HEADER HYDROLASE 23-OCT-07 2RMJ TITLE SOLUTION STRUCTURE OF RIG-I C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ATP-DEPENDENT RNA HELICASE DDX58; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: DEAD-BOX PROTEIN 58, RETINOIC ACID-INDUCIBLE GENE 1 PROTEIN, COMPND 6 RIG-1, RIG-I; COMPND 7 EC: 3.6.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDX58; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX KEYWDS RNA BINDING PROTEIN, ALTERNATIVE SPLICING, ANTIVIRAL DEFENSE, ATP- KEYWDS 2 BINDING, CYTOPLASM, HELICASE, HYDROLASE, IMMUNE RESPONSE, INNATE KEYWDS 3 IMMUNITY, INTERFERON INDUCTION, NUCLEOTIDE-BINDING, POLYMORPHISM, KEYWDS 4 RNA-BINDING, UBL CONJUGATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TAKAHASI,M.YONEYAMA,T.NIHISHORI,R.HIRAI,R.NARITA,M.GALE JR., AUTHOR 2 T.FUJITA,F.INAGAKI REVDAT 4 29-MAY-24 2RMJ 1 REMARK REVDAT 3 16-MAR-22 2RMJ 1 REMARK REVDAT 2 24-FEB-09 2RMJ 1 VERSN REVDAT 1 25-MAR-08 2RMJ 0 JRNL AUTH K.TAKAHASI,M.YONEYAMA,T.NISHIHORI,R.HIRAI,H.KUMETA,R.NARITA, JRNL AUTH 2 M.GALE JR.,F.INAGAKI,T.FUJITA JRNL TITL NONSELF RNA-SENSING MECHANISM OF RIG-I HELICASE AND JRNL TITL 2 ACTIVATION OF ANTIVIRAL IMMUNE RESPONSES JRNL REF MOL.CELL V. 29 428 2008 JRNL REFN ISSN 1097-2765 JRNL PMID 18242112 JRNL DOI 10.1016/J.MOLCEL.2007.11.028 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RMJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000150035. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.25 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.5MM [U-100% 13C; U-100% 15N] REMARK 210 RIG-I, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HN(CO)CA; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; (HB) REMARK 210 CB(CGCD)HD; HNCAHA REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, DISTANCE REMARK 210 GEOMETRY, SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 801 -75.20 -74.95 REMARK 500 1 GLU A 804 65.71 38.63 REMARK 500 1 ARG A 811 -28.93 -39.89 REMARK 500 1 LYS A 812 -77.46 -42.39 REMARK 500 1 LEU A 816 135.80 -39.95 REMARK 500 1 CYS A 818 -173.53 -173.74 REMARK 500 1 PRO A 846 -89.66 -74.98 REMARK 500 1 HIS A 847 146.71 81.72 REMARK 500 1 PRO A 850 -84.36 -74.97 REMARK 500 1 ARG A 866 -176.31 -54.13 REMARK 500 1 SER A 870 34.69 -91.38 REMARK 500 1 THR A 881 -72.52 -71.45 REMARK 500 1 GLU A 890 31.50 -91.39 REMARK 500 1 THR A 899 -47.88 -137.54 REMARK 500 1 ASP A 910 30.19 -93.01 REMARK 500 2 PRO A 801 -90.76 -74.97 REMARK 500 2 LYS A 812 -76.59 -41.44 REMARK 500 2 GLU A 827 38.11 70.00 REMARK 500 2 PHE A 842 -169.93 -119.20 REMARK 500 2 PRO A 846 -162.19 -74.99 REMARK 500 2 HIS A 847 151.76 88.13 REMARK 500 2 PRO A 848 -162.49 -75.02 REMARK 500 2 PRO A 850 -162.60 -75.05 REMARK 500 2 GLN A 852 -67.83 -105.09 REMARK 500 2 SER A 855 -76.34 -52.94 REMARK 500 2 ARG A 866 170.24 -54.45 REMARK 500 2 SER A 870 34.61 -91.42 REMARK 500 2 THR A 881 -78.90 -37.99 REMARK 500 2 THR A 899 -47.50 -137.23 REMARK 500 2 TYR A 905 -177.49 -63.78 REMARK 500 2 ASP A 910 45.65 -97.28 REMARK 500 3 PRO A 801 -89.34 -75.01 REMARK 500 3 LYS A 812 -77.47 -47.32 REMARK 500 3 LYS A 814 70.18 47.44 REMARK 500 3 CYS A 818 -173.16 -172.30 REMARK 500 3 PHE A 842 -169.96 -118.12 REMARK 500 3 ALA A 860 148.21 -173.01 REMARK 500 3 ARG A 866 -177.97 -60.54 REMARK 500 3 GLU A 890 34.74 -90.55 REMARK 500 4 PRO A 801 -81.90 -75.01 REMARK 500 4 GLU A 804 -53.09 -128.11 REMARK 500 4 LYS A 812 -78.54 -44.11 REMARK 500 4 CYS A 818 -172.68 -172.70 REMARK 500 4 GLU A 828 50.66 75.27 REMARK 500 4 HIS A 847 91.34 -175.41 REMARK 500 4 SER A 854 97.20 -44.01 REMARK 500 4 SER A 855 -177.07 -176.24 REMARK 500 4 ARG A 866 -175.52 -57.28 REMARK 500 4 THR A 881 -74.53 -36.66 REMARK 500 4 GLU A 890 32.94 -90.74 REMARK 500 REMARK 500 THIS ENTRY HAS 282 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2RMJ A 792 925 UNP O95786 DDX58_HUMAN 792 925 SEQRES 1 A 134 ASP SER GLN GLU LYS PRO LYS PRO VAL PRO ASP LYS GLU SEQRES 2 A 134 ASN LYS LYS LEU LEU CYS ARG LYS CYS LYS ALA LEU ALA SEQRES 3 A 134 CYS TYR THR ALA ASP VAL ARG VAL ILE GLU GLU CYS HIS SEQRES 4 A 134 TYR THR VAL LEU GLY ASP ALA PHE LYS GLU CYS PHE VAL SEQRES 5 A 134 SER ARG PRO HIS PRO LYS PRO LYS GLN PHE SER SER PHE SEQRES 6 A 134 GLU LYS ARG ALA LYS ILE PHE CYS ALA ARG GLN ASN CYS SEQRES 7 A 134 SER HIS ASP TRP GLY ILE HIS VAL LYS TYR LYS THR PHE SEQRES 8 A 134 GLU ILE PRO VAL ILE LYS ILE GLU SER PHE VAL VAL GLU SEQRES 9 A 134 ASP ILE ALA THR GLY VAL GLN THR LEU TYR SER LYS TRP SEQRES 10 A 134 LYS ASP PHE HIS PHE GLU LYS ILE PRO PHE ASP PRO ALA SEQRES 11 A 134 GLU MET SER LYS HELIX 1 1 GLY A 835 CYS A 841 1 7 HELIX 2 2 LYS A 888 PHE A 892 5 5 HELIX 3 3 LYS A 907 PHE A 911 5 5 HELIX 4 4 ASP A 919 SER A 924 1 6 SHEET 1 A 3 ALA A 815 TYR A 819 0 SHEET 2 A 3 LYS A 806 CYS A 810 -1 N LEU A 808 O CYS A 818 SHEET 3 A 3 VAL A 893 ASP A 896 -1 O VAL A 893 N LEU A 809 SHEET 1 B 2 VAL A 823 VAL A 825 0 SHEET 2 B 2 TYR A 831 VAL A 833 -1 O THR A 832 N ARG A 824 SHEET 1 C 4 PHE A 842 ARG A 845 0 SHEET 2 C 4 GLU A 857 CYS A 864 -1 O PHE A 863 N VAL A 843 SHEET 3 C 4 ASP A 872 LYS A 878 -1 O HIS A 876 N ALA A 860 SHEET 4 C 4 PRO A 885 VAL A 886 -1 O VAL A 886 N ILE A 875 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1