HEADER IMMUNE SYSTEM 28-JUL-07 2RLP TITLE NMR STRUCTURE OF CCP MODULES 1-2 OF COMPLEMENT FACTOR H COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT FACTOR H; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES IN DATABASE 20-142; COMPND 5 SYNONYM: H FACTOR 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CFH, HF, HF1, HF2; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PPICZALPHAB KEYWDS COMPLEMENT, FACTOR H, AGE-RELATED MACULAR DEGENERATION, IMMUNE KEYWDS 2 SYSTEM, COFACTOR ACTIVITY, ALTERNATIVE SPLICING, COMPLEMENT KEYWDS 3 ALTERNATE PATHWAY, DISEASE MUTATION, GLYCOPROTEIN, IMMUNE RESPONSE, KEYWDS 4 INNATE IMMUNITY, POLYMORPHISM, SECRETED, SUSHI EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR H.G.HOCKING,A.P.HERBERT,M.K.PANGBURN,D.KAVANAGH,P.N.BARLOW,D.UHRIN REVDAT 4 16-MAR-22 2RLP 1 REMARK SEQADV REVDAT 3 24-FEB-09 2RLP 1 VERSN REVDAT 2 01-JUL-08 2RLP 1 JRNL REVDAT 1 19-FEB-08 2RLP 0 JRNL AUTH H.G.HOCKING,A.P.HERBERT,D.KAVANAGH,D.C.SOARES,V.P.FERREIRA, JRNL AUTH 2 M.K.PANGBURN,D.UHRIN,P.N.BARLOW JRNL TITL STRUCTURE OF THE N-TERMINAL REGION OF COMPLEMENT FACTOR H JRNL TITL 2 AND CONFORMATIONAL IMPLICATIONS OF DISEASE-LINKED SEQUENCE JRNL TITL 3 VARIATIONS. JRNL REF J.BIOL.CHEM. V. 283 9475 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18252712 JRNL DOI 10.1074/JBC.M709587200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ANALYSIS 1.0, CNS 1.1 REMARK 3 AUTHORS : CCPN (ANALYSIS), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WITH SIMULATED ANNEALING REMARK 4 REMARK 4 2RLP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000150010. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM [U-95% 13C; U-95% 15N] REMARK 210 FACTORH CCP1-2, 10MM POTASSIUM REMARK 210 PHOSPHATE, 12MG/ML PF1 PHAGE, REMARK 210 50MM L-ARG, 50MM L-GLU, 90% H2O/ REMARK 210 10% D2O; 1MM FACTORH CCP1-2, REMARK 210 10MM POTASSIUM PHOSPHATE, 50MM L- REMARK 210 ARG, 50MM L-GLU, 90% H2O/10% D2O; REMARK 210 1MM FACTORH CCP1-2, 10MM REMARK 210 POTASSIUM PHOSPHATE, 50MM L-ARG, REMARK 210 50MM L-GLU, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCACO; 3D HBHA(CO)NH; REMARK 210 3D 1H-13C NOESY; 3D 1H-15N NOESY; REMARK 210 3D HCCH-TOCSY; 3D H(CCO)NH; 3D REMARK 210 CBCANH; 3D HBHANH; 2D 1H-15N REMARK 210 HSQC-IPAP-HN; 2D 1H-15N HSQC- REMARK 210 IPAP-CAHA; 2D 1H-15N HNCO-IPAP- REMARK 210 CACO; 2D HBCBCGCDHD; 2D REMARK 210 HBCBCGCDCEHE; 2D 1H-13C HSQC-CT REMARK 210 AROMATICS REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANALYSIS 1.0, AZARA 2.7, CNS REMARK 210 1.1, CYANA 2.1, XWINNMR 3.6 REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 GLU A 14 REMARK 465 ALA A 15 REMARK 465 GLU A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 GLY A 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 9 LEU A 120 N LEU A 120 CA -0.124 REMARK 500 11 LEU A 120 N LEU A 120 CA -0.125 REMARK 500 13 LEU A 24 N LEU A 24 CA -0.123 REMARK 500 13 LEU A 120 N LEU A 120 CA -0.177 REMARK 500 15 LEU A 120 N LEU A 120 CA -0.127 REMARK 500 16 LEU A 120 N LEU A 120 CA -0.122 REMARK 500 20 LEU A 120 N LEU A 120 CA -0.125 REMARK 500 23 LEU A 120 N LEU A 120 CA -0.129 REMARK 500 26 LEU A 120 N LEU A 120 CA -0.162 REMARK 500 27 LEU A 120 N LEU A 120 CA -0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 19 VAL A 72 CA - CB - CG1 ANGL. DEV. = 11.1 DEGREES REMARK 500 21 VAL A 72 CA - CB - CG1 ANGL. DEV. = 9.3 DEGREES REMARK 500 22 VAL A 72 CA - CB - CG1 ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 38 13.27 -149.86 REMARK 500 1 ARG A 53 153.98 -40.11 REMARK 500 1 SER A 58 -77.64 -139.63 REMARK 500 1 LEU A 59 -40.35 -176.32 REMARK 500 1 GLN A 119 -93.97 -118.52 REMARK 500 1 LEU A 120 158.01 175.74 REMARK 500 1 ASN A 125 36.18 -89.37 REMARK 500 1 ASP A 130 -166.78 -101.40 REMARK 500 1 ASP A 137 -155.59 -107.98 REMARK 500 2 ASN A 22 33.56 -97.59 REMARK 500 2 ARG A 53 159.42 65.24 REMARK 500 2 PRO A 88 91.34 -69.86 REMARK 500 2 THR A 91 105.25 -38.06 REMARK 500 2 CYS A 114 -65.48 -140.38 REMARK 500 2 GLN A 119 -86.44 -122.85 REMARK 500 2 ASN A 125 30.49 -97.21 REMARK 500 2 ASN A 136 -149.67 61.11 REMARK 500 3 ASP A 39 -157.74 -103.97 REMARK 500 3 ARG A 53 144.23 68.35 REMARK 500 3 PRO A 88 71.63 -69.67 REMARK 500 3 PHE A 93 17.16 -140.25 REMARK 500 3 PHE A 104 79.91 -104.28 REMARK 500 3 GLN A 119 -84.00 -119.24 REMARK 500 3 LEU A 120 157.82 172.52 REMARK 500 3 ASP A 130 -164.48 -113.11 REMARK 500 3 ASN A 136 -176.23 70.54 REMARK 500 3 ASP A 137 -164.85 -113.85 REMARK 500 4 ASP A 39 -167.30 -100.50 REMARK 500 4 GLN A 40 -65.19 -131.30 REMARK 500 4 ARG A 53 158.61 69.83 REMARK 500 4 PRO A 88 45.27 -82.33 REMARK 500 4 TYR A 106 105.28 -53.80 REMARK 500 4 GLN A 119 -76.79 -109.47 REMARK 500 4 LEU A 120 162.68 174.10 REMARK 500 4 ASN A 125 33.56 -92.87 REMARK 500 4 ASP A 130 -165.38 -108.92 REMARK 500 5 ASP A 39 -150.76 -95.70 REMARK 500 5 GLN A 40 -79.55 -132.41 REMARK 500 5 ARG A 53 156.90 62.43 REMARK 500 5 PRO A 88 33.57 -84.70 REMARK 500 5 CYS A 114 -68.39 -122.06 REMARK 500 5 GLN A 119 -87.83 -112.43 REMARK 500 5 LEU A 120 145.20 -178.87 REMARK 500 5 ASN A 125 30.71 -87.07 REMARK 500 5 ASP A 137 -99.84 -102.37 REMARK 500 5 CYS A 141 94.72 -59.13 REMARK 500 6 GLN A 40 -59.57 -125.88 REMARK 500 6 CYS A 52 38.44 -95.93 REMARK 500 6 ARG A 53 163.23 62.22 REMARK 500 6 CYS A 114 -41.08 -130.68 REMARK 500 REMARK 500 THIS ENTRY HAS 295 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 6 ARG A 127 0.07 SIDE CHAIN REMARK 500 8 ARG A 28 0.10 SIDE CHAIN REMARK 500 10 ARG A 127 0.09 SIDE CHAIN REMARK 500 11 ARG A 28 0.15 SIDE CHAIN REMARK 500 13 ARG A 28 0.09 SIDE CHAIN REMARK 500 16 ARG A 28 0.09 SIDE CHAIN REMARK 500 18 ARG A 127 0.09 SIDE CHAIN REMARK 500 20 ARG A 28 0.08 SIDE CHAIN REMARK 500 25 ARG A 127 0.09 SIDE CHAIN REMARK 500 28 ARG A 127 0.08 SIDE CHAIN REMARK 500 29 ARG A 28 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JGX RELATED DB: PDB REMARK 900 RELATED ID: 2JGW RELATED DB: PDB REMARK 900 RELATED ID: 2BZM RELATED DB: PDB REMARK 900 RELATED ID: 2RLQ RELATED DB: PDB DBREF 2RLP A 20 142 UNP P08603 CFAH_HUMAN 20 142 SEQADV 2RLP GLU A 14 UNP P08603 EXPRESSION TAG SEQADV 2RLP ALA A 15 UNP P08603 EXPRESSION TAG SEQADV 2RLP GLU A 16 UNP P08603 EXPRESSION TAG SEQADV 2RLP ALA A 17 UNP P08603 EXPRESSION TAG SEQADV 2RLP ALA A 18 UNP P08603 EXPRESSION TAG SEQADV 2RLP GLY A 19 UNP P08603 EXPRESSION TAG SEQRES 1 A 129 GLU ALA GLU ALA ALA GLY ASP CYS ASN GLU LEU PRO PRO SEQRES 2 A 129 ARG ARG ASN THR GLU ILE LEU THR GLY SER TRP SER ASP SEQRES 3 A 129 GLN THR TYR PRO GLU GLY THR GLN ALA ILE TYR LYS CYS SEQRES 4 A 129 ARG PRO GLY TYR ARG SER LEU GLY ASN VAL ILE MET VAL SEQRES 5 A 129 CYS ARG LYS GLY GLU TRP VAL ALA LEU ASN PRO LEU ARG SEQRES 6 A 129 LYS CYS GLN LYS ARG PRO CYS GLY HIS PRO GLY ASP THR SEQRES 7 A 129 PRO PHE GLY THR PHE THR LEU THR GLY GLY ASN VAL PHE SEQRES 8 A 129 GLU TYR GLY VAL LYS ALA VAL TYR THR CYS ASN GLU GLY SEQRES 9 A 129 TYR GLN LEU LEU GLY GLU ILE ASN TYR ARG GLU CYS ASP SEQRES 10 A 129 THR ASP GLY TRP THR ASN ASP ILE PRO ILE CYS GLU SHEET 1 A 4 GLU A 31 THR A 34 0 SHEET 2 A 4 GLN A 47 CYS A 52 -1 O LYS A 51 N ILE A 32 SHEET 3 A 4 VAL A 62 ARG A 67 -1 O MET A 64 N ALA A 48 SHEET 4 A 4 GLU A 70 ALA A 73 -1 O VAL A 72 N VAL A 65 SHEET 1 B 2 TYR A 56 ARG A 57 0 SHEET 2 B 2 GLN A 81 LYS A 82 -1 O GLN A 81 N ARG A 57 SHEET 1 C 4 THR A 95 THR A 99 0 SHEET 2 C 4 LYS A 109 THR A 113 -1 O THR A 113 N THR A 95 SHEET 3 C 4 TYR A 126 ASP A 130 -1 O ARG A 127 N ALA A 110 SHEET 4 C 4 GLY A 133 TRP A 134 -1 O GLY A 133 N ASP A 130 SSBOND 1 CYS A 21 CYS A 66 1555 1555 2.02 SSBOND 2 CYS A 52 CYS A 80 1555 1555 2.03 SSBOND 3 CYS A 85 CYS A 129 1555 1555 2.03 SSBOND 4 CYS A 114 CYS A 141 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1