HEADER SIGNALING PROTEIN 11-JAN-08 2RNL TITLE SOLUTION STRUCTURE OF THE EGF-LIKE DOMAIN FROM HUMAN AMPHIREGULIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMPHIREGULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EGF-LIKE DOMAIN; COMPND 5 SYNONYM: AR, COLORECTUM CELL-DERIVED GROWTH FACTOR, CRDGF; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AREG, SDGF; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE PROTEIN SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: P061201-18; SOURCE 9 OTHER_DETAILS: E. COLI CELL-FREE KEYWDS AR, COLORECTUM CELL-DERIVED GROWTH FACTOR, EGF-LIKE DOMAIN, CRDGF, KEYWDS 2 CYTOKINE, GLYCOPROTEIN, MEMBRANE, POLYMORPHISM, TRANSMEMBRANE, KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 4 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.QIN,F.HAYASHI,T.TERADA,M.SHIROUZU,S.WATANABE,T.KIGAWA,N.YABUTA, AUTHOR 2 H.NOJIMA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI) REVDAT 2 16-MAR-22 2RNL 1 REMARK SEQADV REVDAT 1 20-JAN-09 2RNL 0 JRNL AUTH X.QIN,F.HAYASHI,T.TERADA,M.SHIROUZU,S.WATANABE,T.KIGAWA, JRNL AUTH 2 N.YABUTA,H.NOJIMA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE EGF-LIKE DOMAIN FROM HUMAN JRNL TITL 2 AMPHIREGULIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RNL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000150068. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM [U-100% 2H] TRIS; 100MM REMARK 210 SODIUM CHLORIDE; 0.02% SODIUM REMARK 210 AZIDE; 10% [U-100% 2H] D2O; 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 106.74 -56.72 REMARK 500 1 PHE A 19 -65.33 -105.54 REMARK 500 1 GLN A 39 -177.10 -62.19 REMARK 500 1 GLU A 45 -65.21 -96.98 REMARK 500 1 CYS A 47 41.67 74.47 REMARK 500 2 SER A 3 153.22 -36.15 REMARK 500 2 LYS A 8 51.74 -96.88 REMARK 500 2 PHE A 19 -72.47 -37.18 REMARK 500 2 GLN A 40 -38.48 -37.37 REMARK 500 2 PHE A 43 149.81 -174.70 REMARK 500 2 CYS A 47 42.66 37.03 REMARK 500 3 HIS A 30 -28.49 -37.33 REMARK 500 3 GLU A 45 -65.33 -100.43 REMARK 500 4 ALA A 14 -74.96 -76.10 REMARK 500 4 GLN A 39 -174.98 -58.33 REMARK 500 4 CYS A 47 45.22 71.64 REMARK 500 5 ALA A 14 -71.60 -104.48 REMARK 500 5 PHE A 19 -62.92 -100.13 REMARK 500 5 GLN A 39 176.64 -56.62 REMARK 500 6 ALA A 14 -59.07 -130.26 REMARK 500 6 PHE A 19 -68.00 -97.90 REMARK 500 6 ILE A 21 -61.93 -97.50 REMARK 500 6 GLN A 40 -35.55 -38.29 REMARK 500 6 PHE A 43 143.36 -173.38 REMARK 500 6 GLU A 45 -39.68 -36.65 REMARK 500 6 CYS A 47 43.40 72.82 REMARK 500 7 SER A 2 42.28 -108.48 REMARK 500 7 ILE A 21 -67.67 -100.25 REMARK 500 7 HIS A 22 77.93 -111.84 REMARK 500 7 GLN A 40 -31.24 -39.34 REMARK 500 7 ARG A 46 25.72 41.14 REMARK 500 7 CYS A 47 36.38 36.66 REMARK 500 8 LYS A 9 102.48 -47.86 REMARK 500 8 HIS A 30 -31.88 -39.39 REMARK 500 9 SER A 3 42.15 36.33 REMARK 500 9 ALA A 14 -72.96 -111.60 REMARK 500 9 ILE A 21 -68.20 -93.74 REMARK 500 9 HIS A 22 78.39 -117.47 REMARK 500 9 GLN A 39 151.14 -47.70 REMARK 500 9 PHE A 43 145.15 -173.75 REMARK 500 10 ALA A 14 -73.15 -82.86 REMARK 500 10 GLN A 39 -176.41 -54.78 REMARK 500 10 CYS A 47 42.33 74.20 REMARK 500 11 SER A 6 114.53 -174.32 REMARK 500 11 LYS A 9 176.63 -49.69 REMARK 500 11 ALA A 14 -71.08 -65.99 REMARK 500 11 PHE A 19 -70.51 -38.32 REMARK 500 11 GLN A 39 -177.75 -53.75 REMARK 500 12 HIS A 30 -38.70 -39.90 REMARK 500 12 CYS A 47 54.89 74.83 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AR_001000440.1 RELATED DB: TARGETDB DBREF 2RNL A 8 50 UNP P15514 AREG_HUMAN 142 184 SEQADV 2RNL GLY A 1 UNP P15514 EXPRESSION TAG SEQADV 2RNL SER A 2 UNP P15514 EXPRESSION TAG SEQADV 2RNL SER A 3 UNP P15514 EXPRESSION TAG SEQADV 2RNL GLY A 4 UNP P15514 EXPRESSION TAG SEQADV 2RNL SER A 5 UNP P15514 EXPRESSION TAG SEQADV 2RNL SER A 6 UNP P15514 EXPRESSION TAG SEQADV 2RNL GLY A 7 UNP P15514 EXPRESSION TAG SEQRES 1 A 50 GLY SER SER GLY SER SER GLY LYS LYS ASN PRO CYS ASN SEQRES 2 A 50 ALA GLU PHE GLN ASN PHE CYS ILE HIS GLY GLU CYS LYS SEQRES 3 A 50 TYR ILE GLU HIS LEU GLU ALA VAL THR CYS LYS CYS GLN SEQRES 4 A 50 GLN GLU TYR PHE GLY GLU ARG CYS GLY GLU LYS HELIX 1 1 GLU A 15 PHE A 19 5 5 SHEET 1 A 2 GLU A 24 ILE A 28 0 SHEET 2 A 2 ALA A 33 LYS A 37 -1 O LYS A 37 N GLU A 24 SSBOND 1 CYS A 12 CYS A 25 1555 1555 2.05 SSBOND 2 CYS A 20 CYS A 36 1555 1555 2.01 SSBOND 3 CYS A 38 CYS A 47 1555 1555 2.00 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1