6PR; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BTI-TN-5B1-4; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS P-TYPE LECTIN, RECEPTOR, MANNOSE 6-PHOSPHATE, LECTIN, GLYCOPROTEIN, KEYWDS 2 LYSOSOME, MEMBRANE, TRANSMEMBRANE, TRANSPORT, PROTEIN TRANSPORT, KEYWDS 3 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.J.OLSON,O.HINDSGAUL,J.-J.P.KIM,N.M.DAHMS REVDAT 8 20-OCT-21 2RL7 1 SEQADV HETSYN REVDAT 7 29-JUL-20 2RL7 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE ATOM REVDAT 6 25-OCT-17 2RL7 1 REMARK REVDAT 5 13-JUL-11 2RL7 1 VERSN REVDAT 4 24-FEB-09 2RL7 1 VERSN REVDAT 3 22-APR-08 2RL7 1 JRNL REVDAT 2 01-APR-08 2RL7 1 JRNL REVDAT 1 12-FEB-08 2RL7 0 JRNL AUTH L.J.OLSON,O.HINDSGAUL,N.M.DAHMS,J.J.KIM JRNL TITL STRUCTURAL INSIGHTS INTO THE MECHANISM OF PH-DEPENDENT JRNL TITL 2 LIGAND BINDING AND RELEASE BY THE CATION-DEPENDENT MANNOSE JRNL TITL 3 6-PHOSPHATE RECEPTOR. JRNL REF J.BIOL.CHEM. V. 283 10124 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18272523 JRNL DOI 10.1074/JBC.M708994200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.0 REMARK 3 NUMBER OF REFLECTIONS : 37805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3047 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4698 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 149 REMARK 3 SOLVENT ATOMS : 482 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.15300 REMARK 3 B22 (A**2) : 1.65600 REMARK 3 B33 (A**2) : 0.49700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.99300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.499 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.403 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.157 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.174 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 48.82 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : NAG.PAR REMARK 3 PARAMETER FILE 5 : SOLVENT.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000044994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37928 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.09900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M CACODYLATE, 30% PEG5000MME, 0.2M REMARK 280 AMMONIUM SULFATE, 0.09MM TRITONX-100, PH 4.8, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.51400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2570 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 11 REMARK 465 LYS A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 THR B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 LYS B 14 REMARK 465 GLU B 15 REMARK 465 THR C 1 REMARK 465 GLU C 2 REMARK 465 GLU C 11 REMARK 465 LYS C 12 REMARK 465 GLY C 13 REMARK 465 LYS C 14 REMARK 465 GLU C 15 REMARK 465 THR D 1 REMARK 465 GLU D 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG G 1 O5 NAG G 2 1.84 REMARK 500 O4 NAG F 1 O5 NAG F 2 1.87 REMARK 500 O4 NAG E 1 O5 NAG E 2 1.87 REMARK 500 O4 NAG H 1 O5 NAG H 2 1.88 REMARK 500 OD1 ASN D 104 N CYS D 106 1.94 REMARK 500 CD1 ILE D 95 O HOH D 4443 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 7 C LEU A 8 N -0.200 REMARK 500 SER D 59 C SER D 60 N 0.214 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 126 N - CA - CB ANGL. DEV. = 18.8 DEGREES REMARK 500 GLU A 134 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 CYS B 6 CA - C - N ANGL. DEV. = -14.1 DEGREES REMARK 500 CYS B 6 O - C - N ANGL. DEV. = 12.9 DEGREES REMARK 500 TYR B 102 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 SER D 59 CA - C - N ANGL. DEV. = 35.6 DEGREES REMARK 500 SER D 59 O - C - N ANGL. DEV. = -39.5 DEGREES REMARK 500 ASN D 104 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 43.35 -107.18 REMARK 500 HIS A 58 27.93 -142.59 REMARK 500 ASN A 104 -151.08 -153.42 REMARK 500 ASN A 120 104.83 -160.83 REMARK 500 ALA A 125 138.65 -176.58 REMARK 500 GLN A 139 74.96 -117.25 REMARK 500 THR B 5 -165.77 -115.58 REMARK 500 SER B 41 134.87 -33.26 REMARK 500 ASP B 43 72.78 -64.16 REMARK 500 SER B 59 49.36 35.45 REMARK 500 SER B 70 -17.71 -144.82 REMARK 500 ASN B 71 -12.09 -143.46 REMARK 500 ASN B 90 26.56 -153.36 REMARK 500 ASP B 103 36.51 -143.71 REMARK 500 ASN B 104 -145.72 -119.65 REMARK 500 ALA B 125 126.67 -173.56 REMARK 500 ASN C 90 34.82 -151.73 REMARK 500 ASN C 104 -152.93 -142.67 REMARK 500 ALA C 125 125.61 -173.68 REMARK 500 THR D 5 -161.31 -123.97 REMARK 500 HIS D 58 -95.20 -111.63 REMARK 500 SER D 89 -71.17 -52.41 REMARK 500 ASN D 104 -147.94 -141.69 REMARK 500 ASN D 120 111.58 -160.40 REMARK 500 ALA D 125 126.16 -177.96 REMARK 500 SER D 149 135.98 -171.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 15 SER A 16 51.26 REMARK 500 SER B 16 GLU B 17 -143.37 REMARK 500 GLU B 17 LYS B 18 144.51 REMARK 500 VAL C 9 GLY C 10 -139.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS B 69 13.68 REMARK 500 SER D 59 22.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG E 1 REMARK 610 NAG F 1 REMARK 610 NAG G 1 REMARK 610 NAG H 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RL6 RELATED DB: PDB REMARK 900 RELATED ID: 2RL8 RELATED DB: PDB REMARK 900 RELATED ID: 2RL9 RELATED DB: PDB REMARK 900 RELATED ID: 2RLB RELATED DB: PDB DBREF 2RL7 A 1 154 UNP P11456 MPRD_BOVIN 29 182 DBREF 2RL7 B 1 154 UNP P11456 MPRD_BOVIN 29 182 DBREF 2RL7 C 1 154 UNP P11456 MPRD_BOVIN 29 182 DBREF 2RL7 D 1 154 UNP P11456 MPRD_BOVIN 29 182 SEQADV 2RL7 GLN A 31 UNP P11456 ASN 59 ENGINEERED MUTATION SEQADV 2RL7 GLN A 57 UNP P11456 ASN 85 ENGINEERED MUTATION SEQADV 2RL7 GLN A 68 UNP P11456 ASN 96 ENGINEERED MUTATION SEQADV 2RL7 GLN A 87 UNP P11456 ASN 115 ENGINEERED MUTATION SEQADV 2RL7 GLN B 31 UNP P11456 ASN 59 ENGINEERED MUTATION SEQADV 2RL7 GLN B 57 UNP P11456 ASN 85 ENGINEERED MUTATION SEQADV 2RL7 GLN B 68 UNP P11456 ASN 96 ENGINEERED MUTATION SEQADV 2RL7 GLN B 87 UNP P11456 ASN 115 ENGINEERED MUTATION SEQADV 2RL7 GLN C 31 UNP P11456 ASN 59 ENGINEERED MUTATION SEQADV 2RL7 GLN C 57 UNP P11456 ASN 85 ENGINEERED MUTATION SEQADV 2RL7 GLN C 68 UNP P11456 ASN 96 ENGINEERED MUTATION SEQADV 2RL7 GLN C 87 UNP P11456 ASN 115 ENGINEERED MUTATION SEQADV 2RL7 GLN D 31 UNP P11456 ASN 59 ENGINEERED MUTATION SEQADV 2RL7 GLN D 57 UNP P11456 ASN 85 ENGINEERED MUTATION SEQADV 2RL7 GLN D 68 UNP P11456 ASN 96 ENGINEERED MUTATION SEQADV 2RL7 GLN D 87 UNP P11456 ASN 115 ENGINEERED MUTATION SEQRES 1 A 154 THR GLU GLU LYS THR CYS ASP LEU VAL GLY GLU LYS GLY SEQRES 2 A 154 LYS GLU SER GLU LYS GLU LEU ALA LEU LEU LYS ARG LEU SEQRES 3 A 154 THR PRO LEU PHE GLN LYS SER PHE GLU SER THR VAL GLY SEQRES 4 A 154 GLN SER PRO ASP MET TYR SER TYR VAL PHE ARG VAL CYS SEQRES 5 A 154 ARG GLU ALA GLY GLN HIS SER SER GLY ALA GLY LEU VAL SEQRES 6 A 154 GLN ILE GLN LYS SER ASN GLY LYS GLU THR VAL VAL GLY SEQRES 7 A 154 ARG PHE ASN GLU THR GLN ILE PHE GLN GLY SER ASN TRP SEQRES 8 A 154 ILE MET LEU ILE TYR LYS GLY GLY ASP GLU TYR ASP ASN SEQRES 9 A 154 HIS CYS GLY ARG GLU GLN ARG ARG ALA VAL VAL MET ILE SEQRES 10 A 154 SER CYS ASN ARG HIS THR LEU ALA ASP ASN PHE ASN PRO SEQRES 11 A 154 VAL SER GLU GLU ARG GLY LYS VAL GLN ASP CYS PHE TYR SEQRES 12 A 154 LEU PHE GLU MET ASP SER SER LEU ALA CYS SER SEQRES 1 B 154 THR GLU GLU LYS THR CYS ASP LEU VAL GLY GLU LYS GLY SEQRES 2 B 154 LYS GLU SER GLU LYS GLU LEU ALA LEU LEU LYS ARG LEU SEQRES 3 B 154 THR PRO LEU PHE GLN LYS SER PHE GLU SER THR VAL GLY SEQRES 4 B 154 GLN SER PRO ASP MET TYR SER TYR VAL PHE ARG VAL CYS SEQRES 5 B 154 ARG GLU ALA GLY GLN HIS SER SER GLY ALA GLY LEU VAL SEQRES 6 B 154 GLN ILE GLN LYS SER ASN GLY LYS GLU THR VAL VAL GLY SEQRES 7 B 154 ARG PHE ASN GLU THR GLN ILE PHE GLN GLY SER ASN TRP SEQRES 8 B 154 ILE MET LEU ILE TYR LYS GLY GLY ASP GLU TYR ASP ASN SEQRES 9 B 154 HIS CYS GLY ARG GLU GLN ARG ARG ALA VAL VAL MET ILE SEQRES 10 B 154 SER CYS ASN ARG HIS THR LEU ALA ASP ASN PHE ASN PRO SEQRES 11 B 154 VAL SER GLU GLU ARG GLY LYS VAL GLN ASP CYS PHE TYR SEQRES 12 B 154 LEU PHE GLU MET ASP SER SER LEU ALA CYS SER SEQRES 1 C 154 THR GLU GLU LYS THR CYS ASP LEU VAL GLY GLU LYS GLY SEQRES 2 C 154 LYS GLU SER GLU LYS GLU LEU ALA LEU LEU LYS ARG LEU SEQRES 3 C 154 THR PRO LEU PHE GLN LYS SER PHE GLU SER THR VAL GLY SEQRES 4 C 154 GLN SER PRO ASP MET TYR SER TYR VAL PHE ARG VAL CYS SEQRES 5 C 154 ARG GLU ALA GLY GLN HIS SER SER GLY ALA GLY LEU VAL SEQRES 6 C 154 GLN ILE GLN LYS SER ASN GLY LYS GLU THR VAL VAL GLY SEQRES 7 C 154 ARG PHE ASN GLU THR GLN ILE PHE GLN GLY SER ASN TRP SEQRES 8 C 154 ILE MET LEU ILE TYR LYS GLY GLY ASP GLU TYR ASP ASN SEQRES 9 C 154 HIS CYS GLY ARG GLU GLN ARG ARG ALA VAL VAL MET ILE SEQRES 10 C 154 SER CYS ASN ARG HIS THR LEU ALA ASP ASN PHE ASN PRO SEQRES 11 C 154 VAL SER GLU GLU ARG GLY LYS VAL GLN ASP CYS PHE TYR SEQRES 12 C 154 LEU PHE GLU MET ASP SER SER LEU ALA CYS SER SEQRES 1 D 154 THR GLU GLU LYS THR CYS ASP LEU VAL GLY GLU LYS GLY SEQRES 2 D 154 LYS GLU SER GLU LYS GLU LEU ALA LEU LEU LYS ARG LEU SEQRES 3 D 154 THR PRO LEU PHE GLN LYS SER PHE GLU SER THR VAL GLY SEQRES 4 D 154 GLN SER PRO ASP MET TYR SER TYR VAL PHE ARG VAL CYS SEQRES 5 D 154 ARG GLU ALA GLY GLN HIS SER SER GLY ALA GLY LEU VAL SEQRES 6 D 154 GLN ILE GLN LYS SER ASN GLY LYS GLU THR VAL VAL GLY SEQRES 7 D 154 ARG PHE ASN GLU THR GLN ILE PHE GLN GLY SER ASN TRP SEQRES 8 D 154 ILE MET LEU ILE TYR LYS GLY GLY ASP GLU TYR ASP ASN SEQRES 9 D 154 HIS CYS GLY ARG GLU GLN ARG ARG ALA VAL VAL MET ILE SEQRES 10 D 154 SER CYS ASN ARG HIS THR LEU ALA ASP ASN PHE ASN PRO SEQRES 11 D 154 VAL SER GLU GLU ARG GLY LYS VAL GLN ASP CYS PHE TYR SEQRES 12 D 154 LEU PHE GLU MET ASP SER SER LEU ALA CYS SER HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET GOL A 155 6 HET ACT B 318 4 HET ACT B 319 4 HET CAC B 317 5 HET ACT C 155 4 HET ACT C 156 4 HET GOL C 157 6 HET ACT D 202 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM CAC CACODYLATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN CAC DIMETHYLARSINATE FORMUL 5 NAG 8(C8 H15 N O6) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 10 ACT 5(C2 H3 O2 1-) FORMUL 12 CAC C2 H6 AS O2 1- FORMUL 17 HOH *482(H2 O) HELIX 1 1 LYS A 18 ARG A 25 1 8 HELIX 2 2 LEU A 26 PHE A 30 5 5 HELIX 3 3 SER A 150 CYS A 153 5 4 HELIX 4 4 SER B 16 LEU B 26 1 11 HELIX 5 5 THR B 27 PHE B 30 5 4 HELIX 6 6 SER B 150 CYS B 153 5 4 HELIX 7 7 SER C 16 LEU C 26 1 11 HELIX 8 8 THR C 27 PHE C 30 5 4 HELIX 9 9 SER C 150 CYS C 153 5 4 HELIX 10 10 SER D 16 LEU D 26 1 11 HELIX 11 11 THR D 27 PHE D 30 5 4 HELIX 12 12 SER D 150 CYS D 153 5 4 SHEET 1 A 8 SER A 33 VAL A 38 0 SHEET 2 A 8 TYR A 45 ARG A 50 -1 O PHE A 49 N PHE A 34 SHEET 3 A 8 ALA A 62 GLN A 68 -1 O ILE A 67 N SER A 46 SHEET 4 A 8 GLU A 74 GLY A 88 -1 O THR A 75 N GLN A 66 SHEET 5 A 8 TRP A 91 GLY A 98 -1 O TRP A 91 N GLY A 88 SHEET 6 A 8 ALA A 113 CYS A 119 -1 O VAL A 115 N LEU A 94 SHEET 7 A 8 VAL A 138 SER A 149 1 O PHE A 145 N MET A 116 SHEET 8 A 8 ASP A 126 ARG A 135 -1 N ARG A 135 O VAL A 138 SHEET 1 B 8 PHE B 34 GLY B 39 0 SHEET 2 B 8 MET B 44 PHE B 49 -1 O PHE B 49 N PHE B 34 SHEET 3 B 8 ALA B 62 LYS B 69 -1 O ILE B 67 N SER B 46 SHEET 4 B 8 GLU B 74 GLN B 87 -1 O THR B 75 N GLN B 66 SHEET 5 B 8 TRP B 91 GLY B 98 -1 O ILE B 95 N GLN B 84 SHEET 6 B 8 ALA B 113 CYS B 119 -1 O ALA B 113 N TYR B 96 SHEET 7 B 8 VAL B 138 SER B 149 1 O PHE B 145 N MET B 116 SHEET 8 B 8 ASP B 126 ARG B 135 -1 N VAL B 131 O LEU B 144 SHEET 1 C 8 PHE C 34 VAL C 38 0 SHEET 2 C 8 TYR C 45 PHE C 49 -1 O PHE C 49 N PHE C 34 SHEET 3 C 8 ALA C 62 GLN C 68 -1 O ILE C 67 N SER C 46 SHEET 4 C 8 GLU C 74 GLN C 87 -1 O THR C 75 N GLN C 66 SHEET 5 C 8 TRP C 91 LYS C 97 -1 O LYS C 97 N ARG C 79 SHEET 6 C 8 ALA C 113 CYS C 119 -1 O ILE C 117 N ILE C 92 SHEET 7 C 8 VAL C 138 SER C 149 1 O PHE C 145 N MET C 116 SHEET 8 C 8 ASP C 126 ARG C 135 -1 N VAL C 131 O LEU C 144 SHEET 1 D 8 PHE D 34 VAL D 38 0 SHEET 2 D 8 TYR D 45 PHE D 49 -1 O PHE D 49 N PHE D 34 SHEET 3 D 8 ALA D 62 GLN D 68 -1 O ILE D 67 N SER D 46 SHEET 4 D 8 GLU D 74 GLN D 87 -1 O THR D 75 N GLN D 66 SHEET 5 D 8 TRP D 91 LYS D 97 -1 O ILE D 95 N GLN D 84 SHEET 6 D 8 ALA D 113 CYS D 119 -1 O ILE D 117 N ILE D 92 SHEET 7 D 8 VAL D 138 SER D 149 1 O PHE D 145 N VAL D 114 SHEET 8 D 8 ASP D 126 ARG D 135 -1 N VAL D 131 O LEU D 144 SSBOND 1 CYS A 6 CYS A 52 1555 1555 2.04 SSBOND 2 CYS A 106 CYS A 141 1555 1555 2.04 SSBOND 3 CYS A 119 CYS A 153 1555 1555 2.03 SSBOND 4 CYS B 6 CYS B 52 1555 1555 2.03 SSBOND 5 CYS B 106 CYS B 141 1555 1555 2.04 SSBOND 6 CYS B 119 CYS B 153 1555 1555 2.03 SSBOND 7 CYS C 6 CYS C 52 1555 1555 2.04 SSBOND 8 CYS C 106 CYS C 141 1555 1555 2.04 SSBOND 9 CYS C 119 CYS C 153 1555 1555 2.03 SSBOND 10 CYS D 6 CYS D 52 1555 1555 2.03 SSBOND 11 CYS D 106 CYS D 141 1555 1555 2.04 SSBOND 12 CYS D 119 CYS D 153 1555 1555 2.03 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.40 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.40 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.41 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.41 CISPEP 1 SER A 41 PRO A 42 0 0.03 CISPEP 2 SER B 41 PRO B 42 0 0.23 CISPEP 3 SER C 41 PRO C 42 0 -0.01 CISPEP 4 SER D 41 PRO D 42 0 -0.03 CRYST1 50.840 123.028 53.092 90.00 92.46 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019670 0.000000 0.000845 0.00000 SCALE2 0.000000 0.008128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018853 0.00000