HEADER ANTIMICROBIAL PROTEIN 07-JUL-07 2RLG TITLE NMR STRUCTURE OF THE ANTIMICROBIAL PEPTIDE RP-1 BOUND TO SDS MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIMICROBIAL PEPTIDE RP-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SOLID PHASE SYNTHESIS EMPLOYING FMOC (O- SOURCE 4 FLUORENYLMETHYL-OXYCARBONYL) CHEMISTRY KEYWDS ANTIMICROBIAL PEPTIDE, ALPHA-HELIX, AMPHIPATHIC, MICELLE, KEYWDS 2 ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.BOURBIGOT,E.DODD,C.HORWOOD,V.BOOTH REVDAT 4 16-MAR-22 2RLG 1 REMARK REVDAT 3 19-JAN-10 2RLG 1 JRNL REVDAT 2 24-FEB-09 2RLG 1 VERSN REVDAT 1 08-JUL-08 2RLG 0 JRNL AUTH S.BOURBIGOT,E.DODD,C.HORWOOD,N.CUMBY,L.FARDY,W.H.WELCH, JRNL AUTH 2 Z.RAMJAN,S.SHARMA,A.J.WARING,M.R.YEAMAN,V.BOOTH JRNL TITL ANTIMICROBIAL PEPTIDE RP-1 STRUCTURE AND INTERACTIONS WITH JRNL TITL 2 ANIONIC VERSUS ZWITTERIONIC MICELLES. JRNL REF BIOPOLYMERS V. 91 1 2009 JRNL REFN ISSN 0006-3525 JRNL PMID 18712851 JRNL DOI 10.1002/BIP.21071 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RLG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000150002. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM [U-15N] PROTEIN, 0.4MM REMARK 210 DSS, 150MM [U-99% 2H] SDS, 0.4MM REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.110, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 -31.45 175.30 REMARK 500 1 LYS A 15 -80.82 -90.53 REMARK 500 1 ARG A 16 -80.96 -94.83 REMARK 500 1 LEU A 17 -17.57 153.24 REMARK 500 2 LEU A 2 -35.48 -169.10 REMARK 500 2 LYS A 15 -81.57 -91.09 REMARK 500 2 ARG A 16 -80.34 -94.79 REMARK 500 2 LEU A 17 -22.74 155.02 REMARK 500 3 LEU A 2 -30.20 -170.99 REMARK 500 3 LYS A 15 -81.15 -91.12 REMARK 500 3 ARG A 16 -80.55 -94.42 REMARK 500 3 LEU A 17 -20.25 153.78 REMARK 500 4 LEU A 2 -33.53 -173.82 REMARK 500 4 LYS A 15 -81.42 -91.48 REMARK 500 4 ARG A 16 -81.69 -96.37 REMARK 500 4 LEU A 17 -21.96 158.15 REMARK 500 5 LEU A 2 -33.16 -175.93 REMARK 500 5 LYS A 15 -81.97 -91.92 REMARK 500 5 ARG A 16 -81.79 -96.44 REMARK 500 5 LEU A 17 -22.10 156.83 REMARK 500 6 LEU A 2 -35.08 -178.18 REMARK 500 6 LYS A 15 -82.07 -91.57 REMARK 500 6 ARG A 16 -81.51 -97.47 REMARK 500 6 LEU A 17 -24.68 160.25 REMARK 500 7 LEU A 2 -32.35 -174.59 REMARK 500 7 LYS A 15 -80.88 -90.47 REMARK 500 7 ARG A 16 -80.82 -95.82 REMARK 500 7 LEU A 17 -22.25 155.78 REMARK 500 8 LEU A 2 -34.19 -175.20 REMARK 500 8 LYS A 15 -81.41 -91.65 REMARK 500 8 ARG A 16 -82.14 -97.09 REMARK 500 8 LEU A 17 -23.09 159.78 REMARK 500 9 LEU A 2 -27.19 -177.41 REMARK 500 9 LYS A 15 -81.50 -91.03 REMARK 500 9 ARG A 16 -80.98 -95.37 REMARK 500 9 LEU A 17 -23.53 157.01 REMARK 500 10 LEU A 2 -74.74 178.01 REMARK 500 10 LYS A 15 -80.91 -91.57 REMARK 500 10 ARG A 16 -80.67 -93.60 REMARK 500 10 LEU A 17 -21.65 151.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RLH RELATED DB: PDB DBREF 2RLG A 1 18 PDB 2RLG 2RLG 1 18 SEQRES 1 A 18 ALA LEU TYR LYS LYS PHE LYS LYS LYS LEU LEU LYS SER SEQRES 2 A 18 LEU LYS ARG LEU GLY HELIX 1 1 LEU A 2 ARG A 16 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1