HEADER PROTEIN FIBRIL 29-NOV-07 2RMW TITLE SOLUTION STRUCTURE OF SYNTHETIC 26-MER PEPTIDE CONTAINING 142-166 TITLE 2 SHEEP PRION PROTEIN SEGMENT AND C-TERMINAL CYSTEINE WITH R156A TITLE 3 MUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 142-167; COMPND 5 SYNONYM: R15, PRP, CD230 ANTIGEN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS ARGININE 156, PRION PEPTIDE, DISEASE MUTATION, GLYCOPROTEIN, GPI- KEYWDS 2 ANCHOR, LIPOPROTEIN, MEMBRANE, POLYMORPHISM, PROTEIN FIBRIL EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR G.BERTHO,G.BOUVIER,G.HUI BON HOA,J.-P.GIRAULT REVDAT 4 29-MAY-24 2RMW 1 REMARK REVDAT 3 10-NOV-21 2RMW 1 REMARK SEQADV REVDAT 2 24-FEB-09 2RMW 1 VERSN REVDAT 1 18-DEC-07 2RMW 0 JRNL AUTH G.BERTHO,G.BOUVIER,G.HUI BON HOA,J.-P.GIRAULT JRNL TITL KEY ROLE OF THE RESIDUE 155 IN THE MECHANISM OF PRION JRNL TITL 2 TRANSCONFORMATION HIGHLIGHTED BY THE STUDY OF SHEEP MUTANT JRNL TITL 3 PEPTIDES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RMW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000150046. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 2MM PEPTIDE, 10MM PHOSPHATE REMARK 210 BUFFER, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 145 -96.43 -111.60 REMARK 500 1 GLU A 146 -75.47 -127.43 REMARK 500 1 ARG A 148 -68.18 -170.04 REMARK 500 1 TYR A 149 -161.82 -112.17 REMARK 500 1 TYR A 150 42.51 -74.49 REMARK 500 1 ASN A 153 -67.72 -136.85 REMARK 500 1 MET A 154 96.18 -162.70 REMARK 500 1 ALA A 156 -55.49 -166.56 REMARK 500 1 GLN A 160 -69.13 -133.94 REMARK 500 1 TYR A 162 -75.26 -100.90 REMARK 500 1 TYR A 163 -72.03 -152.28 REMARK 500 2 TYR A 145 -97.59 -140.22 REMARK 500 2 GLU A 146 -85.21 -105.29 REMARK 500 2 ARG A 148 -81.52 -158.63 REMARK 500 2 TYR A 149 -153.60 -118.68 REMARK 500 2 TYR A 150 35.52 -74.95 REMARK 500 2 MET A 154 89.91 -161.97 REMARK 500 2 ASN A 159 33.15 -76.34 REMARK 500 2 TYR A 162 36.72 -143.21 REMARK 500 3 TYR A 145 -139.24 -135.54 REMARK 500 3 GLU A 146 6.16 -69.87 REMARK 500 3 ASP A 147 -81.08 -161.85 REMARK 500 3 TYR A 149 -87.75 -113.42 REMARK 500 3 TYR A 150 28.89 -157.85 REMARK 500 3 ASN A 153 -91.43 -108.41 REMARK 500 3 TYR A 155 -35.20 -149.39 REMARK 500 3 ALA A 156 -41.90 -145.75 REMARK 500 3 GLN A 160 -57.57 -170.72 REMARK 500 3 VAL A 161 -56.21 -134.03 REMARK 500 3 TYR A 162 89.72 -157.78 REMARK 500 3 TYR A 163 -90.88 -155.38 REMARK 500 3 ARG A 164 -35.01 -170.23 REMARK 500 3 PRO A 165 -127.08 -69.87 REMARK 500 4 GLU A 146 -81.99 -170.28 REMARK 500 4 ARG A 148 -90.63 -158.89 REMARK 500 4 TYR A 149 -54.52 -127.25 REMARK 500 4 TYR A 150 35.94 -167.11 REMARK 500 4 ASN A 153 -83.07 -95.43 REMARK 500 4 MET A 154 94.48 -170.39 REMARK 500 4 ALA A 156 -28.75 -170.13 REMARK 500 4 PRO A 158 79.37 -69.71 REMARK 500 4 ASN A 159 47.55 -75.60 REMARK 500 4 PRO A 165 -176.49 -69.90 REMARK 500 5 ASN A 143 75.19 -119.53 REMARK 500 5 TYR A 145 -163.58 -122.52 REMARK 500 5 ARG A 148 -76.35 -170.06 REMARK 500 5 TYR A 149 -162.82 -126.06 REMARK 500 5 TYR A 150 22.57 -69.94 REMARK 500 5 ASN A 153 -90.20 -83.66 REMARK 500 5 MET A 154 141.59 -170.68 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 ARG A 151 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RMV RELATED DB: PDB DBREF 2RMW A 142 166 UNP P23907 PRIO_SHEEP 145 169 SEQADV 2RMW ALA A 156 UNP P23907 ARG 159 ENGINEERED MUTATION SEQADV 2RMW CYS A 167 UNP P23907 EXPRESSION TAG SEQRES 1 A 26 GLY ASN ASP TYR GLU ASP ARG TYR TYR ARG GLU ASN MET SEQRES 2 A 26 TYR ALA TYR PRO ASN GLN VAL TYR TYR ARG PRO VAL CYS CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1