HEADER MEMBRANE PROTEIN/TRANSFERASE 25-OCT-07 2RMK TITLE RAC1/PRK1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P21-RAC1, RAS-LIKE PROTEIN TC25, CELL MIGRATION-INDUCING COMPND 5 GENE 5 PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SERINE/THREONINE-PROTEIN KINASE N1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: HR1B DOMAIN, REM 2, UNP RESIDUES 122-199; COMPND 12 SYNONYM: PRK1_HR1B, PROTEIN KINASE C-LIKE 1, PROTEIN-KINASE C-RELATED COMPND 13 KINASE 1, PROTEIN KINASE C-LIKE PKN, SERINE-THREONINE PROTEIN KINASE COMPND 14 N, PROTEIN KINASE PKN-ALPHA; COMPND 15 EC: 2.7.11.13; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-2T; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: PKN1, PKN, PRK1, PRKCL1; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PGEX-3X KEYWDS G PROTEIN, EFFECTOR, ADP-RIBOSYLATION, ALTERNATIVE SPLICING, GTP- KEYWDS 2 BINDING, LIPOPROTEIN, MEMBRANE, METHYLATION, NUCLEOTIDE-BINDING, KEYWDS 3 POLYMORPHISM, PRENYLATION, ATP-BINDING, CYTOPLASM, KINASE, KEYWDS 4 PHOSPHORYLATION, SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, KEYWDS 5 MEMBRANE PROTEIN-TRANSFERASE COMPLEX EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR R.MODHA,L.J.CAMPBELL,D.NIETLISPACH,H.R.BUHECHA,D.OWEN,H.R.MOTT REVDAT 5 29-MAY-24 2RMK 1 REMARK REVDAT 4 10-NOV-21 2RMK 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2RMK 1 VERSN REVDAT 2 29-JAN-08 2RMK 1 JRNL REVDAT 1 13-NOV-07 2RMK 0 JRNL AUTH R.MODHA,L.J.CAMPBELL,D.NIETLISPACH,H.R.BUHECHA,D.OWEN, JRNL AUTH 2 H.R.MOTT JRNL TITL THE RAC1 POLYBASIC REGION IS REQUIRED FOR INTERACTION WITH JRNL TITL 2 ITS EFFECTOR PRK1 JRNL REF J.BIOL.CHEM. V. 283 1492 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18006505 JRNL DOI 10.1074/JBC.M706760200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AZARA 2.7, CNS 1.1 REMARK 3 AUTHORS : BOUCHER (AZARA), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RMK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000150036. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.225 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM [U-13C; U-15N; U-2H] RAC1; REMARK 210 0.6MM PRK1 HR1B; 0.7MM REMARK 210 PHOSPHOMETHYLPHOSPHONIC ACID REMARK 210 GUANYLATE ESTER; 90% H2O, 10% REMARK 210 D2O; 0.6MM [U-100% 13C; U-100% REMARK 210 15N] RAC1; 0.6MM PRK1 HR1B; REMARK 210 0.7MM PHOSPHOMETHYLPHOSPHONIC REMARK 210 ACID GUANYLATE ESTER; 90% H2O, REMARK 210 10% D2O; 0.6MM [U-100% 15N] RAC1; REMARK 210 0.6MM PRK1 HR1B; 0.7MM REMARK 210 PHOSPHOMETHYLPHOSPHONIC ACID REMARK 210 GUANYLATE ESTER; 90% H2O, 10% REMARK 210 D2O; 0.6MM [U-100% 13C; U-100% REMARK 210 15N] RAC1; 0.6MM PRK1 RAC1; REMARK 210 0.7MM PHOSPHOMETHYLPHOSPHONIC REMARK 210 ACID GUANYLATE ESTER; 90% H2O, REMARK 210 10% D2O; 0.6MM [U-100% 15N] HR1B; REMARK 210 0.6MM PRK1 RAC1; 0.7MM REMARK 210 PHOSPHOMETHYLPHOSPHONIC ACID REMARK 210 GUANYLATE ESTER; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D 13C-EDITED; 13C- REMARK 210 SEPARATED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG, ARIA 1.2, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 2 97.45 -56.96 REMARK 500 1 ALA A 27 118.87 -170.74 REMARK 500 1 GLU A 31 127.23 64.41 REMARK 500 1 VAL A 36 -41.51 -131.74 REMARK 500 1 ASP A 38 -45.33 -145.27 REMARK 500 1 TYR A 40 91.54 -171.23 REMARK 500 1 THR A 75 116.13 -36.13 REMARK 500 1 LYS A 116 70.08 56.64 REMARK 500 1 LYS A 153 148.48 -171.79 REMARK 500 1 CYS A 178 -76.13 -80.43 REMARK 500 1 PRO A 179 177.78 -48.44 REMARK 500 1 PRO A 181 -171.67 -61.63 REMARK 500 1 VAL A 182 -101.68 -120.98 REMARK 500 1 LYS A 183 96.87 52.03 REMARK 500 1 LYS A 186 118.96 -161.28 REMARK 500 1 PRO B 121 -98.58 -75.46 REMARK 500 1 THR B 123 38.68 -79.46 REMARK 500 1 LYS B 158 -91.96 58.67 REMARK 500 2 GLN A 2 97.87 -55.24 REMARK 500 2 ALA A 27 120.69 -172.25 REMARK 500 2 THR A 35 -11.85 -171.15 REMARK 500 2 VAL A 36 -88.04 -74.44 REMARK 500 2 ASP A 38 -71.79 -172.70 REMARK 500 2 ASN A 39 106.03 -170.54 REMARK 500 2 ALA A 59 -174.08 61.43 REMARK 500 2 ASP A 65 -84.47 54.82 REMARK 500 2 LEU A 67 35.83 -83.65 REMARK 500 2 THR A 75 123.22 -36.26 REMARK 500 2 THR A 115 175.38 -55.54 REMARK 500 2 LYS A 153 149.01 -171.51 REMARK 500 2 ARG A 163 49.35 -83.40 REMARK 500 2 PRO A 179 178.01 -58.13 REMARK 500 2 LYS A 183 -85.13 -141.85 REMARK 500 2 LYS A 184 95.77 56.74 REMARK 500 2 CYS A 189 7.92 -158.73 REMARK 500 2 PRO B 121 -101.89 -68.31 REMARK 500 2 ASN B 154 172.92 59.98 REMARK 500 2 THR B 157 122.62 64.66 REMARK 500 2 GLU B 194 23.74 -157.86 REMARK 500 2 ASN B 195 -51.09 -126.70 REMARK 500 2 GLN B 196 -70.70 -55.47 REMARK 500 2 ALA B 197 15.58 58.06 REMARK 500 3 GLN A 2 97.18 -63.75 REMARK 500 3 ALA A 27 110.80 -168.53 REMARK 500 3 PRO A 34 173.16 -58.07 REMARK 500 3 ASN A 39 89.35 57.84 REMARK 500 3 THR A 58 -162.72 -102.10 REMARK 500 3 ALA A 59 -164.50 64.37 REMARK 500 3 ASP A 65 -80.54 63.93 REMARK 500 3 ARG A 68 -51.81 -176.21 REMARK 500 REMARK 500 THIS ENTRY HAS 526 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 194 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 THR A 35 OG1 91.6 REMARK 620 3 GCP A 193 O2B 83.1 173.3 REMARK 620 4 GCP A 193 O2G 171.9 94.1 91.6 REMARK 620 5 HOH A 195 O 95.7 86.5 90.0 90.3 REMARK 620 6 HOH A 196 O 84.1 93.4 90.1 89.8 179.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GCP A 193 DBREF 2RMK A 1 192 UNP P63000 RAC1_HUMAN 1 192 DBREF 2RMK B 122 199 UNP Q16512 PKN1_HUMAN 122 199 SEQADV 2RMK LEU A 61 UNP P63000 GLN 61 ENGINEERED MUTATION SEQADV 2RMK GLY B 119 UNP Q16512 EXPRESSION TAG SEQADV 2RMK ILE B 120 UNP Q16512 EXPRESSION TAG SEQADV 2RMK PRO B 121 UNP Q16512 EXPRESSION TAG SEQRES 1 A 192 MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY ALA SEQRES 2 A 192 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 A 192 ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP ASN SEQRES 4 A 192 TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL ASN SEQRES 5 A 192 LEU GLY LEU TRP ASP THR ALA GLY LEU GLU ASP TYR ASP SEQRES 6 A 192 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 A 192 LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE GLU SEQRES 8 A 192 ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS HIS SEQRES 9 A 192 CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS LEU SEQRES 10 A 192 ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU LYS SEQRES 11 A 192 GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY LEU SEQRES 12 A 192 ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU GLU SEQRES 13 A 192 CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL PHE SEQRES 14 A 192 ASP GLU ALA ILE ARG ALA VAL LEU CYS PRO PRO PRO VAL SEQRES 15 A 192 LYS LYS ARG LYS ARG LYS CYS LEU LEU LEU SEQRES 1 B 81 GLY ILE PRO ALA THR ASN LEU SER ARG VAL ALA GLY LEU SEQRES 2 B 81 GLU LYS GLN LEU ALA ILE GLU LEU LYS VAL LYS GLN GLY SEQRES 3 B 81 ALA GLU ASN MET ILE GLN THR TYR SER ASN GLY SER THR SEQRES 4 B 81 LYS ASP ARG LYS LEU LEU LEU THR ALA GLN GLN MET LEU SEQRES 5 B 81 GLN ASP SER LYS THR LYS ILE ASP ILE ILE ARG MET GLN SEQRES 6 B 81 LEU ARG ARG ALA LEU GLN ALA ASP GLN LEU GLU ASN GLN SEQRES 7 B 81 ALA ALA PRO HET MG A 194 1 HET GCP A 193 46 HETNAM MG MAGNESIUM ION HETNAM GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER FORMUL 3 MG MG 2+ FORMUL 4 GCP C11 H18 N5 O13 P3 FORMUL 5 HOH *2(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 GLU A 62 ARG A 66 5 5 HELIX 3 3 LEU A 70 THR A 75 1 6 HELIX 4 4 SER A 86 CYS A 105 1 20 HELIX 5 5 ASP A 122 LYS A 132 1 11 HELIX 6 6 THR A 138 ILE A 149 1 12 HELIX 7 7 GLY A 164 CYS A 178 1 15 HELIX 8 8 THR B 123 ASN B 154 1 32 HELIX 9 9 ASP B 159 LEU B 193 1 35 SHEET 1 A 6 SER A 41 VAL A 46 0 SHEET 2 A 6 LYS A 49 ASP A 57 -1 O VAL A 51 N VAL A 44 SHEET 3 A 6 GLN A 2 GLY A 10 1 N ILE A 4 O ASN A 52 SHEET 4 A 6 VAL A 77 CYS A 81 1 O CYS A 81 N VAL A 9 SHEET 5 A 6 ILE A 111 GLY A 114 1 O VAL A 113 N ILE A 80 SHEET 6 A 6 LYS A 153 GLU A 156 1 O LEU A 155 N LEU A 112 LINK OG1 THR A 17 MG MG A 194 1555 1555 2.41 LINK OG1 THR A 35 MG MG A 194 1555 1555 2.44 LINK O2B GCP A 193 MG MG A 194 1555 1555 2.30 LINK O2G GCP A 193 MG MG A 194 1555 1555 2.30 LINK MG MG A 194 O HOH A 195 1555 1555 2.30 LINK MG MG A 194 O HOH A 196 1555 1555 2.30 SITE 1 AC1 5 THR A 17 THR A 35 GCP A 193 HOH A 195 SITE 2 AC1 5 HOH A 196 SITE 1 AC2 15 VAL A 14 GLY A 15 LYS A 16 THR A 17 SITE 2 AC2 15 CYS A 18 PHE A 28 THR A 35 ALA A 59 SITE 3 AC2 15 GLY A 60 LYS A 116 ASP A 118 SER A 158 SITE 4 AC2 15 ALA A 159 LEU A 160 MG A 194 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1