HEADER VIRAL PROTEIN 05-JUL-07 2RLJ TITLE NMR STRUCTURE OF EBOLA FUSION PEPTIDE IN SDS MICELLES AT PH 7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EBOLA FUSION PEPTIDE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZAIRE EBOLAVIRUS; SOURCE 3 ORGANISM_TAXID: 186538; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FUSION PEPTIDE, SDS MICELLES, EBOLA VIRUS, FILOVIRUS, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.S.FREITAS,L.P.GASPAR,M.LORENZONI,F.C.ALMEIDA,L.W.TINOCO, AUTHOR 2 M.S.ALMEIDA,L.F.MAIA,L.DEGREVE,A.P.VALENTE,J.L.SILVA REVDAT 3 16-MAR-22 2RLJ 1 REMARK REVDAT 2 24-FEB-09 2RLJ 1 VERSN REVDAT 1 07-AUG-07 2RLJ 0 JRNL AUTH M.S.FREITAS,L.P.GASPAR,M.LORENZONI,F.C.ALMEIDA,L.W.TINOCO, JRNL AUTH 2 M.S.ALMEIDA,L.F.MAIA,L.DEGREVE,A.P.VALENTE,J.L.SILVA JRNL TITL STRUCTURE OF THE EBOLA FUSION PEPTIDE IN A MEMBRANE-MIMETIC JRNL TITL 2 ENVIRONMENT AND THE INTERACTION WITH LIPID RAFTS. JRNL REF J.BIOL.CHEM. V. 282 27306 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17545161 JRNL DOI 10.1074/JBC.M611864200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRDRAW, CNSSOLVE REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRDRAW), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNSSOLVE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RLJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000150005. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.015 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 400MM SDS, 10% D2O, 15MM REMARK 210 POTASSIUM PHOSPHATE, 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CNSSOLVE, PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 3 -70.01 -106.40 REMARK 500 1 ILE A 4 -42.27 -142.91 REMARK 500 1 PRO A 10 -27.53 -39.99 REMARK 500 1 ALA A 15 55.42 -102.93 REMARK 500 3 ALA A 2 64.34 61.77 REMARK 500 3 ALA A 3 -78.15 -172.21 REMARK 500 3 LEU A 6 31.38 -151.54 REMARK 500 3 ALA A 7 40.90 -96.71 REMARK 500 3 PRO A 14 -71.92 -58.62 REMARK 500 3 ALA A 15 97.12 58.77 REMARK 500 4 LEU A 6 29.15 -159.07 REMARK 500 5 ALA A 2 30.14 -148.14 REMARK 500 5 ALA A 7 60.73 -116.58 REMARK 500 5 ALA A 15 -81.86 -131.64 REMARK 500 6 ALA A 2 -43.13 -167.98 REMARK 500 7 ALA A 3 37.98 -177.46 REMARK 500 7 LEU A 6 61.37 -106.20 REMARK 500 7 ALA A 15 74.70 58.91 REMARK 500 8 ALA A 3 35.51 -143.73 REMARK 500 8 LEU A 6 29.73 46.82 REMARK 500 9 ALA A 3 -71.68 -176.15 REMARK 500 9 ALA A 7 41.34 -95.00 REMARK 500 10 ALA A 3 -84.05 -83.21 REMARK 500 10 LEU A 6 29.74 -155.13 REMARK 500 10 ALA A 7 43.94 -97.39 REMARK 500 10 PRO A 10 -31.74 -39.48 REMARK 500 10 ALA A 15 50.99 -90.68 REMARK 500 11 LEU A 6 24.01 -144.74 REMARK 500 12 ALA A 2 45.82 -154.46 REMARK 500 12 PRO A 14 91.99 -64.02 REMARK 500 13 ALA A 3 -45.20 -175.65 REMARK 500 13 ALA A 7 48.72 -92.65 REMARK 500 13 ALA A 15 -176.90 -67.56 REMARK 500 14 ALA A 3 -76.70 -126.55 REMARK 500 14 ALA A 7 30.63 -98.95 REMARK 500 14 ALA A 15 -175.01 58.91 REMARK 500 15 ALA A 3 -45.15 -139.80 REMARK 500 15 ALA A 15 166.13 61.85 REMARK 500 16 LEU A 6 49.13 -95.25 REMARK 500 16 PRO A 10 -28.82 -39.91 REMARK 500 16 PRO A 14 88.28 -53.21 REMARK 500 16 ALA A 15 -167.42 53.63 REMARK 500 17 LEU A 6 49.71 -92.58 REMARK 500 17 ALA A 15 -173.15 59.50 REMARK 500 18 LEU A 6 62.35 -107.60 REMARK 500 18 ALA A 15 69.55 -112.82 REMARK 500 19 ALA A 7 39.74 -99.25 REMARK 500 20 LEU A 6 26.13 -141.54 REMARK 500 20 ALA A 7 47.44 -96.23 REMARK 500 20 PRO A 14 -179.78 -65.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 2RLJ A 1 16 UNP Q05320 VGP_EBOZM 524 539 SEQRES 1 A 16 GLY ALA ALA ILE GLY LEU ALA TRP ILE PRO TYR PHE GLY SEQRES 2 A 16 PRO ALA ALA HELIX 1 1 TRP A 8 PHE A 12 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1