HEADER PROTEIN BINDING 20-SEP-07 2RM4 TITLE SOLUTION STRUCTURE OF THE LSM DOMAIN OF DM EDC3 (ENHANCER OF DECAPPING TITLE 2 3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CG6311-PB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LSM DOMAIN, RESIDUES UNP 1-101; COMPND 5 SYNONYM: DM EDC3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) ROSETTA II; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM60 KEYWDS ENHANCER OF MRNA DECAPPING, P-BODY COMPONENT, SM-LIKE PROTEIN, KEYWDS 2 PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 22 AUTHOR V.TRUFFAULT,M.COLES,F.TRITSCHLER REVDAT 4 16-MAR-22 2RM4 1 REMARK SEQADV REVDAT 3 24-FEB-09 2RM4 1 VERSN REVDAT 2 01-JAN-08 2RM4 1 JRNL REVDAT 1 30-OCT-07 2RM4 0 JRNL AUTH F.TRITSCHLER,A.EULALIO,V.TRUFFAULT,M.D.HARTMANN,S.HELMS, JRNL AUTH 2 S.SCHMIDT,M.COLES,E.IZAURRALDE,O.WEICHENRIEDER JRNL TITL A DIVERGENT SM FOLD IN EDC3 PROTEINS MEDIATES DCP1 BINDING JRNL TITL 2 AND P-BODY TARGETING JRNL REF MOL.CELL.BIOL. V. 27 8600 2007 JRNL REFN ISSN 0270-7306 JRNL PMID 17923697 JRNL DOI 10.1128/MCB.01506-07 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.6, X-PLOR NIH 2.9.4A REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RM4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000150023. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM [U-100% 15N] DM EDC3, 90% REMARK 210 H2O/10% D2O; 0.8MM [U-100% 13C; REMARK 210 U-100% 15N] DM EDC3, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 CCH-COSY; 3D CCH-TOCSY; 3D CNH- REMARK 210 NOESY; 3D 1H-13C NOESY; 3D HNCA; REMARK 210 3D HN(CA)CO; 3D HNCO; 3D HNHA; REMARK 210 3D HNHB; 3D 1H-15N NOESY; 3D NNH- REMARK 210 NOESY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.6, SPARKY 3.110, PASTA REMARK 210 V0.1, X-PLOR NIH 2.9.4A REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 22 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 76 74.04 53.31 REMARK 500 1 HIS A 95 -175.38 52.38 REMARK 500 2 PRO A 3 99.56 -60.21 REMARK 500 3 THR A 4 20.32 -147.29 REMARK 500 3 ASP A 18 170.28 -59.10 REMARK 500 4 ALA A 71 -171.93 -62.95 REMARK 500 5 ALA A 71 -41.61 -169.81 REMARK 500 6 LYS A 50 52.65 -91.76 REMARK 500 7 ASP A 18 170.34 -59.11 REMARK 500 8 THR A 4 26.88 -151.13 REMARK 500 8 ASP A 74 -166.25 -169.29 REMARK 500 9 ALA A 71 97.08 51.81 REMARK 500 10 THR A 4 28.24 -149.83 REMARK 500 10 ASP A 18 170.43 -58.94 REMARK 500 11 HIS A 95 170.20 54.85 REMARK 500 12 PRO A 3 85.92 -61.10 REMARK 500 12 ASP A 18 170.01 -58.96 REMARK 500 13 PRO A 3 83.18 -63.10 REMARK 500 13 SER A 97 92.52 51.98 REMARK 500 14 LYS A 87 177.15 53.85 REMARK 500 15 ASP A 18 175.08 -59.89 REMARK 500 15 LYS A 92 -64.84 -96.78 REMARK 500 16 THR A 4 16.96 -146.84 REMARK 500 17 PRO A 3 85.40 -67.50 REMARK 500 17 ALA A 71 -84.37 58.12 REMARK 500 17 ALA A 80 -174.50 51.95 REMARK 500 18 PRO A 3 68.01 -69.95 REMARK 500 18 ASP A 18 170.76 -59.30 REMARK 500 18 HIS A 95 -44.32 -135.53 REMARK 500 19 PRO A 3 78.27 -68.13 REMARK 500 20 PRO A 3 98.12 -61.27 REMARK 500 20 ALA A 71 -162.57 -61.75 REMARK 500 20 VAL A 84 97.79 53.34 REMARK 500 20 SER A 97 94.44 51.67 REMARK 500 21 VAL A 91 97.17 52.99 REMARK 500 22 ASP A 18 170.21 -58.93 REMARK 500 22 ARG A 49 -65.90 -171.93 REMARK 500 22 ALA A 80 -52.63 -174.46 REMARK 500 22 LYS A 87 161.99 57.06 REMARK 500 22 ASN A 98 171.05 55.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VC8 RELATED DB: PDB REMARK 900 HUMAN HOMOLOGUE DBREF 2RM4 A 1 101 UNP Q9VVI2 Q9VVI2_DROME 1 101 SEQADV 2RM4 GLY A -1 UNP Q9VVI2 EXPRESSION TAG SEQADV 2RM4 ALA A 0 UNP Q9VVI2 EXPRESSION TAG SEQRES 1 A 103 GLY ALA MET GLY PRO THR ASP GLN ASP TRP ILE GLY CYS SEQRES 2 A 103 ALA VAL SER ILE ALA CYS ASP GLU VAL LEU GLY VAL PHE SEQRES 3 A 103 GLN GLY LEU ILE LYS GLN ILE SER ALA GLU GLU ILE THR SEQRES 4 A 103 ILE VAL ARG ALA PHE ARG ASN GLY VAL PRO LEU ARG LYS SEQRES 5 A 103 GLN ASN ALA GLU VAL VAL LEU LYS CYS THR ASP ILE ARG SEQRES 6 A 103 SER ILE ASP LEU ILE GLU PRO ALA LYS GLN ASP LEU ASP SEQRES 7 A 103 GLY HIS THR ALA PRO PRO PRO VAL VAL ASN LYS PRO THR SEQRES 8 A 103 PRO VAL LYS LEU PRO HIS PHE SER ASN ILE LEU GLY HELIX 1 1 ASP A 5 ILE A 9 5 5 SHEET 1 A 3 VAL A 46 PRO A 47 0 SHEET 2 A 3 GLU A 35 ARG A 43 -1 N ARG A 43 O VAL A 46 SHEET 3 A 3 VAL A 55 LYS A 58 -1 O VAL A 55 N ILE A 38 SHEET 1 B 5 VAL A 46 PRO A 47 0 SHEET 2 B 5 GLU A 35 ARG A 43 -1 N ARG A 43 O VAL A 46 SHEET 3 B 5 VAL A 23 SER A 32 -1 N LYS A 29 O THR A 37 SHEET 4 B 5 ALA A 12 CYS A 17 -1 N ILE A 15 O PHE A 24 SHEET 5 B 5 ILE A 62 GLU A 69 -1 O ASP A 66 N SER A 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1