HEADER SIGNALING PROTEIN 30-NOV-07 2RMX TITLE SOLUTION STRUCTURE OF THE SHP-1 C-TERMINAL SH2 DOMAIN COMPLEXED WITH A TITLE 2 TYROSINE-PHOSPHORYLATED PEPTIDE FROM NKG2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1C, PTP-1C, HEMATOPOIETIC CELL COMPND 6 PROTEIN-TYROSINE PHOSPHATASE, SH-PTP1, PROTEIN-TYROSINE PHOSPHATASE COMPND 7 SHP-1; COMPND 8 EC: 3.1.3.48; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: NKG2-A/NKG2-B TYPE II INTEGRAL MEMBRANE PROTEIN; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: TYROSINE PHOSPHORYLATION SITE, UNP RESIDUES 1-15; COMPND 14 SYNONYM: NKG2-A/B-ACTIVATING NK RECEPTOR, NK CELL RECEPTOR A, CD159A COMPND 15 ANTIGEN; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN6, HCP, PTP1C; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: P040607-04; SOURCE 9 OTHER_DETAILS: E. COLI CELL-FREE; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: PEPTIDE SYNTHETIC; THIS SEQUENCE OCCURS NATURALLY IN SOURCE 13 HUMANS KEYWDS SH2 DOMAIN, PROTEIN-PEPTIDE COMPLEX, PHOSPHORYLATED PEPTIDE KEYWDS 2 RECOGNITION, PHOSPHOTYROSINE BINDING DOMAIN, SIGNAL TRANSDUCTION, KEYWDS 3 ALTERNATIVE SPLICING, CYTOPLASM, HYDROLASE, NUCLEUS, PHOSPHOPROTEIN, KEYWDS 4 PROTEIN PHOSPHATASE, GLYCOPROTEIN, LECTIN, MEMBRANE, RECEPTOR, KEYWDS 5 SIGNAL-ANCHOR, TRANSMEMBRANE, SIGNALING PROTEIN, STRUCTURAL KEYWDS 6 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 7 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 8 INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.KASAI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 16-MAR-22 2RMX 1 REMARK SEQADV LINK REVDAT 1 02-DEC-08 2RMX 0 JRNL AUTH S.KOSHIBA,T.KASAI,M.SATO,T.TOMIZAWA,Y.MOTODA,N.TOCHIO, JRNL AUTH 2 N.KOBAYASHI,T.HARADA,M.INOUE,A.TANAKA,T.KIGAWA,S.YOKOYAMA JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF THE TWO NKG2A JRNL TITL 2 IMMUNORECEPTOR TYROSINE-BASED INHIBITORY MOTIFS (ITIMS) BY JRNL TITL 3 THE C-TERMINAL SH2 DOMAIN OF PROTEIN TYROSINE PHOSPHATASE JRNL TITL 4 SHP-1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000150047. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM [U-13C; U-15N] SHP-1 C REMARK 210 -TERMINAL SH2 DOMAIN; 0.8MM REMARK 210 TYROSINE-PHOSPHORYLATED PEPTIDE; REMARK 210 20MM [U-2H] TRIS; 100MM SODIUM REMARK 210 CHLORIDE; 0.02% SODIUM AZIDE; REMARK 210 1MM [U-2H] DTT; 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D F1-15N,13C-FILTERED REMARK 210 15N-SEPARATED NOESY; 3D F1-15N, REMARK 210 13C-FILTERED 13C-SEPARATED NOESY; REMARK 210 2D F2-15N,13C-FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9810, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 36 -174.82 -51.90 REMARK 500 1 SER A 38 25.99 42.02 REMARK 500 1 ALA A 54 -72.91 -122.75 REMARK 500 1 PRO A 56 83.75 -69.72 REMARK 500 1 LEU A 60 146.38 -39.05 REMARK 500 1 THR A 95 -69.63 -98.29 REMARK 500 1 PRO A 110 -164.71 -69.68 REMARK 500 1 ASN B 3 84.15 -66.70 REMARK 500 1 ASP B 10 178.68 -50.33 REMARK 500 1 ASN B 12 -61.88 -93.91 REMARK 500 2 HIS A 10 -61.92 -108.48 REMARK 500 2 HIS A 12 47.30 36.98 REMARK 500 2 PRO A 40 3.71 -69.74 REMARK 500 2 PRO A 56 88.22 -69.83 REMARK 500 2 LEU A 60 149.07 -37.31 REMARK 500 2 GLU A 80 172.41 -46.34 REMARK 500 2 SER A 84 -177.60 -172.97 REMARK 500 2 ALA A 103 152.98 -40.39 REMARK 500 2 PRO A 110 -164.17 -69.76 REMARK 500 2 ASP B 10 -177.43 -59.66 REMARK 500 3 MET A 13 131.73 -175.12 REMARK 500 3 ALA A 18 -39.70 -37.98 REMARK 500 3 PRO A 56 93.02 -69.77 REMARK 500 3 LEU A 60 153.03 -35.62 REMARK 500 3 ALA A 103 154.85 -41.85 REMARK 500 3 PRO A 110 -164.08 -69.82 REMARK 500 3 SER A 113 167.17 -44.99 REMARK 500 3 SER A 117 101.16 -34.64 REMARK 500 3 ASP B 2 123.21 -171.91 REMARK 500 3 SER B 9 169.62 -48.05 REMARK 500 4 MET A 13 149.83 -173.49 REMARK 500 4 PRO A 40 3.59 -69.79 REMARK 500 4 PRO A 56 86.24 -69.77 REMARK 500 4 LEU A 60 146.77 -33.94 REMARK 500 4 THR A 95 -63.00 -95.24 REMARK 500 4 PRO A 110 -166.79 -69.82 REMARK 500 4 ASP B 2 -65.07 -105.94 REMARK 500 4 ASN B 3 151.19 -48.65 REMARK 500 4 ASP B 10 -179.65 -61.65 REMARK 500 5 SER A 5 47.20 39.99 REMARK 500 5 GLU A 35 160.72 -39.82 REMARK 500 5 SER A 38 -71.98 -42.22 REMARK 500 5 PRO A 56 83.15 -69.76 REMARK 500 5 LEU A 60 147.96 -34.52 REMARK 500 5 LEU A 107 75.78 -102.11 REMARK 500 5 PRO A 110 -163.67 -69.70 REMARK 500 5 SER A 116 88.00 -53.32 REMARK 500 6 SER A 2 155.70 -46.00 REMARK 500 6 HIS A 10 -63.28 -97.64 REMARK 500 6 GLU A 35 155.08 -36.96 REMARK 500 REMARK 500 THIS ENTRY HAS 198 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003119.3 RELATED DB: TARGETDB DBREF 2RMX A 8 112 UNP P29350 PTN6_HUMAN 110 214 DBREF 2RMX B 1 15 UNP P26715 NKG2A_HUMAN 1 15 SEQADV 2RMX GLY A 1 UNP P29350 EXPRESSION TAG SEQADV 2RMX SER A 2 UNP P29350 EXPRESSION TAG SEQADV 2RMX SER A 3 UNP P29350 EXPRESSION TAG SEQADV 2RMX GLY A 4 UNP P29350 EXPRESSION TAG SEQADV 2RMX SER A 5 UNP P29350 EXPRESSION TAG SEQADV 2RMX SER A 6 UNP P29350 EXPRESSION TAG SEQADV 2RMX GLY A 7 UNP P29350 EXPRESSION TAG SEQADV 2RMX SER A 113 UNP P29350 EXPRESSION TAG SEQADV 2RMX GLY A 114 UNP P29350 EXPRESSION TAG SEQADV 2RMX PRO A 115 UNP P29350 EXPRESSION TAG SEQADV 2RMX SER A 116 UNP P29350 EXPRESSION TAG SEQADV 2RMX SER A 117 UNP P29350 EXPRESSION TAG SEQADV 2RMX GLY A 118 UNP P29350 EXPRESSION TAG SEQRES 1 A 118 GLY SER SER GLY SER SER GLY TRP TYR HIS GLY HIS MET SEQRES 2 A 118 SER GLY GLY GLN ALA GLU THR LEU LEU GLN ALA LYS GLY SEQRES 3 A 118 GLU PRO TRP THR PHE LEU VAL ARG GLU SER LEU SER GLN SEQRES 4 A 118 PRO GLY ASP PHE VAL LEU SER VAL LEU SER ASP GLN PRO SEQRES 5 A 118 LYS ALA GLY PRO GLY SER PRO LEU ARG VAL THR HIS ILE SEQRES 6 A 118 LYS VAL MET CYS GLU GLY GLY ARG TYR THR VAL GLY GLY SEQRES 7 A 118 LEU GLU THR PHE ASP SER LEU THR ASP LEU VAL GLU HIS SEQRES 8 A 118 PHE LYS LYS THR GLY ILE GLU GLU ALA SER GLY ALA PHE SEQRES 9 A 118 VAL TYR LEU ARG GLN PRO TYR TYR SER GLY PRO SER SER SEQRES 10 A 118 GLY SEQRES 1 B 15 MET ASP ASN GLN GLY VAL ILE PTR SER ASP LEU ASN LEU SEQRES 2 B 15 PRO PRO MODRES 2RMX PTR B 8 TYR O-PHOSPHOTYROSINE HET PTR B 8 24 HETNAM PTR O-PHOSPHOTYROSINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 2 PTR C9 H12 N O6 P HELIX 1 1 SER A 14 GLY A 26 1 13 HELIX 2 2 SER A 84 THR A 95 1 12 SHEET 1 A 5 TYR A 9 HIS A 12 0 SHEET 2 A 5 THR A 30 GLU A 35 1 O VAL A 33 N HIS A 10 SHEET 3 A 5 PHE A 43 LEU A 48 -1 O SER A 46 N LEU A 32 SHEET 4 A 5 VAL A 62 GLU A 70 -1 O THR A 63 N VAL A 47 SHEET 5 A 5 ARG A 73 THR A 75 -1 O THR A 75 N MET A 68 SHEET 1 B 2 ILE A 97 GLU A 99 0 SHEET 2 B 2 ALA A 103 VAL A 105 -1 O ALA A 103 N GLU A 99 LINK C ILE B 7 N PTR B 8 1555 1555 1.33 LINK C PTR B 8 N SER B 9 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1